Wall clock time and date at job start Mon Mar 30 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47080 * 2 1 4 4 C 1.53001 * 109.47006 * 119.99963 * 2 1 3 5 5 C 1.50705 * 115.54626 * 303.86049 * 4 2 1 6 6 O 1.21288 * 120.00065 * 275.41458 * 5 4 2 7 7 N 1.34773 * 119.99966 * 95.42525 * 5 4 2 8 8 C 1.37103 * 120.00048 * 175.38525 * 7 5 4 9 9 H 1.07999 * 120.00282 * 222.88919 * 8 7 5 10 10 C 1.38951 * 119.99830 * 42.88850 * 8 7 5 11 11 N 1.31415 * 120.00471 * 15.24917 * 10 8 7 12 12 Si 1.86802 * 120.00055 * 195.25444 * 10 8 7 13 13 H 1.48499 * 109.47107 * 94.98125 * 12 10 8 14 14 H 1.48497 * 109.47067 * 214.98266 * 12 10 8 15 15 H 1.48508 * 109.46765 * 334.98029 * 12 10 8 16 16 C 1.46500 * 120.00340 * 355.37777 * 7 5 4 17 17 C 1.54884 * 110.75492 * 120.00325 * 16 7 5 18 18 C 1.54265 * 104.31442 * 156.32763 * 17 16 7 19 19 C 1.53880 * 106.59734 * 336.32549 * 18 17 16 20 20 C 1.54270 * 106.59741 * 359.97438 * 19 18 17 21 21 C 1.52997 * 117.51669 * 89.55681 * 4 2 1 22 22 C 1.52990 * 117.49763 * 158.18913 * 4 2 1 23 23 H 1.08999 * 109.46940 * 297.18870 * 1 2 3 24 24 H 1.09003 * 109.47004 * 57.18077 * 1 2 3 25 25 H 1.08994 * 109.47160 * 177.18672 * 1 2 3 26 26 H 1.08998 * 109.46943 * 239.99751 * 2 1 3 27 27 H 1.08996 * 109.47004 * 59.99749 * 3 2 1 28 28 H 1.08993 * 109.46853 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46678 * 299.99979 * 3 2 1 30 30 H 0.96992 * 120.00541 * 184.87410 * 11 10 8 31 31 H 1.09003 * 110.81235 * 356.67469 * 16 7 5 32 32 H 1.09001 * 110.48671 * 37.58442 * 17 16 7 33 33 H 1.09002 * 110.49295 * 275.07090 * 17 16 7 34 34 H 1.09001 * 110.03268 * 95.60884 * 18 17 16 35 35 H 1.09003 * 110.03821 * 217.04169 * 18 17 16 36 36 H 1.08997 * 110.03040 * 119.28287 * 19 18 17 37 37 H 1.08997 * 110.03153 * 240.66824 * 19 18 17 38 38 H 1.08998 * 110.48648 * 142.28894 * 20 19 18 39 39 H 1.08999 * 110.48818 * 264.80018 * 20 19 18 40 40 H 1.09000 * 117.49780 * 214.96693 * 21 4 2 41 41 H 1.08994 * 117.49972 * 359.97438 * 21 4 2 42 42 H 1.08994 * 117.50410 * 359.97438 * 22 4 2 43 43 H 1.09010 * 117.49694 * 144.97388 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.5424 -0.1760 2.5631 6 8 2.1086 0.7616 3.0841 7 7 0.4684 -0.7305 3.1593 8 6 0.0725 -0.2975 4.3985 9 1 -0.2238 -1.0130 5.1513 10 6 0.0526 1.0618 4.6859 11 7 0.1171 1.9406 3.7109 12 14 -0.0657 1.6402 6.4581 13 1 1.2970 1.9099 6.9828 14 1 -0.8751 2.8837 6.5200 15 1 -0.7133 0.5867 7.2804 16 6 -0.2763 -1.7957 2.4833 17 6 -0.2684 -3.0930 3.3293 18 6 -1.5163 -3.8657 2.8543 19 6 -2.4825 -2.8219 2.2671 20 6 -1.7883 -1.4513 2.4064 21 6 2.2658 -2.2313 1.1510 22 6 3.4634 -1.2809 1.2102 23 1 -0.3633 0.4696 0.9141 24 1 -0.3633 0.5570 -0.8637 25 1 -0.3633 -1.0264 -0.0504 26 1 1.8934 -0.5139 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 0.1745 2.8872 3.9142 31 1 0.1294 -1.9807 1.4886 32 1 -0.3470 -2.8569 4.3905 33 1 0.6351 -3.6705 3.1338 34 1 -1.2381 -4.5895 2.0883 35 1 -1.9837 -4.3746 3.6973 36 1 -2.6731 -3.0392 1.2162 37 1 -3.4191 -2.8248 2.8247 38 1 -1.9933 -0.8295 1.5350 39 1 -2.1143 -0.9493 3.3173 40 1 2.0545 -2.8304 2.0368 41 1 2.0506 -2.7113 0.1964 42 1 4.0364 -1.1358 0.2945 43 1 4.0401 -1.2545 2.1349 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697571874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:57 Heat of formation + Delta-G solvation = -29.756576 kcal Electronic energy + Delta-G solvation = -22567.840572 eV Core-core repulsion = 19612.991124 eV Total energy + Delta-G solvation = -2954.849449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21986 -38.61026 -37.62585 -35.07061 -34.20231 -33.24884 -29.44597 -28.51019 -27.76545 -27.13684 -24.39066 -23.28148 -22.56587 -21.27935 -20.88961 -19.93582 -17.84852 -17.38552 -16.62760 -16.51494 -16.23774 -15.73853 -15.53895 -14.69613 -14.54319 -14.30771 -14.05158 -14.01518 -13.71185 -13.34589 -12.97379 -12.92826 -12.68227 -12.65746 -12.36091 -12.32147 -12.09572 -12.08463 -11.95781 -11.86198 -11.77470 -11.63006 -11.39236 -11.07418 -10.91936 -10.66310 -10.61413 -9.67993 -8.89450 -8.02039 -5.86247 1.36259 1.41936 1.47303 2.37450 2.60249 2.86067 3.25731 3.34896 3.74048 3.94087 4.00072 4.03314 4.10985 4.17329 4.38935 4.48995 4.52973 4.64304 4.71431 4.73677 4.78188 4.83971 4.89315 4.89839 4.98863 5.01034 5.03986 5.11556 5.14448 5.18639 5.24259 5.30478 5.34245 5.36700 5.47752 5.52993 5.62432 5.65489 5.67600 5.73488 6.32524 7.18216 7.39996 7.89866 8.58782 8.99574 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.011331 C = 0.007917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.684946 B = 2470.487506 C = 3535.667090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 C -0.136 4.136 4 C -0.153 4.153 5 C 0.501 3.499 6 O -0.582 6.582 7 N -0.453 5.453 8 C -0.343 4.343 9 H 0.073 0.927 10 C 0.018 3.982 11 N -0.851 5.851 12 Si 0.953 3.047 13 H -0.295 1.295 14 H -0.286 1.286 15 H -0.257 1.257 16 C 0.123 3.877 17 C -0.136 4.136 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.152 4.152 22 C -0.155 4.155 23 H 0.030 0.970 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.250 0.750 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -11.536 -9.372 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.057 4.057 3 C -0.194 4.194 4 C -0.157 4.157 5 C 0.290 3.710 6 O -0.463 6.463 7 N -0.173 5.173 8 C -0.471 4.471 9 H 0.091 0.909 10 C -0.189 4.189 11 N -0.487 5.487 12 Si 0.779 3.221 13 H -0.222 1.222 14 H -0.212 1.212 15 H -0.181 1.181 16 C 0.019 3.981 17 C -0.174 4.174 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.165 4.165 21 C -0.189 4.189 22 C -0.193 4.193 23 H 0.050 0.950 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.258 -10.868 -9.131 14.250 hybrid contribution 0.048 1.233 1.526 1.962 sum -1.211 -9.635 -7.605 12.334 Atomic orbital electron populations 1.21960 0.95138 1.01943 1.01196 1.20535 0.95661 0.95212 0.94324 1.21681 1.00393 0.96730 1.00578 1.21525 1.01596 0.97526 0.95023 1.19679 0.80915 0.84336 0.86120 1.90478 1.59168 1.29582 1.67043 1.43354 1.23467 1.34225 1.16268 1.19063 1.47377 0.90420 0.90261 0.90918 1.25858 0.95946 0.96743 1.00332 1.70029 1.44893 1.00894 1.32904 0.85548 0.77028 0.78088 0.81397 1.22238 1.21226 1.18137 1.22492 0.91722 0.87419 0.96444 1.22697 0.98840 0.96185 0.99694 1.22026 0.94510 0.97423 1.00873 1.22064 0.98189 0.93344 1.01664 1.22618 0.95785 0.97499 1.00574 1.23286 1.00805 0.90320 1.04472 1.22952 0.90163 1.03023 1.03120 0.95038 0.91798 0.91149 0.87965 0.95913 0.93130 0.91552 0.94112 0.87586 0.93667 0.91342 0.89636 0.91524 0.90130 0.91893 0.93023 0.93927 0.89196 0.85005 0.86026 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 7.04 71.98 0.51 -4.40 16 2 C -0.04 -1.28 2.75 -10.79 -0.03 -1.31 16 3 C -0.14 -5.08 9.00 71.98 0.65 -4.44 16 4 C -0.15 -5.75 0.74 -52.93 -0.04 -5.79 16 5 C 0.50 25.53 4.74 87.66 0.42 25.94 16 6 O -0.58 -36.10 13.68 -3.06 -0.04 -36.14 16 7 N -0.45 -22.33 2.44 -605.80 -1.48 -23.80 16 8 C -0.34 -19.09 7.62 84.04 0.64 -18.45 16 9 H 0.07 3.97 6.72 -2.91 -0.02 3.95 16 10 C 0.02 1.02 4.50 84.93 0.38 1.40 16 11 N -0.85 -52.63 11.21 21.66 0.24 -52.39 16 12 Si 0.95 47.03 29.58 68.60 2.03 49.06 16 13 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 14 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 15 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 16 C 0.12 4.65 1.15 46.41 0.05 4.70 16 17 C -0.14 -4.43 6.22 31.67 0.20 -4.24 16 18 C -0.11 -2.73 6.80 31.32 0.21 -2.52 16 19 C -0.11 -3.04 6.80 31.32 0.21 -2.83 16 20 C -0.13 -4.65 6.07 31.80 0.19 -4.46 16 21 C -0.15 -4.34 7.64 30.59 0.23 -4.11 16 22 C -0.16 -4.97 9.95 30.59 0.30 -4.67 16 23 H 0.03 1.38 6.23 -2.39 -0.01 1.37 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.04 6.33 -2.39 -0.02 2.03 16 26 H 0.10 2.57 8.10 -2.39 -0.02 2.55 16 27 H 0.02 1.08 7.18 -2.39 -0.02 1.06 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.11 3.56 3.09 -2.39 -0.01 3.55 16 32 H 0.04 1.73 6.62 -2.39 -0.02 1.71 16 33 H 0.07 2.01 6.77 -2.39 -0.02 2.00 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.91 6.55 -2.39 -0.02 1.90 16 39 H 0.04 1.89 7.11 -2.39 -0.02 1.87 16 40 H 0.09 2.72 5.98 -2.39 -0.01 2.71 16 41 H 0.13 2.72 8.14 -2.39 -0.02 2.71 16 42 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -73.15 319.66 5.67 -67.49 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.98 Total: 20.94 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: 3.93 Total: -25.16 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.23 Total: -76.19 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.04 Total: -36.14 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -73.15 5.67 -67.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697571874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.728 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds