Wall clock time and date at job start Mon Mar 30 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 C 1.53005 * 109.46662 * 240.00095 * 2 1 3 5 5 C 1.52998 * 109.47432 * 120.00068 * 2 1 3 6 6 H 1.08997 * 115.55953 * 274.31006 * 5 2 1 7 7 C 1.53005 * 117.50021 * 128.61644 * 5 2 1 8 8 C 1.52999 * 59.99926 * 252.51306 * 7 5 2 9 9 H 1.09000 * 117.49639 * 107.51815 * 8 7 5 10 10 C 1.50696 * 117.49776 * 252.50507 * 8 7 5 11 11 O 1.21283 * 119.99523 * 93.37444 * 10 8 7 12 12 N 1.34776 * 120.00296 * 273.65405 * 10 8 7 13 13 C 1.46499 * 119.99797 * 174.39192 * 12 10 8 14 14 C 1.53006 * 109.47028 * 183.80107 * 13 12 10 15 15 C 1.50700 * 115.54824 * 64.54105 * 14 13 12 16 16 H 1.07997 * 120.00056 * 265.38470 * 15 14 13 17 17 C 1.37879 * 119.99917 * 85.38268 * 15 14 13 18 18 N 1.31515 * 119.99972 * 174.18520 * 17 15 14 19 19 Si 1.86798 * 120.00193 * 354.19043 * 17 15 14 20 20 H 1.48503 * 109.47192 * 85.84850 * 19 17 15 21 21 H 1.48500 * 109.47316 * 205.85069 * 19 17 15 22 22 H 1.48506 * 109.46884 * 325.85197 * 19 17 15 23 23 C 1.52998 * 117.49930 * 278.87301 * 14 13 12 24 24 C 1.52997 * 117.49952 * 210.21172 * 14 13 12 25 25 H 1.09002 * 109.46525 * 299.99762 * 1 2 3 26 26 H 1.09000 * 109.46988 * 59.99601 * 1 2 3 27 27 H 1.08997 * 109.47040 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47156 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47267 * 300.00201 * 3 2 1 30 30 H 1.08998 * 109.47217 * 60.00106 * 3 2 1 31 31 H 1.08997 * 109.46987 * 299.99535 * 4 2 1 32 32 H 1.09000 * 109.47171 * 60.00415 * 4 2 1 33 33 H 1.09003 * 109.46951 * 180.02562 * 4 2 1 34 34 H 1.08995 * 117.49698 * 145.02148 * 7 5 2 35 35 H 1.09003 * 117.49316 * 0.02562 * 7 5 2 36 36 H 0.96990 * 119.99881 * 354.39420 * 12 10 8 37 37 H 1.09006 * 109.47442 * 303.80112 * 13 12 10 38 38 H 1.08999 * 109.47633 * 63.80500 * 13 12 10 39 39 H 0.97000 * 119.99999 * 180.02562 * 18 17 15 40 40 H 1.09001 * 117.49552 * 359.97438 * 23 14 13 41 41 H 1.08996 * 117.49986 * 145.01499 * 23 14 13 42 42 H 1.09002 * 117.49687 * 214.98185 * 24 14 13 43 43 H 1.08999 * 117.50019 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 2.1272 -0.1061 2.1448 7 6 3.0742 -1.8314 1.0513 8 6 1.6358 -2.1852 1.4342 9 1 1.0066 -2.6349 0.6661 10 6 1.3885 -2.6664 2.8407 11 8 1.0681 -1.8771 3.7041 12 7 1.5288 -3.9729 3.1405 13 6 1.4093 -4.4226 4.5296 14 6 1.7025 -5.9223 4.6072 15 6 3.1071 -6.3296 4.2435 16 1 3.3343 -6.6441 3.2357 17 6 4.1022 -6.3005 5.1975 18 7 5.2999 -6.7632 4.9127 19 14 3.7492 -5.6042 6.8945 20 1 3.1750 -6.6683 7.7567 21 1 5.0114 -5.1058 7.4975 22 1 2.7803 -4.4847 6.7784 23 6 0.5705 -6.8834 4.2389 24 6 0.9951 -6.7248 5.7010 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 3.8416 -1.9466 1.8166 35 1 3.3914 -2.0476 0.0311 36 1 1.7090 -4.6153 2.4366 37 1 2.1231 -3.8803 5.1499 38 1 0.3978 -4.2312 4.8878 39 1 5.9998 -6.7431 5.5840 40 1 -0.3832 -6.4473 3.9417 41 1 0.8417 -7.8104 3.7338 42 1 1.5455 -7.5475 6.1573 43 1 0.3211 -6.1843 6.3656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699774616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:40 Heat of formation + Delta-G solvation = -6.795603 kcal Electronic energy + Delta-G solvation = -20527.300407 eV Core-core repulsion = 17573.446621 eV Total energy + Delta-G solvation = -2953.853786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.92637 -38.18790 -36.91455 -33.80384 -33.33183 -32.14050 -27.57315 -27.37272 -27.05274 -25.44569 -23.28470 -22.75479 -21.69008 -19.69188 -19.08631 -18.38915 -17.04095 -16.38569 -15.64887 -15.23112 -15.02827 -14.39603 -14.20887 -14.05627 -13.75612 -13.25651 -12.92543 -12.69207 -12.55994 -12.44479 -12.32610 -12.05455 -11.78533 -11.65715 -11.23070 -11.16906 -11.05914 -10.66118 -10.62807 -10.55023 -10.21119 -10.13375 -9.89473 -9.75276 -9.33990 -9.18540 -8.61859 -8.60677 -8.25285 -6.17348 -4.21002 3.04774 3.28281 3.37443 3.41675 3.58895 3.98077 4.38715 4.59241 4.70445 4.84268 4.90608 5.03129 5.10469 5.13194 5.21002 5.45212 5.48025 5.55962 5.57538 5.68278 5.69912 5.75608 5.81745 5.89959 5.97372 6.01367 6.06678 6.08081 6.10148 6.22465 6.23653 6.28352 6.40158 6.41748 6.52551 6.70466 6.99902 7.06679 7.16311 7.67120 8.20975 8.40038 8.80688 8.83346 9.46330 10.94011 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.004637 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.178137 B = 6036.981903 C = 6306.199497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.039 4.039 3 C -0.138 4.138 4 C -0.146 4.146 5 C -0.112 4.112 6 H 0.112 0.888 7 C -0.157 4.157 8 C -0.179 4.179 9 H 0.122 0.878 10 C 0.535 3.465 11 O -0.558 6.558 12 N -0.698 5.698 13 C 0.151 3.849 14 C -0.017 4.017 15 C -0.489 4.489 16 H 0.078 0.922 17 C 0.082 3.918 18 N -0.895 5.895 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.257 1.257 23 C -0.178 4.178 24 C -0.192 4.192 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.404 0.596 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.265 0.735 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 10.592 -10.304 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.039 4.039 3 C -0.195 4.195 4 C -0.204 4.204 5 C -0.131 4.131 6 H 0.130 0.870 7 C -0.195 4.195 8 C -0.200 4.200 9 H 0.140 0.860 10 C 0.320 3.680 11 O -0.437 6.437 12 N -0.346 5.346 13 C 0.028 3.972 14 C -0.019 4.019 15 C -0.526 4.526 16 H 0.096 0.904 17 C -0.121 4.121 18 N -0.531 5.531 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.220 1.220 22 H -0.181 1.181 23 C -0.215 4.215 24 C -0.230 4.230 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.239 0.761 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.316 11.097 -9.591 16.391 hybrid contribution 0.027 -0.185 0.748 0.771 sum -7.289 10.912 -8.843 15.824 Atomic orbital electron populations 1.21842 0.94320 1.01970 1.01501 1.20073 0.95507 0.95131 0.93171 1.21831 1.01141 0.94942 1.01609 1.22031 1.01304 1.00348 0.96670 1.22390 1.01725 0.89595 0.99391 0.87003 1.23238 0.91134 1.01751 1.03332 1.22211 1.01010 1.00532 0.96285 0.85988 1.19644 0.77074 0.82475 0.88777 1.90641 1.48395 1.54977 1.49686 1.45791 1.70595 1.07521 1.10687 1.21260 0.98958 0.95446 0.81570 1.19620 0.94279 0.88089 0.99863 1.20163 0.88786 1.45189 0.98484 0.90413 1.24932 0.94756 0.93897 0.98552 1.69891 1.02932 1.45078 1.35220 0.86967 0.77718 0.80520 0.84617 1.20073 1.21978 1.18147 1.22817 0.98303 1.02459 0.97922 1.22965 1.04225 1.04244 0.91543 0.92415 0.92905 0.92590 0.92483 0.92748 0.92526 0.92421 0.92758 0.92061 0.88272 0.87427 0.76130 0.91421 0.94008 0.92480 0.90918 0.89388 0.89088 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.31 37.16 0.31 -1.08 16 2 C -0.04 -0.39 0.88 -154.51 -0.14 -0.53 16 3 C -0.14 -1.26 8.46 37.16 0.31 -0.94 16 4 C -0.15 -1.29 7.07 37.16 0.26 -1.03 16 5 C -0.11 -1.43 4.66 -90.62 -0.42 -1.86 16 6 H 0.11 1.64 7.86 -51.93 -0.41 1.23 16 7 C -0.16 -2.02 9.27 -26.73 -0.25 -2.26 16 8 C -0.18 -2.51 5.03 -91.77 -0.46 -2.97 16 9 H 0.12 1.46 7.07 -51.93 -0.37 1.09 16 10 C 0.53 9.89 7.52 -10.99 -0.08 9.81 16 11 O -0.56 -12.26 16.56 5.56 0.09 -12.17 16 12 N -0.70 -13.23 5.45 -60.29 -0.33 -13.56 16 13 C 0.15 3.24 5.20 -4.04 -0.02 3.21 16 14 C -0.02 -0.38 0.84 -155.66 -0.13 -0.51 16 15 C -0.49 -12.81 9.23 -34.44 -0.32 -13.13 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 19 Si 0.87 21.41 25.26 -169.99 -4.29 17.11 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.26 -6.12 5.38 56.52 0.30 -5.82 16 23 C -0.18 -3.41 9.96 -26.69 -0.27 -3.68 16 24 C -0.19 -3.95 7.83 -26.70 -0.21 -4.16 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.57 7.29 -51.93 -0.38 0.19 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 7.07 -51.93 -0.37 0.14 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.53 6.97 -51.93 -0.36 0.16 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.11 1.15 5.85 -51.93 -0.30 0.85 16 36 H 0.40 7.08 8.43 -40.82 -0.34 6.74 16 37 H 0.07 1.62 5.91 -51.93 -0.31 1.31 16 38 H 0.04 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.09 1.97 7.66 -51.93 -0.40 1.57 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -30.14 340.53 -7.67 -37.81 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.54 Total: 8.22 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.51 Total: -16.96 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.44 Total: -39.15 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.29 Total: 17.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.14 -7.67 -37.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699774616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.015 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds