Wall clock time and date at job start Mon Mar 30 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47106 * 2 1 4 4 C 1.52999 * 109.46795 * 240.00277 * 2 1 3 5 5 C 1.52999 * 109.47001 * 120.00131 * 2 1 3 6 6 H 1.09004 * 115.54627 * 205.66409 * 5 2 1 7 7 C 1.52994 * 117.51983 * 351.36865 * 5 2 1 8 8 C 1.52996 * 117.49817 * 60.00134 * 5 2 1 9 9 H 1.08999 * 117.50124 * 359.97438 * 8 5 2 10 10 C 1.50698 * 117.49741 * 144.99472 * 8 5 2 11 11 O 1.21276 * 120.00423 * 0.02562 * 10 8 5 12 12 N 1.34782 * 120.00035 * 179.97438 * 10 8 5 13 13 C 1.46495 * 120.00029 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47574 * 269.99868 * 13 12 10 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48502 * 109.46964 * 270.27509 * 18 16 14 20 20 H 1.48505 * 109.47036 * 30.26897 * 18 16 14 21 21 H 1.48490 * 109.47395 * 150.27411 * 18 16 14 22 22 C 1.46504 * 119.99774 * 0.02562 * 12 10 8 23 23 C 1.52996 * 117.49757 * 188.74511 * 22 12 10 24 24 C 1.53000 * 117.49906 * 120.08743 * 22 12 10 25 25 H 1.09008 * 109.46940 * 300.00060 * 1 2 3 26 26 H 1.09008 * 109.47177 * 59.99381 * 1 2 3 27 27 H 1.09000 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47107 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47071 * 300.00159 * 3 2 1 30 30 H 1.08999 * 109.46749 * 60.00322 * 3 2 1 31 31 H 1.09004 * 109.47333 * 299.99645 * 4 2 1 32 32 H 1.09005 * 109.47454 * 60.00369 * 4 2 1 33 33 H 1.09007 * 109.47043 * 180.02562 * 4 2 1 34 34 H 1.08998 * 117.49847 * 359.97438 * 7 5 2 35 35 H 1.09000 * 117.50104 * 214.96802 * 7 5 2 36 36 H 1.09009 * 109.47230 * 150.00208 * 13 12 10 37 37 H 1.08998 * 109.47557 * 30.00700 * 13 12 10 38 38 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 39 39 H 1.08994 * 115.55181 * 334.41714 * 22 12 10 40 40 H 1.09002 * 117.49984 * 359.97438 * 23 22 12 41 41 H 1.09004 * 117.49950 * 145.01782 * 23 22 12 42 42 H 1.08991 * 117.49981 * 214.98071 * 24 22 12 43 43 H 1.09004 * 117.49511 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.0324 -0.4263 1.5901 7 6 1.0108 -1.1018 2.3154 8 6 1.6357 -2.1852 1.4342 9 1 1.0061 -2.6344 0.6661 10 6 2.6400 -3.1089 2.0739 11 8 3.7211 -2.6827 2.4206 12 7 2.3363 -4.4086 2.2616 13 6 3.3128 -5.3066 2.8829 14 6 4.1786 -5.9237 1.8149 15 1 4.0177 -5.6718 0.7770 16 6 5.1759 -6.8099 2.1626 17 7 5.3721 -7.1163 3.4265 18 14 6.2441 -7.5806 0.8381 19 1 5.6188 -8.8438 0.3707 20 1 6.3726 -6.6399 -0.3038 21 1 7.5900 -7.8708 1.3943 22 6 1.0301 -4.9234 1.8432 23 6 0.6644 -6.3481 2.2643 24 6 1.0131 -6.0468 0.8047 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7216 -1.2491 34 1 -0.0299 -0.8379 2.1273 35 1 1.3261 -1.0571 3.3579 36 1 2.7889 -6.0936 3.4255 37 1 3.9370 -4.7417 3.5752 38 1 4.8176 -6.7158 4.1143 39 1 0.2261 -4.1885 1.8029 40 1 1.3959 -6.9025 2.8523 41 1 -0.3802 -6.5506 2.5007 42 1 0.1978 -6.0511 0.0813 43 1 1.9738 -6.4025 0.4324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704181045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:00 Heat of formation + Delta-G solvation = 0.208568 kcal Electronic energy + Delta-G solvation = -21022.355950 eV Core-core repulsion = 18068.805888 eV Total energy + Delta-G solvation = -2953.550062 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95287 -38.25910 -36.64210 -33.81328 -33.31906 -31.95519 -27.60720 -27.35383 -27.18950 -24.10936 -22.84772 -22.55310 -21.91588 -21.30127 -18.55599 -18.12409 -17.10916 -16.86991 -15.53838 -15.41425 -14.49048 -14.13440 -14.07195 -13.86354 -13.71577 -13.56022 -12.88289 -12.67746 -12.47463 -12.32769 -11.89160 -11.72115 -11.55858 -11.49349 -11.18047 -11.01686 -10.89762 -10.74284 -10.65028 -10.54958 -10.45820 -10.13615 -10.11001 -10.06455 -9.77293 -9.02605 -8.89930 -8.36601 -7.48644 -6.36936 -4.08789 3.10156 3.42092 3.48197 3.62829 3.73020 4.03951 4.38926 4.53432 4.58097 4.75715 4.89917 5.04565 5.10630 5.18690 5.27907 5.33277 5.36600 5.43490 5.49356 5.53370 5.59523 5.62238 5.69117 5.75509 5.86892 5.89132 6.00915 6.02343 6.06492 6.13906 6.15660 6.24963 6.36109 6.47487 6.50577 6.74214 6.90009 7.14142 7.42940 8.04592 8.33579 8.45276 8.78827 9.05179 9.60273 10.99680 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.005450 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.195096 B = 5136.224830 C = 5554.144000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 C -0.137 4.137 4 C -0.140 4.140 5 C -0.111 4.111 6 H 0.115 0.885 7 C -0.158 4.158 8 C -0.178 4.178 9 H 0.118 0.882 10 C 0.539 3.461 11 O -0.541 6.541 12 N -0.563 5.563 13 C 0.232 3.768 14 C -0.600 4.600 15 H 0.052 0.948 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 1.072 2.928 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.073 3.927 23 C -0.184 4.184 24 C -0.192 4.192 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.027 0.973 37 H 0.032 0.968 38 H 0.267 0.733 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.366 11.339 -6.600 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.195 4.195 4 C -0.198 4.198 5 C -0.129 4.129 6 H 0.133 0.867 7 C -0.196 4.196 8 C -0.199 4.199 9 H 0.135 0.865 10 C 0.326 3.674 11 O -0.419 6.419 12 N -0.292 5.292 13 C 0.112 3.888 14 C -0.639 4.639 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.547 5.547 18 Si 0.900 3.100 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.209 1.209 22 C -0.033 4.033 23 C -0.222 4.222 24 C -0.231 4.231 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.499 10.502 -6.635 16.927 hybrid contribution -1.349 0.805 0.179 1.581 sum -12.848 11.306 -6.456 18.292 Atomic orbital electron populations 1.22018 0.94846 1.01763 1.01566 1.20079 0.95060 0.95063 0.93694 1.21827 1.01280 0.94933 1.01425 1.21852 1.01619 1.00250 0.96040 1.22395 0.99980 0.94070 0.96482 0.86697 1.23153 0.98779 1.00917 0.96706 1.22337 1.02703 0.91099 1.03796 0.86459 1.19369 0.86941 0.82052 0.79021 1.90655 1.24055 1.75651 1.51517 1.47422 1.14399 1.08519 1.58905 1.19413 0.86824 0.88241 0.94299 1.22242 1.18824 1.28794 0.94006 0.92972 1.25770 0.96888 0.95382 1.00383 1.70777 1.40468 1.43288 1.00119 0.83503 0.76410 0.75734 0.74363 1.21426 1.21532 1.20890 1.21526 0.87319 0.90781 1.03698 1.23278 1.01702 0.98174 0.99043 1.23463 1.03899 1.03733 0.91970 0.92246 0.92751 0.92536 0.92435 0.92756 0.92595 0.92477 0.92889 0.92328 0.87723 0.88731 0.95513 0.94978 0.92256 0.86523 0.87363 0.89025 0.89442 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.07 37.16 0.26 -1.07 16 2 C -0.04 -0.43 0.88 -154.51 -0.14 -0.57 16 3 C -0.14 -1.36 8.46 37.16 0.31 -1.04 16 4 C -0.14 -1.63 8.31 37.16 0.31 -1.32 16 5 C -0.11 -1.55 4.66 -90.63 -0.42 -1.97 16 6 H 0.12 1.89 7.64 -51.93 -0.40 1.49 16 7 C -0.16 -2.05 9.27 -26.73 -0.25 -2.30 16 8 C -0.18 -2.80 3.79 -91.77 -0.35 -3.15 16 9 H 0.12 1.66 6.14 -51.93 -0.32 1.34 16 10 C 0.54 11.71 7.46 -10.98 -0.08 11.62 16 11 O -0.54 -14.11 15.84 5.56 0.09 -14.02 16 12 N -0.56 -12.37 2.80 -167.47 -0.47 -12.84 16 13 C 0.23 6.09 4.09 -5.20 -0.02 6.06 16 14 C -0.60 -17.11 8.38 -34.44 -0.29 -17.40 16 15 H 0.05 1.52 7.32 -52.49 -0.38 1.13 16 16 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 17 N -0.91 -27.84 13.65 55.43 0.76 -27.08 16 18 Si 1.07 25.88 29.90 -169.99 -5.08 20.79 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.07 1.26 5.80 -67.93 -0.39 0.86 16 23 C -0.18 -3.05 9.80 -26.70 -0.26 -3.31 16 24 C -0.19 -3.22 10.19 -26.70 -0.27 -3.49 16 25 H 0.06 0.51 6.98 -51.92 -0.36 0.15 16 26 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.06 0.52 7.08 -51.93 -0.37 0.16 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.70 7.29 -51.93 -0.38 0.32 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 1.07 5.85 -51.93 -0.30 0.77 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.03 0.70 5.67 -51.92 -0.29 0.41 16 37 H 0.03 0.95 7.28 -51.93 -0.38 0.57 16 38 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 39 H 0.12 1.64 6.85 -51.93 -0.36 1.29 16 40 H 0.11 2.12 6.02 -51.93 -0.31 1.80 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.11 2.28 6.72 -51.93 -0.35 1.93 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -32.85 338.44 -8.39 -41.24 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.10 Total: 3.40 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.68 Total: -16.59 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.29 Total: -39.92 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.85 -8.39 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704181045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.447 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds