Wall clock time and date at job start Mon Mar 30 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47106 * 2 1 4 4 C 1.52999 * 109.46795 * 240.00277 * 2 1 3 5 5 C 1.52999 * 109.47001 * 120.00131 * 2 1 3 6 6 H 1.09004 * 115.54627 * 205.66409 * 5 2 1 7 7 C 1.52994 * 117.51983 * 351.36865 * 5 2 1 8 8 C 1.52996 * 117.49817 * 60.00134 * 5 2 1 9 9 H 1.08999 * 117.50124 * 359.97438 * 8 5 2 10 10 C 1.50698 * 117.49741 * 144.99472 * 8 5 2 11 11 O 1.21276 * 120.00423 * 0.02562 * 10 8 5 12 12 N 1.34782 * 120.00035 * 179.97438 * 10 8 5 13 13 C 1.46495 * 120.00029 * 179.97438 * 12 10 8 14 14 C 1.50702 * 109.47574 * 269.99868 * 13 12 10 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 13 19 19 H 1.48502 * 109.46964 * 270.27509 * 18 16 14 20 20 H 1.48505 * 109.47036 * 30.26897 * 18 16 14 21 21 H 1.48490 * 109.47395 * 150.27411 * 18 16 14 22 22 C 1.46504 * 119.99774 * 0.02562 * 12 10 8 23 23 C 1.52996 * 117.49757 * 188.74511 * 22 12 10 24 24 C 1.53000 * 117.49906 * 120.08743 * 22 12 10 25 25 H 1.09008 * 109.46940 * 300.00060 * 1 2 3 26 26 H 1.09008 * 109.47177 * 59.99381 * 1 2 3 27 27 H 1.09000 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47107 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47071 * 300.00159 * 3 2 1 30 30 H 1.08999 * 109.46749 * 60.00322 * 3 2 1 31 31 H 1.09004 * 109.47333 * 299.99645 * 4 2 1 32 32 H 1.09005 * 109.47454 * 60.00369 * 4 2 1 33 33 H 1.09007 * 109.47043 * 180.02562 * 4 2 1 34 34 H 1.08998 * 117.49847 * 359.97438 * 7 5 2 35 35 H 1.09000 * 117.50104 * 214.96802 * 7 5 2 36 36 H 1.09009 * 109.47230 * 150.00208 * 13 12 10 37 37 H 1.08998 * 109.47557 * 30.00700 * 13 12 10 38 38 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 39 39 H 1.08994 * 115.55181 * 334.41714 * 22 12 10 40 40 H 1.09002 * 117.49984 * 359.97438 * 23 22 12 41 41 H 1.09004 * 117.49950 * 145.01782 * 23 22 12 42 42 H 1.08991 * 117.49981 * 214.98071 * 24 22 12 43 43 H 1.09004 * 117.49511 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.0324 -0.4263 1.5901 7 6 1.0108 -1.1018 2.3154 8 6 1.6357 -2.1852 1.4342 9 1 1.0061 -2.6344 0.6661 10 6 2.6400 -3.1089 2.0739 11 8 3.7211 -2.6827 2.4206 12 7 2.3363 -4.4086 2.2616 13 6 3.3128 -5.3066 2.8829 14 6 4.1786 -5.9237 1.8149 15 1 4.0177 -5.6718 0.7770 16 6 5.1759 -6.8099 2.1626 17 7 5.3721 -7.1163 3.4265 18 14 6.2441 -7.5806 0.8381 19 1 5.6188 -8.8438 0.3707 20 1 6.3726 -6.6399 -0.3038 21 1 7.5900 -7.8708 1.3943 22 6 1.0301 -4.9234 1.8432 23 6 0.6644 -6.3481 2.2643 24 6 1.0131 -6.0468 0.8047 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5140 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1393 33 1 3.1300 -0.7216 -1.2491 34 1 -0.0299 -0.8379 2.1273 35 1 1.3261 -1.0571 3.3579 36 1 2.7889 -6.0936 3.4255 37 1 3.9370 -4.7417 3.5752 38 1 4.8176 -6.7158 4.1143 39 1 0.2261 -4.1885 1.8029 40 1 1.3959 -6.9025 2.8523 41 1 -0.3802 -6.5506 2.5007 42 1 0.1978 -6.0511 0.0813 43 1 1.9738 -6.4025 0.4324 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704181045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:59 Heat of formation + Delta-G solvation = -19.191290 kcal Electronic energy + Delta-G solvation = -21023.197191 eV Core-core repulsion = 18068.805888 eV Total energy + Delta-G solvation = -2954.391303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39971 -39.55280 -38.20674 -35.58110 -34.73368 -33.79377 -29.44117 -28.20469 -28.10896 -25.97155 -24.32774 -23.81914 -23.29455 -22.83107 -19.98414 -19.30520 -19.00707 -18.51834 -17.12432 -16.63090 -16.06056 -15.78831 -15.53491 -15.23491 -14.94212 -14.69083 -14.63034 -14.20009 -13.56832 -13.53251 -13.43809 -13.15200 -12.70028 -12.62285 -12.55317 -12.45933 -12.25938 -12.14080 -12.06489 -12.02837 -11.94534 -11.49014 -11.46014 -11.20152 -11.03504 -10.85367 -10.65575 -10.62453 -9.33426 -8.70467 -6.46462 1.43608 1.52819 1.54679 1.71814 2.11644 2.48973 2.81692 3.02282 3.07008 3.43584 3.74272 3.79622 3.87604 3.96563 4.02090 4.13468 4.16777 4.27330 4.32384 4.58290 4.60262 4.69981 4.79911 4.82527 4.85626 4.88190 4.91482 4.95513 5.00704 5.09143 5.12751 5.15097 5.19655 5.23843 5.38591 5.39238 5.50753 5.52335 5.57663 5.78535 6.11499 6.41681 6.66106 7.25132 7.37966 8.62505 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.021333 B = 0.005450 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.195096 B = 5136.224830 C = 5554.144000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 C -0.137 4.137 4 C -0.141 4.141 5 C -0.112 4.112 6 H 0.079 0.921 7 C -0.131 4.131 8 C -0.184 4.184 9 H 0.145 0.855 10 C 0.525 3.475 11 O -0.602 6.602 12 N -0.572 5.572 13 C 0.244 3.756 14 C -0.603 4.603 15 H 0.042 0.958 16 C -0.031 4.031 17 N -0.931 5.931 18 Si 1.118 2.882 19 H -0.261 1.261 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.060 3.940 23 C -0.180 4.180 24 C -0.186 4.186 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.027 0.973 37 H -0.015 1.015 38 H 0.254 0.746 39 H 0.163 0.837 40 H 0.067 0.933 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 12.118 -8.727 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.199 4.199 5 C -0.131 4.131 6 H 0.097 0.903 7 C -0.168 4.168 8 C -0.205 4.205 9 H 0.162 0.838 10 C 0.316 3.684 11 O -0.485 6.485 12 N -0.300 5.300 13 C 0.123 3.877 14 C -0.642 4.642 15 H 0.060 0.940 16 C -0.229 4.229 17 N -0.569 5.569 18 Si 0.939 3.061 19 H -0.186 1.186 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.043 4.043 23 C -0.217 4.217 24 C -0.224 4.224 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.165 0.835 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.003 0.997 38 H 0.063 0.937 39 H 0.180 0.820 40 H 0.086 0.914 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.977 11.275 -8.770 20.696 hybrid contribution -0.268 0.592 0.881 1.095 sum -15.245 11.866 -7.889 20.867 Atomic orbital electron populations 1.22014 0.92389 1.02565 1.03021 1.20103 0.96913 0.94951 0.91449 1.21831 1.00367 0.94496 1.02736 1.21874 1.00153 1.00356 0.97490 1.22454 0.99143 0.92889 0.98625 0.90291 1.23309 1.00497 0.97503 0.95450 1.22217 1.02354 0.90656 1.05280 0.83768 1.20512 0.87419 0.82408 0.78094 1.90613 1.27018 1.76740 1.54084 1.47483 1.15517 1.08400 1.58572 1.18921 0.87362 0.88130 0.93318 1.22435 1.19264 1.28630 0.93857 0.93973 1.27298 0.98191 0.95865 1.01569 1.70899 1.40950 1.44293 1.00711 0.82927 0.74945 0.76172 0.72060 1.18626 1.20627 1.20658 1.22071 0.85861 0.92160 1.04255 1.23299 1.03085 0.96944 0.98413 1.23443 1.03426 1.02753 0.92825 0.91076 0.91123 0.92006 0.94050 0.90797 0.91890 0.93118 0.90602 0.94733 0.83465 0.90174 0.95567 0.99670 0.93696 0.81960 0.91399 0.84513 0.84820 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 7.07 71.98 0.51 -1.43 16 2 C -0.03 -0.67 0.88 -52.18 -0.05 -0.72 16 3 C -0.14 -2.43 8.46 71.98 0.61 -1.82 16 4 C -0.14 -3.04 8.31 71.98 0.60 -2.44 16 5 C -0.11 -3.06 4.66 -10.80 -0.05 -3.11 16 6 H 0.08 2.74 7.64 -2.39 -0.02 2.72 16 7 C -0.13 -3.06 9.27 30.59 0.28 -2.77 16 8 C -0.18 -5.55 3.79 -11.54 -0.04 -5.59 16 9 H 0.14 3.56 6.14 -2.39 -0.01 3.55 16 10 C 0.53 23.56 7.46 87.66 0.65 24.22 16 11 O -0.60 -33.64 15.84 -3.02 -0.05 -33.69 16 12 N -0.57 -25.77 2.80 -802.15 -2.24 -28.01 16 13 C 0.24 13.63 4.09 85.63 0.35 13.98 16 14 C -0.60 -36.01 8.38 25.60 0.21 -35.79 16 15 H 0.04 2.55 7.32 -2.91 -0.02 2.52 16 16 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 17 N -0.93 -59.28 13.65 21.45 0.29 -58.99 16 18 Si 1.12 52.86 29.90 68.60 2.05 54.91 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 C 0.06 1.97 5.80 44.99 0.26 2.23 16 23 C -0.18 -5.64 9.80 30.62 0.30 -5.34 16 24 C -0.19 -5.84 10.19 30.62 0.31 -5.53 16 25 H 0.07 0.83 6.98 -2.38 -0.02 0.81 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 0.80 7.08 -2.39 -0.02 0.78 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 1.14 7.29 -2.39 -0.02 1.12 16 32 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.15 2.24 5.85 -2.39 -0.01 2.22 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.03 1.47 5.67 -2.38 -0.01 1.45 16 37 H -0.01 -0.95 7.28 -2.39 -0.02 -0.96 16 38 H 0.25 16.41 7.22 -92.70 -0.67 15.74 16 39 H 0.16 3.82 6.85 -2.39 -0.02 3.80 16 40 H 0.07 2.71 6.02 -2.39 -0.01 2.70 16 41 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.07 2.86 6.72 -2.39 -0.02 2.85 16 Total: -1.00 -78.75 338.44 5.55 -73.21 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 1.08 Total: 18.09 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 4.41 Total: -25.52 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.95 Total: -87.00 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -0.05 Total: -33.69 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 2.05 Total: 54.91 kcal Total: -78.75 5.55 -73.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704181045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.016 kcal (2) G-P(sol) polarization free energy of solvation -78.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds