Wall clock time and date at job start Mon Mar 30 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47080 * 2 1 4 4 C 1.53001 * 109.47006 * 119.99963 * 2 1 3 5 5 C 1.50705 * 115.54626 * 303.86049 * 4 2 1 6 6 O 1.21288 * 120.00065 * 275.41458 * 5 4 2 7 7 N 1.34773 * 119.99966 * 95.42525 * 5 4 2 8 8 C 1.37103 * 120.00048 * 175.38525 * 7 5 4 9 9 H 1.07999 * 120.00282 * 222.88919 * 8 7 5 10 10 C 1.38951 * 119.99830 * 42.88850 * 8 7 5 11 11 N 1.31415 * 120.00471 * 15.24917 * 10 8 7 12 12 Si 1.86802 * 120.00055 * 195.25444 * 10 8 7 13 13 H 1.48499 * 109.47107 * 94.98125 * 12 10 8 14 14 H 1.48497 * 109.47067 * 214.98266 * 12 10 8 15 15 H 1.48508 * 109.46765 * 334.98029 * 12 10 8 16 16 C 1.46500 * 120.00340 * 355.37777 * 7 5 4 17 17 C 1.54884 * 110.75492 * 120.00325 * 16 7 5 18 18 C 1.54265 * 104.31442 * 156.32763 * 17 16 7 19 19 C 1.53880 * 106.59734 * 336.32549 * 18 17 16 20 20 C 1.54270 * 106.59741 * 359.97438 * 19 18 17 21 21 C 1.52997 * 117.51669 * 89.55681 * 4 2 1 22 22 C 1.52990 * 117.49763 * 158.18913 * 4 2 1 23 23 H 1.08999 * 109.46940 * 297.18870 * 1 2 3 24 24 H 1.09003 * 109.47004 * 57.18077 * 1 2 3 25 25 H 1.08994 * 109.47160 * 177.18672 * 1 2 3 26 26 H 1.08998 * 109.46943 * 239.99751 * 2 1 3 27 27 H 1.08996 * 109.47004 * 59.99749 * 3 2 1 28 28 H 1.08993 * 109.46853 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46678 * 299.99979 * 3 2 1 30 30 H 0.96992 * 120.00541 * 184.87410 * 11 10 8 31 31 H 1.09003 * 110.81235 * 356.67469 * 16 7 5 32 32 H 1.09001 * 110.48671 * 37.58442 * 17 16 7 33 33 H 1.09002 * 110.49295 * 275.07090 * 17 16 7 34 34 H 1.09001 * 110.03268 * 95.60884 * 18 17 16 35 35 H 1.09003 * 110.03821 * 217.04169 * 18 17 16 36 36 H 1.08997 * 110.03040 * 119.28287 * 19 18 17 37 37 H 1.08997 * 110.03153 * 240.66824 * 19 18 17 38 38 H 1.08998 * 110.48648 * 142.28894 * 20 19 18 39 39 H 1.08999 * 110.48818 * 264.80018 * 20 19 18 40 40 H 1.09000 * 117.49780 * 214.96693 * 21 4 2 41 41 H 1.08994 * 117.49972 * 359.97438 * 21 4 2 42 42 H 1.08994 * 117.50410 * 359.97438 * 22 4 2 43 43 H 1.09010 * 117.49694 * 144.97388 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5424 -0.1760 2.5631 6 8 2.1086 0.7616 3.0841 7 7 0.4684 -0.7305 3.1593 8 6 0.0725 -0.2975 4.3985 9 1 -0.2238 -1.0130 5.1513 10 6 0.0526 1.0618 4.6859 11 7 0.1171 1.9406 3.7109 12 14 -0.0657 1.6402 6.4581 13 1 1.2970 1.9099 6.9828 14 1 -0.8751 2.8837 6.5200 15 1 -0.7133 0.5867 7.2804 16 6 -0.2763 -1.7957 2.4833 17 6 -0.2684 -3.0930 3.3293 18 6 -1.5163 -3.8657 2.8543 19 6 -2.4825 -2.8219 2.2671 20 6 -1.7883 -1.4513 2.4064 21 6 2.2658 -2.2313 1.1510 22 6 3.4634 -1.2809 1.2102 23 1 -0.3633 0.4696 0.9141 24 1 -0.3633 0.5570 -0.8637 25 1 -0.3633 -1.0264 -0.0504 26 1 1.8934 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 0.1745 2.8872 3.9142 31 1 0.1294 -1.9807 1.4886 32 1 -0.3470 -2.8569 4.3905 33 1 0.6351 -3.6705 3.1338 34 1 -1.2381 -4.5895 2.0883 35 1 -1.9837 -4.3746 3.6973 36 1 -2.6731 -3.0392 1.2162 37 1 -3.4191 -2.8248 2.8247 38 1 -1.9933 -0.8295 1.5350 39 1 -2.1143 -0.9493 3.3173 40 1 2.0545 -2.8304 2.0368 41 1 2.0506 -2.7113 0.1964 42 1 4.0364 -1.1358 0.2945 43 1 4.0401 -1.2545 2.1349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697571874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:58 Heat of formation + Delta-G solvation = -12.605439 kcal Electronic energy + Delta-G solvation = -22567.096843 eV Core-core repulsion = 19612.991124 eV Total energy + Delta-G solvation = -2954.105719 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59821 -37.17848 -35.88413 -33.19231 -32.79623 -31.29677 -28.07730 -26.96885 -26.31581 -25.22678 -22.80401 -21.93922 -20.92770 -19.78136 -19.56647 -18.18254 -16.05052 -15.78140 -15.09452 -14.95207 -14.55323 -14.03326 -13.92780 -13.20694 -13.03588 -12.77190 -12.56558 -12.38354 -12.16596 -11.60486 -11.40672 -11.18329 -11.09992 -10.84315 -10.81108 -10.76212 -10.62643 -10.53258 -10.44790 -10.42055 -10.18943 -10.09398 -9.86266 -9.80906 -9.44894 -9.18015 -8.64080 -7.77660 -6.91786 -5.93123 -3.74987 3.37253 3.43276 3.45739 4.22917 4.33176 4.45775 4.94896 5.14061 5.25239 5.27436 5.32575 5.41036 5.48436 5.62667 5.79136 5.87264 5.91962 6.01673 6.05243 6.11260 6.13991 6.15740 6.24259 6.27060 6.30473 6.34766 6.43485 6.46641 6.49749 6.56274 6.61536 6.64955 6.67467 6.78880 6.93025 6.95912 7.04624 7.17756 7.26299 7.74331 8.41365 9.21709 9.33782 9.82607 10.49434 11.10689 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.011331 C = 0.007917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.684946 B = 2470.487506 C = 3535.667090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.043 4.043 3 C -0.143 4.143 4 C -0.127 4.127 5 C 0.511 3.489 6 O -0.520 6.520 7 N -0.443 5.443 8 C -0.339 4.339 9 H 0.076 0.924 10 C 0.068 3.932 11 N -0.821 5.821 12 Si 0.900 3.100 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.275 1.275 16 C 0.127 3.873 17 C -0.136 4.136 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.181 4.181 22 C -0.158 4.158 23 H 0.081 0.919 24 H 0.044 0.956 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.260 0.740 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -8.353 -6.974 10.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.131 4.131 5 C 0.297 3.703 6 O -0.397 6.397 7 N -0.164 5.164 8 C -0.466 4.466 9 H 0.094 0.906 10 C -0.143 4.143 11 N -0.455 5.455 12 Si 0.728 3.272 13 H -0.208 1.208 14 H -0.215 1.215 15 H -0.200 1.200 16 C 0.022 3.978 17 C -0.175 4.175 18 C -0.157 4.157 19 C -0.161 4.161 20 C -0.165 4.165 21 C -0.218 4.218 22 C -0.196 4.196 23 H 0.100 0.900 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.898 -7.634 -6.738 10.222 hybrid contribution -0.076 0.266 0.769 0.817 sum -0.974 -7.368 -5.969 9.532 Atomic orbital electron populations 1.22059 0.94914 1.01054 1.02974 1.20468 0.95902 0.96102 0.93707 1.21760 1.00230 0.95723 1.02263 1.21698 0.99401 0.94673 0.97289 1.18777 0.81555 0.85358 0.84585 1.90529 1.57301 1.26936 1.64893 1.43123 1.23010 1.33489 1.16751 1.18876 1.48493 0.90563 0.88649 0.90646 1.25129 0.95612 0.96237 0.97278 1.69887 1.42705 1.01454 1.31489 0.86374 0.77884 0.78064 0.84867 1.20780 1.21524 1.20007 1.22249 0.91929 0.88039 0.95614 1.22729 0.96267 0.96715 1.01797 1.22043 0.96497 0.97575 0.99620 1.22091 0.98242 0.96078 0.99688 1.22690 0.95628 0.95308 1.02842 1.23158 1.03211 0.92735 1.02694 1.22851 0.90744 1.03348 1.02617 0.89990 0.93687 0.93112 0.92396 0.90266 0.93520 0.93985 0.93014 0.89445 0.90744 0.92801 0.92716 0.92625 0.92823 0.92607 0.92458 0.89883 0.88458 0.89227 0.89234 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 7.04 37.16 0.26 -2.46 16 2 C -0.04 -0.76 2.75 -90.61 -0.25 -1.01 16 3 C -0.14 -2.68 9.00 37.16 0.33 -2.34 16 4 C -0.13 -2.48 0.74 -155.66 -0.11 -2.59 16 5 C 0.51 12.64 4.74 -10.98 -0.05 12.59 16 6 O -0.52 -15.24 13.68 5.55 0.08 -15.16 16 7 N -0.44 -10.61 2.44 -105.41 -0.26 -10.87 16 8 C -0.34 -9.01 7.62 -14.93 -0.11 -9.13 16 9 H 0.08 1.97 6.72 -52.49 -0.35 1.62 16 10 C 0.07 1.87 4.50 -17.47 -0.08 1.80 16 11 N -0.82 -23.80 11.21 55.50 0.62 -23.18 16 12 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 13 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.13 2.45 1.15 -65.74 -0.08 2.38 16 17 C -0.14 -2.35 6.22 -25.08 -0.16 -2.51 16 18 C -0.12 -1.70 6.80 -25.61 -0.17 -1.88 16 19 C -0.12 -1.82 6.80 -25.61 -0.17 -1.99 16 20 C -0.13 -2.35 6.07 -24.87 -0.15 -2.50 16 21 C -0.18 -2.94 7.64 -26.73 -0.20 -3.15 16 22 C -0.16 -2.73 9.95 -26.74 -0.27 -2.99 16 23 H 0.08 1.79 6.23 -51.93 -0.32 1.47 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.82 6.33 -51.93 -0.33 0.49 16 26 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 27 H 0.08 1.84 7.18 -51.93 -0.37 1.46 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.09 1.59 3.09 -51.93 -0.16 1.43 16 32 H 0.07 1.43 6.62 -51.93 -0.34 1.09 16 33 H 0.05 0.87 6.77 -51.93 -0.35 0.51 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.06 6.55 -51.93 -0.34 0.72 16 39 H 0.08 1.78 7.11 -51.93 -0.37 1.41 16 40 H 0.10 1.64 5.98 -51.93 -0.31 1.33 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -30.36 319.66 -8.02 -38.38 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.04 Total: 4.98 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -1.21 Total: -15.80 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.37 Total: -34.04 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.08 Total: -15.16 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.36 -8.02 -38.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697571874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.779 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds