Wall clock time and date at job start Mon Mar 30 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47258 * 2 1 4 4 C 1.53001 * 109.47307 * 239.99605 * 2 1 3 5 5 C 1.53005 * 109.47145 * 119.99614 * 2 1 3 6 6 H 1.08995 * 115.56372 * 212.85502 * 5 2 1 7 7 C 1.52998 * 117.49751 * 358.55045 * 5 2 1 8 8 C 1.52992 * 60.00173 * 107.48687 * 7 5 2 9 9 H 1.09000 * 117.49934 * 107.51284 * 8 7 5 10 10 C 1.50706 * 117.50056 * 252.50699 * 8 7 5 11 11 O 1.21288 * 119.99389 * 57.89443 * 10 8 7 12 12 N 1.34767 * 120.00511 * 237.89840 * 10 8 7 13 13 C 1.46499 * 120.00275 * 179.97438 * 12 10 8 14 14 C 1.50699 * 109.46867 * 90.00133 * 13 12 10 15 15 H 1.08003 * 120.00398 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00252 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99711 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47176 * 89.99595 * 18 16 14 20 20 H 1.48496 * 109.47036 * 209.99486 * 18 16 14 21 21 H 1.48500 * 109.47016 * 329.99777 * 18 16 14 22 22 C 1.46503 * 119.99893 * 0.02562 * 12 10 8 23 23 C 1.52998 * 117.49840 * 188.62058 * 22 12 10 24 24 C 1.52994 * 60.00043 * 252.50800 * 23 22 12 25 25 H 1.09002 * 109.47329 * 322.64039 * 1 2 3 26 26 H 1.09000 * 109.47076 * 82.63856 * 1 2 3 27 27 H 1.09004 * 109.47122 * 202.63770 * 1 2 3 28 28 H 1.09005 * 109.47373 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47264 * 299.99707 * 3 2 1 30 30 H 1.09001 * 109.47045 * 59.99823 * 3 2 1 31 31 H 1.08993 * 109.47107 * 270.72638 * 4 2 1 32 32 H 1.08993 * 109.47001 * 30.73206 * 4 2 1 33 33 H 1.09003 * 109.46704 * 150.72976 * 4 2 1 34 34 H 1.09007 * 117.49910 * 359.97438 * 7 5 2 35 35 H 1.09005 * 117.49831 * 214.97847 * 7 5 2 36 36 H 1.08997 * 109.47213 * 330.00304 * 13 12 10 37 37 H 1.09001 * 109.47331 * 209.99855 * 13 12 10 38 38 H 0.97006 * 120.00271 * 180.02562 * 17 16 14 39 39 H 1.09000 * 115.55019 * 334.32375 * 22 12 10 40 40 H 1.09002 * 117.50033 * 359.97438 * 23 22 12 41 41 H 1.09005 * 117.49828 * 145.01264 * 23 22 12 42 42 H 1.09001 * 117.49667 * 252.51441 * 24 23 22 43 43 H 1.08999 * 117.50135 * 107.49065 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 2.9755 -0.3432 1.6616 7 6 0.9963 -1.2505 2.2350 8 6 1.7789 -2.2252 1.3528 9 1 2.5425 -2.8370 1.8333 10 6 1.0392 -2.8829 0.2164 11 8 0.5064 -2.2026 -0.6347 12 7 0.9696 -4.2270 0.1459 13 6 0.2501 -4.8663 -0.9585 14 6 1.1994 -5.1072 -2.1038 15 1 2.2352 -4.8139 -2.0176 16 6 0.7459 -5.7031 -3.2616 17 7 1.5742 -5.9129 -4.2612 18 14 -1.0455 -6.2112 -3.4106 19 1 -1.8337 -5.0865 -3.9754 20 1 -1.1527 -7.3901 -4.3072 21 1 -1.5742 -6.5608 -2.0677 22 6 1.6126 -5.0487 1.1743 23 6 1.6740 -6.5587 0.9357 24 6 0.7204 -5.9886 1.9875 25 1 -0.3634 0.8168 0.6236 26 1 -0.3633 0.1317 -1.0192 27 1 -0.3633 -0.9485 0.3956 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.1488 -1.7846 -1.0358 32 1 1.3283 -0.5851 -2.0634 33 1 3.0063 -0.3080 -1.5382 34 1 -0.0537 -1.0846 1.9936 35 1 1.2452 -1.2207 3.2958 36 1 -0.5602 -4.2164 -1.2888 37 1 -0.1616 -5.8177 -0.6216 38 1 1.2551 -6.3318 -5.0759 39 1 2.4553 -4.5853 1.6874 40 1 1.2356 -6.9408 0.0138 41 1 2.5573 -7.0890 1.2917 42 1 0.9764 -6.1438 3.0357 43 1 -0.3450 -5.9956 1.7575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704181043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:55 Heat of formation + Delta-G solvation = 35.784923 kcal Electronic energy + Delta-G solvation = -21735.904183 eV Core-core repulsion = 18783.896827 eV Total energy + Delta-G solvation = -2952.007356 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91199 -39.34782 -37.57593 -35.15248 -34.96671 -33.72290 -30.33001 -28.30429 -27.98014 -25.80657 -23.88739 -23.72350 -23.16772 -22.62925 -19.96780 -19.21488 -18.94855 -18.24912 -17.11390 -16.53298 -16.42879 -16.12576 -15.58247 -15.21422 -14.91564 -14.66229 -14.38928 -13.84802 -13.80110 -13.62183 -13.24342 -12.95311 -12.84151 -12.57090 -12.48077 -12.43856 -12.16195 -11.93615 -11.82542 -11.81253 -11.59686 -11.47056 -11.34743 -11.27949 -10.85663 -10.83999 -10.71201 -10.03790 -9.00803 -8.34202 -6.37237 1.27516 1.31004 1.38877 1.70907 2.26476 2.28153 2.94676 2.99633 3.16602 3.58928 3.77143 3.95398 3.98377 4.07022 4.08470 4.22470 4.24572 4.39378 4.47071 4.71413 4.75445 4.83961 4.86221 4.87777 4.88805 4.94777 4.98741 5.01365 5.04904 5.15508 5.21237 5.26303 5.32311 5.35109 5.37890 5.45552 5.54331 5.65890 5.70447 5.84123 6.26150 6.63838 6.81749 7.23115 7.54484 8.82817 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.018508 B = 0.007343 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.466564 B = 3812.373785 C = 4700.094804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.029 4.029 3 C -0.130 4.130 4 C -0.121 4.121 5 C -0.110 4.110 6 H 0.134 0.866 7 C -0.132 4.132 8 C -0.197 4.197 9 H 0.139 0.861 10 C 0.514 3.486 11 O -0.543 6.543 12 N -0.576 5.576 13 C 0.230 3.770 14 C -0.518 4.518 15 H 0.027 0.973 16 C 0.013 3.987 17 N -0.945 5.945 18 Si 0.940 3.060 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.243 1.243 22 C 0.060 3.940 23 C -0.192 4.192 24 C -0.171 4.171 25 H 0.052 0.948 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.021 0.979 33 H 0.027 0.973 34 H 0.096 0.904 35 H 0.135 0.865 36 H 0.016 0.984 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.149 0.851 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.134 0.866 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.319 7.456 18.125 19.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.188 4.188 4 C -0.178 4.178 5 C -0.129 4.129 6 H 0.152 0.848 7 C -0.169 4.169 8 C -0.218 4.218 9 H 0.156 0.844 10 C 0.305 3.695 11 O -0.423 6.423 12 N -0.305 5.305 13 C 0.108 3.892 14 C -0.557 4.557 15 H 0.046 0.954 16 C -0.185 4.185 17 N -0.585 5.585 18 Si 0.763 3.237 19 H -0.203 1.203 20 H -0.200 1.200 21 H -0.166 1.166 22 C -0.044 4.044 23 C -0.230 4.230 24 C -0.209 4.209 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.114 0.886 35 H 0.153 0.847 36 H 0.034 0.966 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.166 0.834 40 H 0.094 0.906 41 H 0.137 0.863 42 H 0.152 0.848 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.600 7.733 17.486 19.129 hybrid contribution -0.521 -0.716 -1.442 1.692 sum -1.120 7.016 16.044 17.547 Atomic orbital electron populations 1.22140 0.94994 1.01051 0.99795 1.19908 0.95409 0.94898 0.92703 1.21862 1.00940 0.94092 1.01873 1.22203 0.97444 1.01079 0.97063 1.22573 1.01267 0.91267 0.97770 0.84806 1.23303 0.97810 0.98277 0.97474 1.22308 1.05056 0.94250 1.00178 0.84372 1.20112 0.81298 0.81351 0.86693 1.90807 1.47655 1.61643 1.42223 1.47427 1.52926 1.05543 1.24604 1.19177 0.91975 0.92939 0.85107 1.21441 0.96111 1.38764 0.99399 0.95417 1.25751 1.02165 0.95525 0.95019 1.70043 1.37412 1.45058 1.06010 0.85832 0.79926 0.78216 0.79696 1.20309 1.20002 1.16647 1.21958 0.99660 0.89142 0.93667 1.23315 1.03246 0.95540 1.00894 1.23439 0.96856 1.02568 0.98081 0.92942 0.95982 0.91669 0.92111 0.93568 0.90952 0.92852 0.96025 0.95397 0.88597 0.84670 0.96606 0.94226 0.92432 0.83410 0.90628 0.86275 0.84756 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 6.55 71.98 0.47 -3.45 16 2 C -0.03 -0.86 0.77 -52.18 -0.04 -0.90 16 3 C -0.13 -3.02 8.15 71.98 0.59 -2.44 16 4 C -0.12 -4.73 7.42 71.98 0.53 -4.19 16 5 C -0.11 -2.68 5.26 -10.79 -0.06 -2.73 16 6 H 0.13 2.52 8.06 -2.39 -0.02 2.50 16 7 C -0.13 -2.76 9.36 30.59 0.29 -2.47 16 8 C -0.20 -5.39 5.25 -11.54 -0.06 -5.45 16 9 H 0.14 3.08 6.17 -2.39 -0.01 3.06 16 10 C 0.51 20.17 5.69 87.66 0.50 20.67 16 11 O -0.54 -24.83 8.05 -3.05 -0.02 -24.86 16 12 N -0.58 -23.51 2.79 -802.15 -2.24 -25.75 16 13 C 0.23 11.34 3.53 85.63 0.30 11.64 16 14 C -0.52 -30.66 9.74 25.60 0.25 -30.41 16 15 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 16 C 0.01 0.79 5.47 84.66 0.46 1.25 16 17 N -0.94 -60.47 13.96 21.45 0.30 -60.17 16 18 Si 0.94 45.44 27.47 68.60 1.88 47.33 16 19 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.24 -10.70 6.54 99.48 0.65 -10.04 16 22 C 0.06 1.85 6.03 44.99 0.27 2.12 16 23 C -0.19 -5.96 9.72 30.59 0.30 -5.66 16 24 C -0.17 -4.29 10.13 30.59 0.31 -3.98 16 25 H 0.05 1.35 7.93 -2.39 -0.02 1.33 16 26 H 0.02 0.78 7.53 -2.39 -0.02 0.77 16 27 H 0.06 2.28 3.54 -2.38 -0.01 2.27 16 28 H 0.06 1.28 8.11 -2.38 -0.02 1.26 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 31 H 0.05 2.40 4.21 -17.72 -0.07 2.33 16 32 H 0.02 0.93 7.27 -2.39 -0.02 0.91 16 33 H 0.03 0.99 7.83 -2.39 -0.02 0.97 16 34 H 0.10 2.29 5.66 -2.38 -0.01 2.28 16 35 H 0.14 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.02 0.84 6.85 -2.39 -0.02 0.83 16 37 H 0.04 1.86 5.38 -2.39 -0.01 1.85 16 38 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 39 H 0.15 3.60 6.14 -2.39 -0.01 3.59 16 40 H 0.08 2.96 6.29 -2.39 -0.02 2.95 16 41 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 42 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 Total: -1.00 -73.62 322.25 4.90 -68.72 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.87 Total: 20.73 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.11 Total: -25.99 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -1.94 Total: -85.92 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.02 Total: -24.86 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Total: -73.62 4.90 -68.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704181043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.502 kcal (2) G-P(sol) polarization free energy of solvation -73.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds