Wall clock time and date at job start Mon Mar 30 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47056 * 2 1 4 4 C 1.53007 * 109.46795 * 119.99799 * 2 1 3 5 5 C 1.50698 * 115.54859 * 303.76038 * 4 2 1 6 6 O 1.21285 * 120.00344 * 99.13013 * 5 4 2 7 7 N 1.34776 * 120.00220 * 279.12939 * 5 4 2 8 8 C 1.46927 * 120.63007 * 354.58045 * 7 5 4 9 9 C 1.53197 * 108.77801 * 233.58986 * 8 7 5 10 10 C 1.53038 * 109.31150 * 305.36419 * 9 8 7 11 11 C 1.53043 * 109.53761 * 61.36162 * 10 9 8 12 12 H 1.09000 * 109.51958 * 58.60349 * 11 10 9 13 13 C 1.50703 * 109.49755 * 178.67977 * 11 10 9 14 14 H 1.07998 * 119.99627 * 119.83614 * 13 11 10 15 15 C 1.37878 * 120.00158 * 299.84603 * 13 11 10 16 16 N 1.31509 * 120.00057 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99881 * 180.27316 * 15 13 11 18 18 H 1.48493 * 109.47178 * 179.72081 * 17 15 13 19 19 H 1.48501 * 109.47024 * 299.72193 * 17 15 13 20 20 H 1.48501 * 109.47263 * 59.71959 * 17 15 13 21 21 C 1.46923 * 120.63196 * 174.56079 * 7 5 4 22 22 C 1.52994 * 117.49787 * 89.42843 * 4 2 1 23 23 C 1.52994 * 117.49662 * 158.08948 * 4 2 1 24 24 H 1.08995 * 109.47514 * 305.48759 * 1 2 3 25 25 H 1.09002 * 109.46526 * 65.48671 * 1 2 3 26 26 H 1.09002 * 109.47158 * 185.48068 * 1 2 3 27 27 H 1.08994 * 109.47418 * 239.99854 * 2 1 3 28 28 H 1.08998 * 109.47034 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47207 * 299.99618 * 3 2 1 30 30 H 1.09003 * 109.47101 * 59.99794 * 3 2 1 31 31 H 1.09008 * 109.58857 * 353.37628 * 8 7 5 32 32 H 1.08999 * 109.58698 * 113.79703 * 8 7 5 33 33 H 1.09006 * 109.49459 * 65.31272 * 9 8 7 34 34 H 1.08997 * 109.49884 * 185.37964 * 9 8 7 35 35 H 1.08997 * 109.45965 * 301.34565 * 10 9 8 36 36 H 1.08998 * 109.46268 * 181.38371 * 10 9 8 37 37 H 0.97003 * 120.00136 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.58734 * 6.62354 * 21 7 5 39 39 H 1.09000 * 109.70296 * 246.26410 * 21 7 5 40 40 H 1.09004 * 117.49918 * 215.00098 * 22 4 2 41 41 H 1.09000 * 117.49981 * 0.02655 * 22 4 2 42 42 H 1.08997 * 117.50319 * 359.97438 * 23 4 2 43 43 H 1.09009 * 117.49453 * 145.00087 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5442 -0.1746 2.5633 6 8 0.6196 -0.7133 3.1341 7 7 2.1283 0.9130 3.1041 8 6 3.3227 1.5060 2.4872 9 6 4.4220 1.6174 3.5483 10 6 3.8857 2.3937 4.7532 11 6 2.7013 1.6396 5.3620 12 1 3.0202 0.6412 5.6613 13 6 2.1944 2.3882 6.5677 14 1 1.1768 2.7491 6.5907 15 6 3.0299 2.6126 7.6413 16 7 4.2690 2.1728 7.6134 17 14 2.3993 3.5339 9.1389 18 1 3.4826 3.6365 10.1493 19 1 1.9673 4.8964 8.7362 20 1 1.2466 2.8012 9.7218 21 6 1.5825 1.5284 4.3214 22 6 2.2627 -2.2317 1.1516 23 6 3.4625 -1.2830 1.2095 24 1 -0.3634 0.5965 0.8367 25 1 -0.3632 0.4264 -0.9351 26 1 -0.3633 -1.0230 0.0982 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.6660 0.8707 1.6707 32 1 3.0821 2.4979 2.1047 33 1 4.7251 0.6191 3.8643 34 1 5.2803 2.1426 3.1292 35 1 3.5599 3.3830 4.4319 36 1 4.6736 2.4957 5.4994 37 1 4.8567 2.3303 8.3689 38 1 0.7775 0.9079 4.7153 39 1 1.1984 2.5220 4.0905 40 1 2.0506 -2.8301 2.0377 41 1 2.0463 -2.7116 0.1971 42 1 4.0350 -1.1392 0.2932 43 1 4.0398 -1.2572 2.1338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697585873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:51 Heat of formation + Delta-G solvation = -42.999634 kcal Electronic energy + Delta-G solvation = -21695.365511 eV Core-core repulsion = 18739.941800 eV Total energy + Delta-G solvation = -2955.423711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73221 -38.85346 -37.94255 -35.33726 -34.29005 -32.99744 -32.02045 -28.21980 -27.26518 -26.60563 -24.31495 -23.53695 -23.22495 -22.53777 -20.95950 -19.14381 -18.34406 -17.63626 -16.94958 -16.77429 -16.55702 -15.52688 -15.27165 -15.17845 -14.73567 -14.59368 -14.50181 -14.13472 -13.93824 -13.85850 -13.54801 -13.00075 -12.86767 -12.66133 -12.63804 -12.53014 -12.39908 -12.12142 -12.02735 -11.88004 -11.79121 -11.57572 -11.31230 -11.10820 -10.91595 -10.87113 -10.52318 -10.38212 -9.48179 -8.12357 -6.28044 1.39691 1.41483 1.48909 1.64103 2.07441 2.42179 2.73689 3.13851 3.49068 3.62596 3.86904 3.93056 4.12048 4.24260 4.30308 4.36344 4.41666 4.50288 4.54031 4.62296 4.72925 4.79974 4.80755 4.85019 4.88811 4.95259 4.99038 5.03906 5.09132 5.11843 5.21144 5.24902 5.28174 5.41010 5.46828 5.49895 5.57513 5.59139 5.90767 6.11635 6.32350 6.59132 6.80951 7.24649 7.40085 8.91200 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.005326 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.141387 B = 5255.640998 C = 5418.625964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.041 4.041 3 C -0.160 4.160 4 C -0.159 4.159 5 C 0.540 3.460 6 O -0.599 6.599 7 N -0.599 5.599 8 C 0.108 3.892 9 C -0.130 4.130 10 C -0.104 4.104 11 C 0.043 3.957 12 H -0.018 1.018 13 C -0.541 4.541 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.913 5.913 17 Si 0.956 3.044 18 H -0.281 1.281 19 H -0.267 1.267 20 H -0.277 1.277 21 C 0.129 3.871 22 C -0.148 4.148 23 C -0.149 4.149 24 H 0.021 0.979 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.262 0.738 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.133 0.867 42 H 0.144 0.856 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 -2.526 -19.220 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.059 4.059 3 C -0.217 4.217 4 C -0.162 4.162 5 C 0.329 3.671 6 O -0.480 6.480 7 N -0.329 5.329 8 C -0.014 4.014 9 C -0.168 4.168 10 C -0.143 4.143 11 C 0.024 3.976 12 H 0.001 0.999 13 C -0.579 4.579 14 H 0.069 0.931 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.781 3.219 18 H -0.206 1.206 19 H -0.192 1.192 20 H -0.203 1.203 21 C 0.006 3.994 22 C -0.185 4.185 23 C -0.186 4.186 24 H 0.041 0.959 25 H 0.098 0.902 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.824 -2.785 -18.806 19.029 hybrid contribution -0.536 0.370 1.885 1.995 sum 0.288 -2.415 -16.921 17.094 Atomic orbital electron populations 1.21794 0.95659 1.01404 1.01313 1.20654 0.95188 0.96367 0.93700 1.22234 1.02331 0.94999 1.02093 1.21498 1.02891 0.98591 0.93206 1.20337 0.81614 0.79058 0.86071 1.90617 1.32450 1.60350 1.64619 1.48285 1.29329 1.28710 1.26616 1.22345 0.83515 0.99672 0.95842 1.21968 0.98389 1.00126 0.96318 1.21412 0.99508 0.97060 0.96287 1.18847 0.92491 0.94242 0.91999 0.99946 1.21408 0.97929 1.36578 1.02007 0.93091 1.25689 0.95048 0.96424 1.00969 1.70001 1.06554 1.46793 1.31827 0.85652 0.77870 0.79341 0.79037 1.20599 1.19179 1.20266 1.21539 0.96963 0.96100 0.84797 1.23102 1.01304 0.89930 1.04171 1.23296 0.89146 1.01208 1.04970 0.95936 0.90238 0.93074 0.86907 0.90270 0.90693 0.94236 0.86412 0.90225 0.93962 0.89053 0.94388 0.91914 0.92873 0.93427 0.92107 0.90933 0.84910 0.83858 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.86 71.98 0.64 -2.59 16 2 C -0.04 -0.77 2.75 -10.79 -0.03 -0.80 16 3 C -0.16 -2.82 7.42 71.98 0.53 -2.29 16 4 C -0.16 -4.02 0.81 -52.93 -0.04 -4.06 16 5 C 0.54 20.28 5.59 87.66 0.49 20.77 16 6 O -0.60 -28.24 16.43 -3.04 -0.05 -28.29 16 7 N -0.60 -22.65 2.60 -818.89 -2.13 -24.79 16 8 C 0.11 3.15 3.95 86.36 0.34 3.49 16 9 C -0.13 -4.49 6.08 30.67 0.19 -4.30 16 10 C -0.10 -4.79 4.96 30.62 0.15 -4.64 16 11 C 0.04 2.26 2.25 -11.46 -0.03 2.24 16 12 H -0.02 -1.07 8.14 -2.39 -0.02 -1.08 16 13 C -0.54 -30.75 8.56 25.60 0.22 -30.53 16 14 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 15 C 0.02 1.01 5.30 84.66 0.45 1.46 16 16 N -0.91 -53.01 11.32 21.45 0.24 -52.76 16 17 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 C 0.13 5.94 5.66 86.36 0.49 6.43 16 22 C -0.15 -3.30 9.86 30.62 0.30 -3.00 16 23 C -0.15 -2.96 7.83 30.62 0.24 -2.72 16 24 H 0.02 0.64 7.67 -2.39 -0.02 0.62 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.11 1.43 8.10 -2.39 -0.02 1.41 16 28 H 0.08 1.12 6.60 -2.39 -0.02 1.10 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 0.92 5.59 -2.39 -0.01 0.91 16 31 H 0.12 2.65 3.17 -2.38 -0.01 2.64 16 32 H 0.08 2.11 7.09 -2.39 -0.02 2.09 16 33 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 3.29 6.05 -2.39 -0.01 3.27 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.05 2.44 7.00 -2.39 -0.02 2.42 16 39 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.08 1.99 8.11 -2.38 -0.02 1.97 16 Total: -1.00 -70.67 326.11 5.00 -65.67 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.97 Total: 14.43 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 3.94 Total: -20.55 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -1.89 Total: -77.55 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.05 Total: -28.29 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -70.67 5.00 -65.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697585873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.667 kcal (2) G-P(sol) polarization free energy of solvation -70.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds