Wall clock time and date at job start Mon Mar 30 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50706 * 119.99801 * 2 1 4 4 C 1.31004 * 120.00106 * 179.97438 * 2 1 3 5 5 C 1.50692 * 120.00020 * 183.75260 * 4 2 1 6 6 C 1.50696 * 119.99658 * 3.75811 * 4 2 1 7 7 C 1.50699 * 109.47156 * 94.99770 * 6 4 2 8 8 O 1.21280 * 120.00212 * 359.97438 * 7 6 4 9 9 N 1.34780 * 120.00022 * 180.27136 * 7 6 4 10 10 C 1.46924 * 120.63027 * 359.72512 * 9 7 6 11 11 C 1.53198 * 108.77465 * 233.58344 * 10 9 7 12 12 C 1.53038 * 109.31279 * 305.36538 * 11 10 9 13 13 C 1.53046 * 109.53647 * 61.36607 * 12 11 10 14 14 H 1.08994 * 109.50023 * 58.58573 * 13 12 11 15 15 C 1.50702 * 109.49472 * 178.65010 * 13 12 11 16 16 H 1.08007 * 120.00124 * 0.02562 * 15 13 12 17 17 C 1.37878 * 120.00163 * 179.97438 * 15 13 12 18 18 N 1.31519 * 119.99719 * 0.02562 * 17 15 13 19 19 Si 1.86794 * 120.00222 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47287 * 90.00377 * 19 17 15 21 21 H 1.48504 * 109.47122 * 210.00179 * 19 17 15 22 22 H 1.48498 * 109.47192 * 330.00183 * 19 17 15 23 23 C 1.46930 * 120.62872 * 179.44185 * 9 7 6 24 24 H 1.09001 * 109.47024 * 269.99851 * 1 2 3 25 25 H 1.08993 * 109.47291 * 30.00204 * 1 2 3 26 26 H 1.09001 * 109.46898 * 150.00333 * 1 2 3 27 27 H 1.08996 * 109.46777 * 185.43129 * 3 2 1 28 28 H 1.09001 * 109.47027 * 305.43290 * 3 2 1 29 29 H 1.08994 * 109.47159 * 65.43427 * 3 2 1 30 30 H 1.09002 * 109.47427 * 174.94978 * 5 4 2 31 31 H 1.09000 * 109.47526 * 294.95161 * 5 4 2 32 32 H 1.09003 * 109.47326 * 54.95068 * 5 4 2 33 33 H 1.08997 * 109.47681 * 334.99445 * 6 4 2 34 34 H 1.09004 * 109.47005 * 214.99306 * 6 4 2 35 35 H 1.08998 * 109.58772 * 353.37236 * 10 9 7 36 36 H 1.08995 * 109.58618 * 113.65686 * 10 9 7 37 37 H 1.09003 * 109.49487 * 65.31488 * 11 10 9 38 38 H 1.09000 * 109.49406 * 185.41023 * 11 10 9 39 39 H 1.08998 * 109.45633 * 181.38446 * 12 11 10 40 40 H 1.08992 * 109.46135 * 301.34682 * 12 11 10 41 41 H 0.97001 * 119.99856 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.58769 * 246.20124 * 23 9 7 43 43 H 1.08994 * 109.58904 * 6.63051 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 3.6666 -1.1359 0.0859 6 6 1.4110 -2.4382 -0.0845 7 6 1.3480 -2.8890 -1.5211 8 8 1.8620 -2.2175 -2.3904 9 7 0.7153 -4.0353 -1.8405 10 6 0.0874 -4.8593 -0.7986 11 6 0.6233 -6.2900 -0.9118 12 6 0.4017 -6.8022 -2.3368 13 6 1.1697 -5.9194 -3.3232 14 1 2.2303 -5.9312 -3.0726 15 6 0.9777 -6.4443 -4.7227 16 1 0.3685 -7.3199 -4.8923 17 6 1.5788 -5.8062 -5.7869 18 7 2.3202 -4.7397 -5.5805 19 14 1.3415 -6.4572 -7.5216 20 1 0.1489 -5.8166 -8.1319 21 1 2.5429 -6.1444 -8.3364 22 1 1.1440 -7.9283 -7.4755 23 6 0.6350 -4.4816 -3.2381 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 3.3281 1.1083 -0.0973 28 1 1.9262 1.9177 -0.8373 29 1 2.0722 1.8334 0.9346 30 1 4.0252 -2.1622 0.1637 31 1 4.0818 -0.6728 -0.8092 32 1 3.9811 -0.5735 0.9651 33 1 0.3995 -2.3005 0.2978 34 1 1.9247 -3.1930 0.5110 35 1 0.3310 -4.4544 0.1836 36 1 -0.9939 -4.8600 -0.9356 37 1 1.6892 -6.2983 -0.6838 38 1 0.0952 -6.9330 -0.2077 39 1 0.7599 -7.8288 -2.4133 40 1 -0.6618 -6.7703 -2.5728 41 1 2.7435 -4.2909 -6.3291 42 1 -0.4024 -4.4543 -3.5714 43 1 1.2401 -3.8276 -3.8659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602179324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:36 Heat of formation + Delta-G solvation = -61.237099 kcal Electronic energy + Delta-G solvation = -21035.800255 eV Core-core repulsion = 18079.585708 eV Total energy + Delta-G solvation = -2956.214546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09006 -38.76777 -37.61144 -35.29398 -33.47102 -32.09989 -31.40114 -30.43596 -27.78808 -26.88462 -25.87584 -24.50210 -23.40083 -21.47337 -19.76792 -18.53825 -17.98764 -17.61631 -16.78035 -16.58148 -16.36267 -15.56555 -15.21236 -15.11740 -15.01054 -14.65913 -14.48127 -14.11754 -13.78770 -13.60761 -13.44075 -13.13871 -13.06650 -12.89951 -12.80206 -12.72413 -12.54122 -12.28942 -12.25251 -12.14645 -11.80283 -11.62335 -11.51548 -11.08523 -10.94177 -10.63057 -10.50388 -9.35821 -9.29448 -8.11885 -6.29288 1.18942 1.39287 1.39419 1.50621 1.83503 2.36377 2.44812 3.16479 3.75515 3.90506 4.01983 4.11907 4.19692 4.24920 4.37292 4.42994 4.54425 4.60912 4.63163 4.75184 4.76941 4.82144 4.83268 4.86738 4.88731 4.99779 5.02403 5.10681 5.13542 5.16003 5.20320 5.26653 5.29981 5.38027 5.55131 5.67741 5.80367 5.90400 6.00083 6.13562 6.33000 6.76078 6.84110 7.40074 7.45547 8.91400 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022853 B = 0.005290 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.924546 B = 5291.544941 C = 5993.582451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C -0.117 4.117 4 C -0.136 4.136 5 C -0.106 4.106 6 C -0.094 4.094 7 C 0.498 3.502 8 O -0.590 6.590 9 N -0.615 5.615 10 C 0.102 3.898 11 C -0.127 4.127 12 C -0.106 4.106 13 C 0.038 3.962 14 H -0.015 1.015 15 C -0.537 4.537 16 H 0.062 0.938 17 C 0.009 3.991 18 N -0.916 5.916 19 Si 0.958 3.042 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.262 1.262 23 C 0.126 3.874 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.259 0.741 42 H 0.032 0.968 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 5.433 16.854 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 C -0.173 4.173 4 C -0.136 4.136 5 C -0.163 4.163 6 C -0.133 4.133 7 C 0.287 3.713 8 O -0.470 6.470 9 N -0.347 5.347 10 C -0.020 4.020 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.019 3.981 14 H 0.003 0.997 15 C -0.576 4.576 16 H 0.080 0.920 17 C -0.190 4.190 18 N -0.555 5.555 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.186 1.186 23 C 0.003 3.997 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.238 5.893 16.313 17.856 hybrid contribution 0.285 -0.325 -1.737 1.790 sum -3.954 5.569 14.576 16.097 Atomic orbital electron populations 1.20859 0.91739 1.01937 1.02872 1.21667 0.96422 0.95112 1.00534 1.20871 0.99770 0.94201 1.02483 1.21019 0.95875 0.93425 1.03277 1.20714 0.92127 1.01930 1.01485 1.20826 1.03717 0.97088 0.91653 1.21421 0.77344 0.80316 0.92192 1.90673 1.47944 1.55832 1.52570 1.48586 1.54556 1.22459 1.09143 1.22023 0.97828 0.90881 0.91223 1.21918 1.01236 0.96285 0.97040 1.21514 0.99675 0.98511 0.94627 1.18975 0.93481 0.91462 0.94156 0.99721 1.21553 1.30816 1.12623 0.92584 0.92016 1.25912 0.94607 0.95055 1.03457 1.70111 1.32832 1.20359 1.32177 0.85560 0.77471 0.79140 0.79539 1.20027 1.21339 1.18571 1.21705 0.98371 0.98847 0.80744 0.89063 0.91800 0.93373 0.91833 0.92098 0.89756 0.92998 0.93510 0.89491 0.85940 0.86785 0.86912 0.90299 0.93061 0.87686 0.93119 0.92538 0.93237 0.94983 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.24 71.24 0.66 -1.92 16 2 C -0.14 -3.49 6.05 -16.49 -0.10 -3.59 16 3 C -0.12 -2.50 9.86 71.24 0.70 -1.79 16 4 C -0.14 -3.81 4.54 -16.49 -0.07 -3.88 16 5 C -0.11 -2.83 8.55 71.23 0.61 -2.22 16 6 C -0.09 -2.57 3.50 29.10 0.10 -2.47 16 7 C 0.50 20.25 7.61 87.66 0.67 20.92 16 8 O -0.59 -30.78 15.45 -3.03 -0.05 -30.83 16 9 N -0.62 -24.76 2.97 -818.07 -2.43 -27.18 16 10 C 0.10 2.83 6.34 86.36 0.55 3.37 16 11 C -0.13 -3.68 6.08 30.67 0.19 -3.49 16 12 C -0.11 -4.11 5.10 30.62 0.16 -3.95 16 13 C 0.04 1.98 2.26 -11.31 -0.03 1.96 16 14 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 15 C -0.54 -30.21 8.56 25.60 0.22 -29.99 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 17 C 0.01 0.51 5.30 84.65 0.45 0.96 16 18 N -0.92 -57.12 11.41 21.45 0.24 -56.88 16 19 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.13 6.45 5.43 86.51 0.47 6.92 16 24 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 26 H 0.05 1.20 6.20 -2.39 -0.01 1.19 16 27 H 0.06 1.37 5.85 -2.39 -0.01 1.36 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.05 1.40 7.98 -2.39 -0.02 1.38 16 31 H 0.05 1.43 7.74 -2.39 -0.02 1.41 16 32 H 0.09 1.78 7.76 -2.39 -0.02 1.76 16 33 H 0.12 2.63 5.89 -2.39 -0.01 2.62 16 34 H 0.11 2.59 7.66 -2.38 -0.02 2.57 16 35 H 0.11 2.20 5.94 -2.39 -0.01 2.19 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 4.49 5.15 -2.39 -0.01 4.48 16 Total: -1.00 -75.10 334.87 5.33 -69.77 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.97 Total: 17.22 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 4.57 Total: -19.19 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -2.18 Total: -84.06 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.83 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.10 5.33 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602179324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.530 kcal (2) G-P(sol) polarization free energy of solvation -75.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds