Wall clock time and date at job start Mon Mar 30 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47264 * 2 1 4 4 C 1.53005 * 109.46662 * 240.00095 * 2 1 3 5 5 C 1.52998 * 109.47432 * 120.00068 * 2 1 3 6 6 H 1.08997 * 115.55953 * 274.31006 * 5 2 1 7 7 C 1.53005 * 117.50021 * 128.61644 * 5 2 1 8 8 C 1.52999 * 59.99926 * 252.51306 * 7 5 2 9 9 H 1.09000 * 117.49639 * 107.51815 * 8 7 5 10 10 C 1.50696 * 117.49776 * 252.50507 * 8 7 5 11 11 O 1.21283 * 119.99523 * 93.37444 * 10 8 7 12 12 N 1.34776 * 120.00296 * 273.65405 * 10 8 7 13 13 C 1.46499 * 119.99797 * 174.39192 * 12 10 8 14 14 C 1.53006 * 109.47028 * 183.80107 * 13 12 10 15 15 C 1.50700 * 115.54824 * 64.54105 * 14 13 12 16 16 H 1.07997 * 120.00056 * 265.38470 * 15 14 13 17 17 C 1.37879 * 119.99917 * 85.38268 * 15 14 13 18 18 N 1.31515 * 119.99972 * 174.18520 * 17 15 14 19 19 Si 1.86798 * 120.00193 * 354.19043 * 17 15 14 20 20 H 1.48503 * 109.47192 * 85.84850 * 19 17 15 21 21 H 1.48500 * 109.47316 * 205.85069 * 19 17 15 22 22 H 1.48506 * 109.46884 * 325.85197 * 19 17 15 23 23 C 1.52998 * 117.49930 * 278.87301 * 14 13 12 24 24 C 1.52997 * 117.49952 * 210.21172 * 14 13 12 25 25 H 1.09002 * 109.46525 * 299.99762 * 1 2 3 26 26 H 1.09000 * 109.46988 * 59.99601 * 1 2 3 27 27 H 1.08997 * 109.47040 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47156 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.47267 * 300.00201 * 3 2 1 30 30 H 1.08998 * 109.47217 * 60.00106 * 3 2 1 31 31 H 1.08997 * 109.46987 * 299.99535 * 4 2 1 32 32 H 1.09000 * 109.47171 * 60.00415 * 4 2 1 33 33 H 1.09003 * 109.46951 * 180.02562 * 4 2 1 34 34 H 1.08995 * 117.49698 * 145.02148 * 7 5 2 35 35 H 1.09003 * 117.49316 * 0.02562 * 7 5 2 36 36 H 0.96990 * 119.99881 * 354.39420 * 12 10 8 37 37 H 1.09006 * 109.47442 * 303.80112 * 13 12 10 38 38 H 1.08999 * 109.47633 * 63.80500 * 13 12 10 39 39 H 0.97000 * 119.99999 * 180.02562 * 18 17 15 40 40 H 1.09001 * 117.49552 * 359.97438 * 23 14 13 41 41 H 1.08996 * 117.49986 * 145.01499 * 23 14 13 42 42 H 1.09002 * 117.49687 * 214.98185 * 24 14 13 43 43 H 1.08999 * 117.50019 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0401 -0.7212 1.2492 6 1 2.1272 -0.1061 2.1448 7 6 3.0742 -1.8314 1.0513 8 6 1.6358 -2.1852 1.4342 9 1 1.0066 -2.6349 0.6661 10 6 1.3885 -2.6664 2.8407 11 8 1.0681 -1.8771 3.7041 12 7 1.5288 -3.9729 3.1405 13 6 1.4093 -4.4226 4.5296 14 6 1.7025 -5.9223 4.6072 15 6 3.1071 -6.3296 4.2435 16 1 3.3343 -6.6441 3.2357 17 6 4.1022 -6.3005 5.1975 18 7 5.2999 -6.7632 4.9127 19 14 3.7492 -5.6042 6.8945 20 1 3.1750 -6.6683 7.7567 21 1 5.0114 -5.1058 7.4975 22 1 2.7803 -4.4847 6.7784 23 6 0.5705 -6.8834 4.2389 24 6 0.9951 -6.7248 5.7010 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 3.8416 -1.9466 1.8166 35 1 3.3914 -2.0476 0.0311 36 1 1.7090 -4.6153 2.4366 37 1 2.1231 -3.8803 5.1499 38 1 0.3978 -4.2312 4.8878 39 1 5.9998 -6.7431 5.5840 40 1 -0.3832 -6.4473 3.9417 41 1 0.8417 -7.8104 3.7338 42 1 1.5455 -7.5475 6.1573 43 1 0.3211 -6.1843 6.3656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699774616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:39 Heat of formation + Delta-G solvation = -24.945696 kcal Electronic energy + Delta-G solvation = -20528.087454 eV Core-core repulsion = 17573.446621 eV Total energy + Delta-G solvation = -2954.640833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20790 -39.48561 -38.51285 -35.02341 -34.71238 -34.21783 -28.84722 -28.19071 -28.09376 -27.36725 -24.59275 -23.75617 -23.30214 -21.29133 -20.74539 -19.29470 -18.63019 -17.98014 -17.05955 -16.81640 -16.60979 -15.75756 -15.66388 -15.06222 -14.82496 -14.78805 -14.54042 -14.30926 -13.94884 -13.65361 -13.44353 -13.14541 -13.11144 -12.57506 -12.55308 -12.45555 -12.21271 -12.06451 -12.00256 -11.92408 -11.68305 -11.47493 -11.19815 -10.97588 -10.88657 -10.85818 -10.66842 -10.33299 -9.89252 -8.31627 -6.36497 1.31820 1.37024 1.45337 1.60533 2.22229 2.34232 2.82148 3.03453 3.22855 3.66210 3.78962 3.85378 4.00395 4.02428 4.20642 4.28367 4.34365 4.36508 4.40728 4.49941 4.62510 4.75836 4.83715 4.85893 4.86087 4.86848 4.97390 5.03224 5.08187 5.10632 5.13990 5.20276 5.25517 5.28771 5.40831 5.47670 5.53269 5.56347 5.58396 5.68949 6.27670 6.68302 6.73918 7.31225 7.34004 8.83039 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.004637 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.178137 B = 6036.981903 C = 6306.199497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.035 4.035 3 C -0.138 4.138 4 C -0.146 4.146 5 C -0.106 4.106 6 H 0.086 0.914 7 C -0.151 4.151 8 C -0.183 4.183 9 H 0.150 0.850 10 C 0.531 3.469 11 O -0.596 6.596 12 N -0.697 5.697 13 C 0.160 3.840 14 C -0.041 4.041 15 C -0.476 4.476 16 H 0.047 0.953 17 C 0.031 3.969 18 N -0.942 5.942 19 Si 0.922 3.078 20 H -0.261 1.261 21 H -0.301 1.301 22 H -0.248 1.248 23 C -0.150 4.150 24 C -0.191 4.191 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.411 0.589 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.264 0.736 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 11.144 -11.578 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.035 4.035 3 C -0.195 4.195 4 C -0.203 4.203 5 C -0.125 4.125 6 H 0.104 0.896 7 C -0.188 4.188 8 C -0.204 4.204 9 H 0.168 0.832 10 C 0.318 3.682 11 O -0.478 6.478 12 N -0.345 5.345 13 C 0.035 3.965 14 C -0.042 4.042 15 C -0.514 4.514 16 H 0.065 0.935 17 C -0.168 4.168 18 N -0.581 5.581 19 Si 0.748 3.252 20 H -0.186 1.186 21 H -0.229 1.229 22 H -0.172 1.172 23 C -0.187 4.187 24 C -0.229 4.229 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.153 0.847 36 H 0.247 0.753 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.163 11.638 -10.882 18.380 hybrid contribution 0.585 -0.362 1.091 1.290 sum -8.578 11.277 -9.791 17.222 Atomic orbital electron populations 1.21847 0.94100 1.01911 1.01754 1.20100 0.95628 0.95462 0.92340 1.21836 1.01214 0.94395 1.02066 1.22027 1.01510 1.00444 0.96275 1.22438 1.01287 0.88916 0.99866 0.89558 1.23300 0.89949 1.01459 1.04069 1.22216 1.02409 1.01716 0.94023 0.83246 1.20384 0.75744 0.81769 0.90261 1.90617 1.50066 1.55762 1.51393 1.45796 1.70575 1.08119 1.10030 1.20991 0.98613 0.94338 0.82521 1.19444 0.93042 0.88974 1.02759 1.20324 0.90964 1.43242 0.96859 0.93517 1.25617 0.94637 0.94579 1.01918 1.70011 1.04063 1.47635 1.36417 0.86184 0.77389 0.80495 0.81164 1.18574 1.22857 1.17181 1.22855 0.98000 1.01157 0.96688 1.23023 1.04017 1.03420 0.92465 0.93840 0.90996 0.92804 0.92420 0.90992 0.93399 0.92185 0.91213 0.91775 0.90497 0.84656 0.75293 0.94457 0.92805 0.92666 0.87905 0.89467 0.90328 0.88496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.31 71.98 0.60 -1.87 16 2 C -0.04 -0.64 0.88 -52.18 -0.05 -0.68 16 3 C -0.14 -2.26 8.46 71.98 0.61 -1.65 16 4 C -0.15 -2.10 7.07 71.98 0.51 -1.59 16 5 C -0.11 -2.62 4.66 -10.79 -0.05 -2.67 16 6 H 0.09 2.59 7.86 -2.39 -0.02 2.57 16 7 C -0.15 -3.70 9.27 30.60 0.28 -3.42 16 8 C -0.18 -4.90 5.03 -11.54 -0.06 -4.96 16 9 H 0.15 3.18 7.07 -2.39 -0.02 3.16 16 10 C 0.53 19.43 7.52 87.66 0.66 20.09 16 11 O -0.60 -26.41 16.56 -3.04 -0.05 -26.46 16 12 N -0.70 -25.93 5.45 -463.05 -2.52 -28.45 16 13 C 0.16 6.67 5.20 86.38 0.45 7.12 16 14 C -0.04 -1.76 0.84 -52.93 -0.04 -1.80 16 15 C -0.48 -25.16 9.23 25.60 0.24 -24.92 16 16 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 17 C 0.03 1.73 5.47 84.65 0.46 2.19 16 18 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 19 Si 0.92 44.31 25.26 68.60 1.73 46.04 16 20 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 22 H -0.25 -11.47 5.38 99.48 0.53 -10.94 16 23 C -0.15 -5.33 9.96 30.62 0.30 -5.02 16 24 C -0.19 -7.40 7.83 30.62 0.24 -7.16 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.97 7.29 -2.39 -0.02 0.96 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.85 7.07 -2.39 -0.02 0.83 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.90 6.97 -2.39 -0.02 0.88 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.14 2.56 5.85 -2.39 -0.01 2.55 16 36 H 0.41 14.04 8.43 -92.72 -0.78 13.25 16 37 H 0.04 1.78 5.91 -2.38 -0.01 1.77 16 38 H 0.05 2.12 8.10 -2.39 -0.02 2.10 16 39 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 40 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.08 3.25 7.66 -2.39 -0.02 3.23 16 43 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -66.27 340.53 3.64 -62.63 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.03 Total: 29.28 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 4.15 Total: -26.34 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -2.22 Total: -85.15 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.73 Total: 46.04 kcal Total: -66.27 3.64 -62.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699774616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.686 kcal (2) G-P(sol) polarization free energy of solvation -66.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds