Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47056 * 2 1 4 4 C 1.53007 * 109.46795 * 119.99799 * 2 1 3 5 5 C 1.50698 * 115.54859 * 303.76038 * 4 2 1 6 6 O 1.21285 * 120.00344 * 99.13013 * 5 4 2 7 7 N 1.34776 * 120.00220 * 279.12939 * 5 4 2 8 8 C 1.46927 * 120.63007 * 354.58045 * 7 5 4 9 9 C 1.53197 * 108.77801 * 233.58986 * 8 7 5 10 10 C 1.53038 * 109.31150 * 305.36419 * 9 8 7 11 11 C 1.53043 * 109.53761 * 61.36162 * 10 9 8 12 12 H 1.09000 * 109.51958 * 58.60349 * 11 10 9 13 13 C 1.50703 * 109.49755 * 178.67977 * 11 10 9 14 14 H 1.07998 * 119.99627 * 119.83614 * 13 11 10 15 15 C 1.37878 * 120.00158 * 299.84603 * 13 11 10 16 16 N 1.31509 * 120.00057 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99881 * 180.27316 * 15 13 11 18 18 H 1.48493 * 109.47178 * 179.72081 * 17 15 13 19 19 H 1.48501 * 109.47024 * 299.72193 * 17 15 13 20 20 H 1.48501 * 109.47263 * 59.71959 * 17 15 13 21 21 C 1.46923 * 120.63196 * 174.56079 * 7 5 4 22 22 C 1.52994 * 117.49787 * 89.42843 * 4 2 1 23 23 C 1.52994 * 117.49662 * 158.08948 * 4 2 1 24 24 H 1.08995 * 109.47514 * 305.48759 * 1 2 3 25 25 H 1.09002 * 109.46526 * 65.48671 * 1 2 3 26 26 H 1.09002 * 109.47158 * 185.48068 * 1 2 3 27 27 H 1.08994 * 109.47418 * 239.99854 * 2 1 3 28 28 H 1.08998 * 109.47034 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47207 * 299.99618 * 3 2 1 30 30 H 1.09003 * 109.47101 * 59.99794 * 3 2 1 31 31 H 1.09008 * 109.58857 * 353.37628 * 8 7 5 32 32 H 1.08999 * 109.58698 * 113.79703 * 8 7 5 33 33 H 1.09006 * 109.49459 * 65.31272 * 9 8 7 34 34 H 1.08997 * 109.49884 * 185.37964 * 9 8 7 35 35 H 1.08997 * 109.45965 * 301.34565 * 10 9 8 36 36 H 1.08998 * 109.46268 * 181.38371 * 10 9 8 37 37 H 0.97003 * 120.00136 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.58734 * 6.62354 * 21 7 5 39 39 H 1.09000 * 109.70296 * 246.26410 * 21 7 5 40 40 H 1.09004 * 117.49918 * 215.00098 * 22 4 2 41 41 H 1.09000 * 117.49981 * 0.02655 * 22 4 2 42 42 H 1.08997 * 117.50319 * 359.97438 * 23 4 2 43 43 H 1.09009 * 117.49453 * 145.00087 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5442 -0.1746 2.5633 6 8 0.6196 -0.7133 3.1341 7 7 2.1283 0.9130 3.1041 8 6 3.3227 1.5060 2.4872 9 6 4.4220 1.6174 3.5483 10 6 3.8857 2.3937 4.7532 11 6 2.7013 1.6396 5.3620 12 1 3.0202 0.6412 5.6613 13 6 2.1944 2.3882 6.5677 14 1 1.1768 2.7491 6.5907 15 6 3.0299 2.6126 7.6413 16 7 4.2690 2.1728 7.6134 17 14 2.3993 3.5339 9.1389 18 1 3.4826 3.6365 10.1493 19 1 1.9673 4.8964 8.7362 20 1 1.2466 2.8012 9.7218 21 6 1.5825 1.5284 4.3214 22 6 2.2627 -2.2317 1.1516 23 6 3.4625 -1.2830 1.2095 24 1 -0.3634 0.5965 0.8367 25 1 -0.3632 0.4264 -0.9351 26 1 -0.3633 -1.0230 0.0982 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.6660 0.8707 1.6707 32 1 3.0821 2.4979 2.1047 33 1 4.7251 0.6191 3.8643 34 1 5.2803 2.1426 3.1292 35 1 3.5599 3.3830 4.4319 36 1 4.6736 2.4957 5.4994 37 1 4.8567 2.3303 8.3689 38 1 0.7775 0.9079 4.7153 39 1 1.1984 2.5220 4.0905 40 1 2.0506 -2.8301 2.0377 41 1 2.0463 -2.7116 0.1971 42 1 4.0350 -1.1392 0.2932 43 1 4.0398 -1.2572 2.1338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697585873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -26.210580 kcal Electronic energy + Delta-G solvation = -21694.637483 eV Core-core repulsion = 18739.941800 eV Total energy + Delta-G solvation = -2954.695683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40310 -37.44394 -36.44970 -33.53767 -33.27539 -31.26926 -30.23135 -27.25680 -25.52051 -24.96035 -23.06532 -22.40299 -21.78710 -21.25791 -19.29312 -17.65657 -16.58767 -16.13442 -15.61655 -15.44903 -14.69224 -14.35126 -13.87608 -13.76404 -13.36816 -13.18910 -13.00521 -12.71948 -12.68070 -12.32012 -11.94041 -11.80831 -11.52892 -11.48702 -11.25110 -10.98095 -10.93822 -10.76881 -10.75522 -10.39657 -10.18054 -9.99740 -9.81054 -9.75061 -9.42146 -9.13224 -8.79396 -8.37456 -7.84557 -6.01110 -4.08263 3.06361 3.31757 3.36112 3.38134 3.46117 3.79655 4.43028 4.50270 4.77294 4.82148 4.88065 5.24097 5.26659 5.28807 5.39866 5.50391 5.60794 5.65017 5.70387 5.73381 5.82754 5.89367 5.90441 5.98875 6.09003 6.12672 6.16452 6.29216 6.33964 6.36187 6.43695 6.51372 6.67960 6.83810 7.01894 7.19437 7.35418 7.69711 7.93617 8.06864 8.08805 8.38737 8.71914 8.95316 9.56492 11.04361 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.005326 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.141387 B = 5255.640998 C = 5418.625964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C -0.159 4.159 4 C -0.146 4.146 5 C 0.548 3.452 6 O -0.548 6.548 7 N -0.596 5.596 8 C 0.103 3.897 9 C -0.137 4.137 10 C -0.112 4.112 11 C 0.041 3.959 12 H 0.028 0.972 13 C -0.514 4.514 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.287 1.287 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.116 3.884 22 C -0.148 4.148 23 C -0.168 4.168 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.035 0.965 36 H 0.094 0.906 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -3.055 -16.192 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.065 4.065 3 C -0.216 4.216 4 C -0.149 4.149 5 C 0.334 3.666 6 O -0.426 6.426 7 N -0.327 5.327 8 C -0.020 4.020 9 C -0.175 4.175 10 C -0.150 4.150 11 C 0.022 3.978 12 H 0.047 0.953 13 C -0.553 4.553 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.213 1.213 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.005 4.005 22 C -0.185 4.185 23 C -0.205 4.205 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.330 -3.323 -15.754 16.104 hybrid contribution -0.150 0.583 0.895 1.078 sum -0.480 -2.740 -14.859 15.118 Atomic orbital electron populations 1.21789 0.94529 1.02369 1.01527 1.20562 0.96161 0.95831 0.93993 1.22225 1.01277 0.95638 1.02436 1.21495 1.00783 0.97425 0.95224 1.19361 0.82515 0.79993 0.84693 1.90653 1.30135 1.59003 1.62795 1.48222 1.28363 1.28426 1.27732 1.22123 0.85708 0.98030 0.96122 1.22037 0.96541 1.01349 0.97576 1.21619 1.01640 0.96596 0.95121 1.18951 0.90605 0.96784 0.91440 0.95349 1.21046 0.97922 1.35955 1.00389 0.92580 1.24929 0.94879 0.95665 0.98290 1.69864 1.05679 1.46137 1.31121 0.86644 0.78451 0.80318 0.82511 1.21311 1.20271 1.20232 1.21991 0.98695 0.96147 0.83671 1.22996 1.01001 0.90902 1.03607 1.23152 0.90177 1.03282 1.03850 0.92457 0.92735 0.92310 0.90615 0.92011 0.92653 0.91507 0.89874 0.92089 0.92566 0.92575 0.94646 0.88736 0.92941 0.90440 0.92772 0.88242 0.88252 0.88060 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.86 37.16 0.33 -1.42 16 2 C -0.05 -0.53 2.75 -90.62 -0.25 -0.78 16 3 C -0.16 -1.73 7.42 37.16 0.28 -1.45 16 4 C -0.15 -2.01 0.81 -155.66 -0.13 -2.13 16 5 C 0.55 10.12 5.59 -10.99 -0.06 10.06 16 6 O -0.55 -12.22 16.43 5.55 0.09 -12.13 16 7 N -0.60 -11.13 2.60 -172.76 -0.45 -11.58 16 8 C 0.10 1.61 3.95 -3.71 -0.01 1.60 16 9 C -0.14 -2.45 6.08 -26.61 -0.16 -2.61 16 10 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 11 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.12 2.54 5.66 -3.71 -0.02 2.52 16 22 C -0.15 -1.82 9.86 -26.70 -0.26 -2.08 16 23 C -0.17 -1.96 7.83 -26.70 -0.21 -2.17 16 24 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 28 H 0.06 0.61 6.60 -51.93 -0.34 0.27 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.87 5.59 -51.93 -0.29 0.58 16 31 H 0.08 1.09 3.17 -51.92 -0.16 0.93 16 32 H 0.06 0.90 7.09 -51.93 -0.37 0.53 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.32 8.11 -51.92 -0.42 0.90 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -29.91 326.11 -8.34 -38.26 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.28 Total: 1.76 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.23 Total: -12.96 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.18 Total: -36.03 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.91 -8.34 -38.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697585873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.046 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds