Wall clock time and date at job start Mon Mar 30 2020 06:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47258 * 2 1 4 4 C 1.53001 * 109.47307 * 239.99605 * 2 1 3 5 5 C 1.53005 * 109.47145 * 119.99614 * 2 1 3 6 6 H 1.08995 * 115.56372 * 212.85502 * 5 2 1 7 7 C 1.52998 * 117.49751 * 358.55045 * 5 2 1 8 8 C 1.52992 * 60.00173 * 107.48687 * 7 5 2 9 9 H 1.09000 * 117.49934 * 107.51284 * 8 7 5 10 10 C 1.50706 * 117.50056 * 252.50699 * 8 7 5 11 11 O 1.21288 * 119.99389 * 57.89443 * 10 8 7 12 12 N 1.34767 * 120.00511 * 237.89840 * 10 8 7 13 13 C 1.46499 * 120.00275 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.46867 * 90.00133 * 13 12 10 15 15 H 1.08003 * 120.00398 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00252 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99711 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47176 * 89.99595 * 18 16 14 20 20 H 1.48496 * 109.47036 * 209.99486 * 18 16 14 21 21 H 1.48500 * 109.47016 * 329.99777 * 18 16 14 22 22 C 1.46503 * 119.99893 * 0.02562 * 12 10 8 23 23 C 1.52998 * 117.49840 * 188.62058 * 22 12 10 24 24 C 1.52994 * 60.00043 * 252.50800 * 23 22 12 25 25 H 1.09002 * 109.47329 * 322.64039 * 1 2 3 26 26 H 1.09000 * 109.47076 * 82.63856 * 1 2 3 27 27 H 1.09004 * 109.47122 * 202.63770 * 1 2 3 28 28 H 1.09005 * 109.47373 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47264 * 299.99707 * 3 2 1 30 30 H 1.09001 * 109.47045 * 59.99823 * 3 2 1 31 31 H 1.08993 * 109.47107 * 270.72638 * 4 2 1 32 32 H 1.08993 * 109.47001 * 30.73206 * 4 2 1 33 33 H 1.09003 * 109.46704 * 150.72976 * 4 2 1 34 34 H 1.09007 * 117.49910 * 359.97438 * 7 5 2 35 35 H 1.09005 * 117.49831 * 214.97847 * 7 5 2 36 36 H 1.08997 * 109.47213 * 330.00304 * 13 12 10 37 37 H 1.09001 * 109.47331 * 209.99855 * 13 12 10 38 38 H 0.97006 * 120.00271 * 180.02562 * 17 16 14 39 39 H 1.09000 * 115.55019 * 334.32375 * 22 12 10 40 40 H 1.09002 * 117.50033 * 359.97438 * 23 22 12 41 41 H 1.09005 * 117.49828 * 145.01264 * 23 22 12 42 42 H 1.09001 * 117.49667 * 252.51441 * 24 23 22 43 43 H 1.08999 * 117.50135 * 107.49065 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 2.9755 -0.3432 1.6616 7 6 0.9963 -1.2505 2.2350 8 6 1.7789 -2.2252 1.3528 9 1 2.5425 -2.8370 1.8333 10 6 1.0392 -2.8829 0.2164 11 8 0.5064 -2.2026 -0.6347 12 7 0.9696 -4.2270 0.1459 13 6 0.2501 -4.8663 -0.9585 14 6 1.1994 -5.1072 -2.1038 15 1 2.2352 -4.8139 -2.0176 16 6 0.7459 -5.7031 -3.2616 17 7 1.5742 -5.9129 -4.2612 18 14 -1.0455 -6.2112 -3.4106 19 1 -1.8337 -5.0865 -3.9754 20 1 -1.1527 -7.3901 -4.3072 21 1 -1.5742 -6.5608 -2.0677 22 6 1.6126 -5.0487 1.1743 23 6 1.6740 -6.5587 0.9357 24 6 0.7204 -5.9886 1.9875 25 1 -0.3634 0.8168 0.6236 26 1 -0.3633 0.1317 -1.0192 27 1 -0.3633 -0.9485 0.3956 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.1488 -1.7846 -1.0358 32 1 1.3283 -0.5851 -2.0634 33 1 3.0063 -0.3080 -1.5382 34 1 -0.0537 -1.0846 1.9936 35 1 1.2452 -1.2207 3.2958 36 1 -0.5602 -4.2164 -1.2888 37 1 -0.1616 -5.8177 -0.6216 38 1 1.2551 -6.3318 -5.0759 39 1 2.4553 -4.5853 1.6874 40 1 1.2356 -6.9408 0.0138 41 1 2.5573 -7.0890 1.2917 42 1 0.9764 -6.1438 3.0357 43 1 -0.3450 -5.9956 1.7575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704181043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:56 Heat of formation + Delta-G solvation = 53.798718 kcal Electronic energy + Delta-G solvation = -21735.123046 eV Core-core repulsion = 18783.896827 eV Total energy + Delta-G solvation = -2951.226219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.57209 -38.00395 -36.21568 -33.77749 -33.18695 -31.95937 -28.41627 -26.95845 -26.74653 -24.16929 -22.63707 -22.35244 -21.95643 -21.16585 -18.65775 -17.69263 -16.98582 -16.88091 -15.56179 -15.16648 -14.96922 -14.49307 -14.03048 -13.92792 -13.66533 -13.13956 -12.67745 -12.47969 -12.28594 -12.07606 -11.77426 -11.52957 -11.41494 -11.25267 -11.01255 -10.78045 -10.62331 -10.55661 -10.47942 -10.28549 -10.16095 -10.05551 -9.99286 -9.65767 -9.52725 -9.39262 -8.59488 -8.54162 -7.43298 -6.08272 -4.06381 3.06686 3.27413 3.33298 3.35658 3.71370 4.09495 4.38674 4.39006 4.74688 4.90796 5.09551 5.18636 5.23718 5.24328 5.29146 5.39622 5.41347 5.51524 5.60665 5.80362 5.86226 5.94184 6.02654 6.06912 6.12999 6.15180 6.23703 6.25673 6.36314 6.44407 6.59935 6.63226 6.68219 6.74851 6.85121 6.94823 7.04199 7.23705 7.39187 7.60732 8.29443 8.48157 8.95260 9.02794 9.52161 11.05049 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.007343 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.466564 B = 3812.373785 C = 4700.094804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.027 4.027 3 C -0.136 4.136 4 C -0.128 4.128 5 C -0.109 4.109 6 H 0.105 0.895 7 C -0.159 4.159 8 C -0.185 4.185 9 H 0.115 0.885 10 C 0.527 3.473 11 O -0.507 6.507 12 N -0.562 5.562 13 C 0.215 3.785 14 C -0.521 4.521 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.896 5.896 18 Si 0.872 3.128 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.267 1.267 22 C 0.080 3.920 23 C -0.175 4.175 24 C -0.204 4.204 25 H 0.026 0.974 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 6.829 14.299 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.027 4.027 3 C -0.194 4.194 4 C -0.185 4.185 5 C -0.127 4.127 6 H 0.123 0.877 7 C -0.196 4.196 8 C -0.206 4.206 9 H 0.133 0.867 10 C 0.316 3.684 11 O -0.384 6.384 12 N -0.292 5.292 13 C 0.095 3.905 14 C -0.560 4.560 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.535 5.535 18 Si 0.699 3.301 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.192 1.192 22 C -0.026 4.026 23 C -0.213 4.213 24 C -0.243 4.243 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.302 7.112 13.614 15.362 hybrid contribution -0.691 -0.546 -0.199 0.903 sum -0.994 6.566 13.415 14.969 Atomic orbital electron populations 1.22231 0.94201 1.00955 1.01212 1.19917 0.96012 0.93317 0.93493 1.21920 1.00274 0.96131 1.01028 1.22312 0.97853 1.02398 0.95908 1.22464 0.99453 0.92634 0.98190 0.87743 1.23192 0.98844 1.01646 0.95966 1.22342 1.03954 0.93526 1.00815 0.86720 1.19185 0.81681 0.81758 0.85792 1.90815 1.46130 1.60919 1.40583 1.47368 1.52567 1.04554 1.24663 1.19648 0.93187 0.92747 0.84912 1.21284 0.97496 1.39621 0.97581 0.90664 1.24831 0.97190 0.95398 0.95472 1.69890 1.34939 1.43506 1.05161 0.86924 0.86121 0.78608 0.78478 1.19967 1.21095 1.19189 1.21511 0.97902 0.89416 0.93747 1.23333 1.01366 0.95346 1.01260 1.23395 0.98123 1.06079 0.96696 0.95519 0.93113 0.90166 0.93200 0.92877 0.93307 0.89832 0.92716 0.96125 0.87457 0.88680 0.94591 0.95340 0.92619 0.86371 0.86676 0.88744 0.88910 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 6.55 37.15 0.24 -1.83 16 2 C -0.03 -0.42 0.77 -154.51 -0.12 -0.54 16 3 C -0.14 -1.74 8.15 37.16 0.30 -1.44 16 4 C -0.13 -2.40 7.42 37.16 0.28 -2.12 16 5 C -0.11 -1.49 5.26 -90.62 -0.48 -1.97 16 6 H 0.10 1.24 8.06 -51.93 -0.42 0.82 16 7 C -0.16 -2.00 9.36 -26.74 -0.25 -2.25 16 8 C -0.19 -2.76 5.25 -91.77 -0.48 -3.24 16 9 H 0.11 1.50 6.17 -51.93 -0.32 1.18 16 10 C 0.53 10.24 5.69 -10.99 -0.06 10.18 16 11 O -0.51 -11.06 8.05 5.55 0.04 -11.01 16 12 N -0.56 -11.36 2.79 -167.47 -0.47 -11.83 16 13 C 0.22 5.14 3.53 -5.19 -0.02 5.12 16 14 C -0.52 -14.61 9.74 -34.44 -0.34 -14.95 16 15 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 18 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 22 C 0.08 1.31 6.03 -67.93 -0.41 0.90 16 23 C -0.18 -2.81 9.72 -26.74 -0.26 -3.07 16 24 C -0.20 -2.87 10.13 -26.74 -0.27 -3.14 16 25 H 0.03 0.36 7.93 -51.93 -0.41 -0.05 16 26 H 0.05 0.88 7.53 -51.93 -0.39 0.49 16 27 H 0.08 1.40 3.54 -51.93 -0.18 1.21 16 28 H 0.05 0.60 8.11 -51.93 -0.42 0.17 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.08 1.79 4.21 -52.90 -0.22 1.57 16 32 H 0.05 1.11 7.27 -51.93 -0.38 0.73 16 33 H 0.02 0.35 7.83 -51.93 -0.41 -0.06 16 34 H 0.11 1.44 5.66 -51.93 -0.29 1.15 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 37 H 0.03 0.66 5.38 -51.93 -0.28 0.38 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.12 1.63 6.14 -51.93 -0.32 1.31 16 40 H 0.12 2.21 6.29 -51.93 -0.33 1.88 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.09 1.38 8.12 -51.93 -0.42 0.96 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -30.78 322.25 -8.27 -39.06 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.85 Total: 5.14 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.96 Total: -16.34 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.31 Total: -38.46 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.04 Total: -11.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.78 -8.27 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704181043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.858 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds