Wall clock time and date at job start Mon Mar 30 2020 06:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.08996 * 115.55502 * 154.27731 * 5 2 1 7 7 C 1.53006 * 117.49534 * 8.61356 * 5 2 1 8 8 C 1.52997 * 117.50019 * 299.99201 * 5 2 1 9 9 H 1.09002 * 117.49932 * 359.97438 * 8 5 2 10 10 C 1.50703 * 117.50075 * 214.97761 * 8 5 2 11 11 O 1.21280 * 119.99553 * 359.97438 * 10 8 5 12 12 N 1.34772 * 120.00364 * 179.97438 * 10 8 5 13 13 C 1.47431 * 125.64878 * 0.02732 * 12 10 8 14 14 C 1.54904 * 104.83296 * 204.09263 * 13 12 10 15 15 C 1.55160 * 101.58166 * 322.98668 * 14 13 12 16 16 H 1.08998 * 110.71822 * 277.14288 * 15 14 13 17 17 C 1.50701 * 110.72240 * 153.86672 * 15 14 13 18 18 H 1.07995 * 119.99567 * 241.45192 * 17 15 14 19 19 C 1.37882 * 119.99938 * 61.45422 * 17 15 14 20 20 N 1.31510 * 119.99661 * 359.97438 * 19 17 15 21 21 Si 1.86791 * 119.99899 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47165 * 89.99724 * 21 19 17 23 23 H 1.48499 * 109.47268 * 209.99750 * 21 19 17 24 24 H 1.48504 * 109.47143 * 330.00140 * 21 19 17 25 25 C 1.47018 * 125.64911 * 179.71138 * 12 10 8 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09002 * 117.50034 * 359.97438 * 7 5 2 36 36 H 1.09000 * 117.50068 * 145.02333 * 7 5 2 37 37 H 1.09006 * 110.36350 * 322.92649 * 13 12 10 38 38 H 1.08995 * 110.37164 * 85.13926 * 13 12 10 39 39 H 1.09004 * 111.00814 * 81.05600 * 14 13 12 40 40 H 1.08996 * 111.00510 * 204.87500 * 14 13 12 41 41 H 0.97003 * 119.99498 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.88858 * 298.39251 * 25 12 10 43 43 H 1.09006 * 109.88210 * 59.56548 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.0320 -0.4257 -1.5907 7 6 1.0103 -1.1019 -2.3150 8 6 1.6360 -2.1853 -1.4341 9 1 1.0071 -2.6348 -0.6656 10 6 2.6401 -3.1088 -2.0744 11 8 3.7210 -2.6822 -2.4216 12 7 2.3370 -4.4086 -2.2612 13 6 1.0662 -5.0567 -1.8889 14 6 1.4202 -6.5551 -1.7185 15 6 2.4617 -6.7598 -2.8502 16 1 1.9648 -6.9373 -3.8040 17 6 3.3970 -7.8930 -2.5155 18 1 4.4555 -7.7062 -2.4103 19 6 2.9014 -9.1681 -2.3436 20 7 1.6124 -9.3953 -2.4713 21 14 4.0609 -10.5728 -1.9294 22 1 4.1883 -10.6911 -0.4546 23 1 3.5204 -11.8404 -2.4828 24 1 5.3960 -10.3037 -2.5215 25 6 3.2164 -5.4138 -2.8758 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 -0.0304 -0.8389 -2.1260 36 1 1.3251 -1.0572 -3.3576 37 1 0.6916 -4.6463 -0.9511 38 1 0.3281 -4.9272 -2.6804 39 1 1.8638 -6.7430 -0.7407 40 1 0.5437 -7.1838 -1.8749 41 1 1.2637 -10.2923 -2.3500 42 1 3.4399 -5.1315 -3.9046 43 1 4.1402 -5.4980 -2.3032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704087182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:29 Heat of formation + Delta-G solvation = -31.805935 kcal Electronic energy + Delta-G solvation = -20582.616264 eV Core-core repulsion = 17627.677949 eV Total energy + Delta-G solvation = -2954.938315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05802 -38.36537 -36.58847 -33.81345 -33.00298 -30.29904 -28.42981 -27.54930 -27.39241 -25.56352 -23.59183 -22.89008 -21.79800 -19.69817 -18.63607 -18.35316 -17.11497 -16.39619 -15.64170 -15.30229 -14.77229 -14.56311 -14.27102 -13.92226 -13.60592 -12.99295 -12.68018 -12.59027 -12.53919 -12.43408 -12.12819 -11.80186 -11.66822 -11.29494 -11.27557 -11.21761 -11.09899 -11.03401 -10.79509 -10.66845 -10.48870 -10.20269 -9.98150 -9.76602 -9.50260 -9.26375 -8.97390 -8.49233 -7.95410 -6.11379 -4.14576 2.90371 3.27170 3.34079 3.37684 3.52379 3.94196 4.38128 4.51614 4.66117 4.79804 4.96489 5.02481 5.09314 5.22319 5.27879 5.41501 5.51324 5.53855 5.60739 5.65312 5.67835 5.78540 5.82043 5.87541 5.93220 5.97790 6.04398 6.08453 6.15525 6.25227 6.27191 6.33050 6.36034 6.65940 6.86460 7.02632 7.13325 7.47932 7.70027 7.87846 8.18047 8.28091 8.69100 8.86851 9.50278 10.98291 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.003879 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.362095 B = 7216.072866 C = 7278.223320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.137 4.137 4 C -0.141 4.141 5 C -0.110 4.110 6 H 0.115 0.885 7 C -0.154 4.154 8 C -0.178 4.178 9 H 0.120 0.880 10 C 0.548 3.452 11 O -0.558 6.558 12 N -0.606 5.606 13 C 0.093 3.907 14 C -0.107 4.107 15 C 0.044 3.956 16 H 0.039 0.961 17 C -0.515 4.515 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.889 5.889 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.111 3.889 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.261 0.739 42 H 0.048 0.952 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 16.559 5.013 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.040 4.040 3 C -0.195 4.195 4 C -0.198 4.198 5 C -0.129 4.129 6 H 0.133 0.867 7 C -0.191 4.191 8 C -0.198 4.198 9 H 0.137 0.863 10 C 0.337 3.663 11 O -0.438 6.438 12 N -0.337 5.337 13 C -0.030 4.030 14 C -0.146 4.146 15 C 0.025 3.975 16 H 0.057 0.943 17 C -0.553 4.553 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.527 5.527 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.011 4.011 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.903 16.688 4.841 18.054 hybrid contribution 0.464 -1.029 0.257 1.158 sum -4.439 15.659 5.098 17.055 Atomic orbital electron populations 1.22027 0.94683 1.01923 1.01692 1.20093 0.95225 0.95092 0.93586 1.21823 1.01181 0.94898 1.01550 1.21856 1.01460 1.00303 0.96179 1.22419 1.00050 0.93744 0.96684 0.86672 1.23167 0.98977 1.00327 0.96668 1.22241 1.02625 0.90948 1.04035 0.86267 1.19251 0.87049 0.81165 0.78874 1.90638 1.24540 1.75694 1.52951 1.48644 1.18006 1.07768 1.59308 1.22563 0.85556 0.96296 0.98539 1.22736 1.01332 0.89861 1.00668 1.19719 0.93258 0.89338 0.95206 0.94321 1.21035 0.93671 0.92131 1.48499 0.92270 1.24945 0.95156 0.98657 0.94968 1.69940 1.11856 1.21547 1.49333 0.86553 0.81131 0.81528 0.78585 1.20642 1.21190 1.19813 1.22345 0.94086 0.88697 0.95968 0.92177 0.92655 0.92422 0.92687 0.92489 0.92537 0.92481 0.92411 0.92758 0.87497 0.88628 0.92328 0.92312 0.92253 0.89739 0.92896 0.93391 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 7.07 37.16 0.26 -0.98 16 2 C -0.04 -0.39 0.88 -154.51 -0.14 -0.53 16 3 C -0.14 -1.19 8.46 37.15 0.31 -0.87 16 4 C -0.14 -1.43 8.31 37.16 0.31 -1.12 16 5 C -0.11 -1.37 4.66 -90.62 -0.42 -1.79 16 6 H 0.12 1.64 7.64 -51.93 -0.40 1.25 16 7 C -0.15 -1.82 9.27 -26.73 -0.25 -2.07 16 8 C -0.18 -2.52 4.38 -91.77 -0.40 -2.92 16 9 H 0.12 1.54 6.00 -51.93 -0.31 1.23 16 10 C 0.55 10.43 7.63 -10.99 -0.08 10.35 16 11 O -0.56 -12.41 16.59 5.56 0.09 -12.32 16 12 N -0.61 -12.00 3.33 -170.51 -0.57 -12.56 16 13 C 0.09 1.66 6.69 -2.53 -0.02 1.64 16 14 C -0.11 -2.33 5.75 -24.58 -0.14 -2.47 16 15 C 0.04 1.06 2.86 -89.93 -0.26 0.80 16 16 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.52 -13.76 8.50 -34.44 -0.29 -14.05 16 18 H 0.06 1.58 7.57 -52.49 -0.40 1.19 16 19 C 0.06 1.74 5.33 -17.82 -0.10 1.64 16 20 N -0.89 -24.32 12.11 55.43 0.67 -23.65 16 21 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.11 2.46 6.46 -3.06 -0.02 2.44 16 26 H 0.06 0.47 6.98 -51.93 -0.36 0.11 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.50 7.07 -51.93 -0.37 0.14 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.62 7.28 -51.93 -0.38 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.11 1.02 5.85 -51.93 -0.30 0.72 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.89 7.01 -51.93 -0.36 0.53 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.35 8.04 -51.93 -0.42 0.94 16 40 H 0.08 1.92 7.54 -51.93 -0.39 1.53 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.43 7.66 -51.93 -0.40 1.03 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -29.08 337.52 -8.42 -37.49 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.45 Total: 0.08 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.23 Total: -9.93 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.10 Total: -36.21 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.08 -8.42 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704087182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.688 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds