Wall clock time and date at job start Mon Mar 30 2020 06:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.08996 * 115.55502 * 154.27731 * 5 2 1 7 7 C 1.53006 * 117.49534 * 8.61356 * 5 2 1 8 8 C 1.52997 * 117.50019 * 299.99201 * 5 2 1 9 9 H 1.09002 * 117.49932 * 359.97438 * 8 5 2 10 10 C 1.50703 * 117.50075 * 214.97761 * 8 5 2 11 11 O 1.21280 * 119.99553 * 359.97438 * 10 8 5 12 12 N 1.34772 * 120.00364 * 179.97438 * 10 8 5 13 13 C 1.47431 * 125.64878 * 0.02732 * 12 10 8 14 14 C 1.54904 * 104.83296 * 204.09263 * 13 12 10 15 15 C 1.55160 * 101.58166 * 322.98668 * 14 13 12 16 16 H 1.08998 * 110.71822 * 277.14288 * 15 14 13 17 17 C 1.50701 * 110.72240 * 153.86672 * 15 14 13 18 18 H 1.07995 * 119.99567 * 241.45192 * 17 15 14 19 19 C 1.37882 * 119.99938 * 61.45422 * 17 15 14 20 20 N 1.31510 * 119.99661 * 359.97438 * 19 17 15 21 21 Si 1.86791 * 119.99899 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47165 * 89.99724 * 21 19 17 23 23 H 1.48499 * 109.47268 * 209.99750 * 21 19 17 24 24 H 1.48504 * 109.47143 * 330.00140 * 21 19 17 25 25 C 1.47018 * 125.64911 * 179.71138 * 12 10 8 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 35 35 H 1.09002 * 117.50034 * 359.97438 * 7 5 2 36 36 H 1.09000 * 117.50068 * 145.02333 * 7 5 2 37 37 H 1.09006 * 110.36350 * 322.92649 * 13 12 10 38 38 H 1.08995 * 110.37164 * 85.13926 * 13 12 10 39 39 H 1.09004 * 111.00814 * 81.05600 * 14 13 12 40 40 H 1.08996 * 111.00510 * 204.87500 * 14 13 12 41 41 H 0.97003 * 119.99498 * 180.02562 * 20 19 17 42 42 H 1.08997 * 109.88858 * 298.39251 * 25 12 10 43 43 H 1.09006 * 109.88210 * 59.56548 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.0320 -0.4257 -1.5907 7 6 1.0103 -1.1019 -2.3150 8 6 1.6360 -2.1853 -1.4341 9 1 1.0071 -2.6348 -0.6656 10 6 2.6401 -3.1088 -2.0744 11 8 3.7210 -2.6822 -2.4216 12 7 2.3370 -4.4086 -2.2612 13 6 1.0662 -5.0567 -1.8889 14 6 1.4202 -6.5551 -1.7185 15 6 2.4617 -6.7598 -2.8502 16 1 1.9648 -6.9373 -3.8040 17 6 3.3970 -7.8930 -2.5155 18 1 4.4555 -7.7062 -2.4103 19 6 2.9014 -9.1681 -2.3436 20 7 1.6124 -9.3953 -2.4713 21 14 4.0609 -10.5728 -1.9294 22 1 4.1883 -10.6911 -0.4546 23 1 3.5204 -11.8404 -2.4828 24 1 5.3960 -10.3037 -2.5215 25 6 3.2164 -5.4138 -2.8758 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -0.2075 2.1393 35 1 -0.0304 -0.8389 -2.1260 36 1 1.3251 -1.0572 -3.3576 37 1 0.6916 -4.6463 -0.9511 38 1 0.3281 -4.9272 -2.6804 39 1 1.8638 -6.7430 -0.7407 40 1 0.5437 -7.1838 -1.8749 41 1 1.2637 -10.2923 -2.3500 42 1 3.4399 -5.1315 -3.9046 43 1 4.1402 -5.4980 -2.3032 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704087182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:29 Heat of formation + Delta-G solvation = -46.858827 kcal Electronic energy + Delta-G solvation = -20583.269007 eV Core-core repulsion = 17627.677949 eV Total energy + Delta-G solvation = -2955.591058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.37130 -39.62353 -38.18681 -35.01209 -34.72275 -32.11810 -30.13663 -28.26498 -28.09237 -27.33323 -25.14854 -23.81793 -23.28917 -21.52914 -20.02962 -19.31267 -18.74167 -18.05127 -16.97471 -16.75474 -16.52410 -16.06728 -15.28917 -14.97290 -14.68378 -14.48166 -14.30605 -14.13634 -13.65366 -13.39678 -13.14006 -13.09800 -13.03383 -12.93163 -12.69474 -12.55326 -12.44339 -12.31381 -12.06954 -11.93497 -11.62572 -11.46869 -11.40375 -11.17321 -10.98200 -10.89889 -10.77446 -10.52021 -9.60208 -8.17483 -6.27045 1.41366 1.43049 1.48898 1.52689 2.03807 2.42740 2.86082 3.14096 3.46293 3.75755 3.79821 3.96694 4.04666 4.11219 4.25551 4.28552 4.33534 4.43943 4.46670 4.62105 4.69621 4.76119 4.77173 4.84153 4.85207 4.97009 4.99326 5.09914 5.10591 5.14149 5.21284 5.24985 5.25367 5.35593 5.40986 5.51976 5.57377 5.57974 5.76153 5.85423 6.26026 6.63882 6.77900 7.15510 7.40417 8.91385 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.003879 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.362095 B = 7216.072866 C = 7278.223320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.036 4.036 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.107 4.107 6 H 0.090 0.910 7 C -0.134 4.134 8 C -0.187 4.187 9 H 0.140 0.860 10 C 0.542 3.458 11 O -0.599 6.599 12 N -0.611 5.611 13 C 0.105 3.895 14 C -0.098 4.098 15 C 0.039 3.961 16 H 0.018 0.982 17 C -0.539 4.539 18 H 0.048 0.952 19 C 0.024 3.976 20 N -0.909 5.909 21 Si 0.954 3.046 22 H -0.275 1.275 23 H -0.280 1.280 24 H -0.274 1.274 25 C 0.120 3.880 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.140 0.860 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.264 0.736 42 H 0.042 0.958 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.120 17.821 6.127 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 C -0.194 4.194 4 C -0.199 4.199 5 C -0.125 4.125 6 H 0.108 0.892 7 C -0.171 4.171 8 C -0.208 4.208 9 H 0.158 0.842 10 C 0.333 3.667 11 O -0.481 6.481 12 N -0.342 5.342 13 C -0.017 4.017 14 C -0.137 4.137 15 C 0.020 3.980 16 H 0.036 0.964 17 C -0.577 4.577 18 H 0.067 0.933 19 C -0.177 4.177 20 N -0.547 5.547 21 Si 0.779 3.221 22 H -0.200 1.200 23 H -0.205 1.205 24 H -0.199 1.199 25 C -0.003 4.003 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.158 0.842 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.681 17.958 5.961 20.066 hybrid contribution 1.065 -1.404 -0.124 1.766 sum -5.616 16.555 5.837 18.430 Atomic orbital electron populations 1.22027 0.92944 1.02359 1.02885 1.20119 0.96543 0.95181 0.91806 1.21821 1.00609 0.94329 1.02613 1.21877 1.00513 1.00275 0.97273 1.22472 0.99414 0.92378 0.98272 0.89216 1.23308 1.00428 0.97578 0.95796 1.22197 1.02489 0.90802 1.05323 0.84246 1.20151 0.87451 0.81046 0.78016 1.90614 1.26594 1.76298 1.54630 1.48720 1.18203 1.07931 1.59345 1.22556 0.84855 0.93220 1.01036 1.22502 0.99817 0.92765 0.98631 1.19634 0.93732 0.89574 0.95080 0.96375 1.21302 0.93697 0.93577 1.49141 0.93347 1.25615 0.96612 1.00677 0.94768 1.70022 1.12973 1.22141 1.49579 0.85623 0.79183 0.78781 0.78477 1.20044 1.20494 1.19855 1.22001 0.93683 0.88959 0.95620 0.91207 0.91342 0.92324 0.91125 0.93518 0.91967 0.93142 0.93986 0.90971 0.84241 0.89636 0.88715 0.90388 0.93809 0.90843 0.92664 0.93930 0.94153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 7.07 71.98 0.51 -1.36 16 2 C -0.04 -0.62 0.88 -52.18 -0.05 -0.67 16 3 C -0.14 -2.04 8.46 71.98 0.61 -1.44 16 4 C -0.14 -2.61 8.31 71.98 0.60 -2.01 16 5 C -0.11 -2.47 4.66 -10.79 -0.05 -2.52 16 6 H 0.09 2.57 7.64 -2.39 -0.02 2.55 16 7 C -0.13 -2.80 9.27 30.60 0.28 -2.51 16 8 C -0.19 -4.93 4.38 -11.54 -0.05 -4.98 16 9 H 0.14 3.12 6.00 -2.39 -0.01 3.10 16 10 C 0.54 20.46 7.63 87.66 0.67 21.13 16 11 O -0.60 -27.23 16.59 -3.03 -0.05 -27.28 16 12 N -0.61 -24.01 3.33 -811.76 -2.70 -26.71 16 13 C 0.10 3.55 6.69 86.85 0.58 4.14 16 14 C -0.10 -4.28 5.75 31.99 0.18 -4.10 16 15 C 0.04 1.92 2.86 -10.34 -0.03 1.89 16 16 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 17 C -0.54 -29.57 8.50 25.60 0.22 -29.35 16 18 H 0.05 2.68 7.57 -2.91 -0.02 2.66 16 19 C 0.02 1.27 5.33 84.66 0.45 1.72 16 20 N -0.91 -50.03 12.11 21.45 0.26 -49.77 16 21 Si 0.95 42.93 29.54 68.60 2.03 44.95 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 C 0.12 5.52 6.46 86.74 0.56 6.08 16 26 H 0.07 0.78 6.98 -2.39 -0.02 0.76 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.76 7.07 -2.38 -0.02 0.74 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.98 7.28 -2.39 -0.02 0.97 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.14 2.03 5.85 -2.39 -0.01 2.02 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.09 2.57 7.01 -2.38 -0.02 2.55 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 2.00 8.04 -2.38 -0.02 1.98 16 40 H 0.07 3.34 7.54 -2.39 -0.02 3.32 16 41 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 42 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 43 H 0.04 1.99 7.66 -2.38 -0.02 1.97 16 Total: -1.00 -64.23 337.52 4.99 -59.24 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.96 Total: 13.53 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 4.49 Total: -13.97 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -2.44 Total: -76.48 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -64.23 4.99 -59.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704087182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.382 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds