Wall clock time and date at job start Mon Mar 30 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47225 * 2 1 4 4 C 1.32987 * 120.00562 * 125.25789 * 3 2 1 5 5 C 1.50702 * 120.00259 * 175.67338 * 4 3 2 6 6 C 1.47105 * 119.99661 * 355.68301 * 4 3 2 7 7 O 1.21613 * 119.99271 * 263.30360 * 6 4 3 8 8 N 1.34772 * 120.00411 * 83.30284 * 6 4 3 9 9 C 1.46927 * 120.62912 * 174.83956 * 8 6 4 10 10 C 1.53198 * 108.89130 * 126.34361 * 9 8 6 11 11 C 1.53349 * 109.14673 * 54.57888 * 10 9 8 12 12 C 1.53004 * 109.41555 * 178.67642 * 11 10 9 13 13 C 1.50695 * 109.47069 * 295.12427 * 12 11 10 14 14 H 1.07996 * 120.00318 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00067 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00137 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00059 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46645 * 90.00289 * 17 15 13 19 19 H 1.48496 * 109.47412 * 210.00243 * 17 15 13 20 20 H 1.48496 * 109.46885 * 330.00511 * 17 15 13 21 21 C 1.53040 * 109.60922 * 298.71055 * 11 10 9 22 22 C 1.46929 * 120.62992 * 354.86699 * 8 6 4 23 23 H 1.08995 * 109.47361 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47468 * 300.00730 * 1 2 3 25 25 H 1.09007 * 109.46654 * 60.00316 * 1 2 3 26 26 H 1.08994 * 109.47468 * 239.99269 * 2 1 3 27 27 H 1.08999 * 109.46683 * 119.99295 * 2 1 3 28 28 H 1.08004 * 119.99418 * 305.25842 * 3 2 1 29 29 H 1.09003 * 109.46796 * 275.04606 * 5 4 3 30 30 H 1.08995 * 109.46665 * 35.04243 * 5 4 3 31 31 H 1.09002 * 109.47079 * 155.04766 * 5 4 3 32 32 H 1.08996 * 109.58712 * 246.20067 * 9 8 6 33 33 H 1.08993 * 109.58893 * 6.48755 * 9 8 6 34 34 H 1.09000 * 109.49898 * 174.65637 * 10 9 8 35 35 H 1.08996 * 109.49696 * 294.75755 * 10 9 8 36 36 H 1.08999 * 109.42434 * 58.75374 * 11 10 9 37 37 H 1.08995 * 109.47138 * 55.12932 * 12 11 10 38 38 H 1.09008 * 109.46834 * 175.12531 * 12 11 10 39 39 H 0.96998 * 119.99943 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.49675 * 301.42608 * 21 11 10 41 41 H 1.08996 * 109.52885 * 181.34274 * 21 11 10 42 42 H 1.08997 * 109.58705 * 353.37438 * 22 8 6 43 43 H 1.08998 * 109.58673 * 113.65785 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8808 1.8262 0.9404 5 6 3.4589 3.2169 0.8850 6 6 3.2552 0.9171 2.0346 7 8 2.6807 0.9842 3.1043 8 7 4.2349 0.0098 1.8516 9 6 4.6974 -0.8277 2.9666 10 6 4.6209 -2.2991 2.5468 11 6 5.4065 -2.4919 1.2440 12 6 5.3617 -3.9660 0.8365 13 6 6.0838 -4.7943 1.8677 14 1 6.5297 -4.3173 2.7279 15 6 6.1753 -6.1613 1.7130 16 7 6.8051 -6.8843 2.6133 17 14 5.4035 -6.9867 0.2256 18 1 6.3953 -7.0451 -0.8782 19 1 4.9829 -8.3644 0.5865 20 1 4.2189 -6.2067 -0.2142 21 6 4.7834 -1.6379 0.1374 22 6 4.8612 -0.1601 0.5333 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.7033 2.1099 -0.7638 29 1 4.3363 3.2201 0.2382 30 1 2.7125 3.9050 0.4883 31 1 3.7461 3.5312 1.8884 32 1 5.7276 -0.5713 3.2135 33 1 4.0613 -0.6624 3.8361 34 1 5.0500 -2.9238 3.3302 35 1 3.5793 -2.5783 2.3878 36 1 6.4422 -2.1887 1.3970 37 1 4.3242 -4.2930 0.7693 38 1 5.8452 -4.0899 -0.1326 39 1 6.8691 -7.8460 2.5046 40 1 3.7404 -1.9236 0.0010 41 1 5.3281 -1.7942 -0.7937 42 1 4.3316 0.4440 -0.2034 43 1 5.9041 0.1532 0.5811 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706371802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:32 Heat of formation + Delta-G solvation = -47.981222 kcal Electronic energy + Delta-G solvation = -20977.435730 eV Core-core repulsion = 18021.796002 eV Total energy + Delta-G solvation = -2955.639729 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.29970 -37.47406 -35.89395 -33.98752 -32.43566 -32.01603 -30.74962 -28.62244 -27.15326 -24.99135 -23.49469 -22.52869 -22.14342 -20.75892 -19.37050 -18.13803 -16.73880 -16.50332 -15.83756 -15.52817 -14.55445 -14.35949 -14.10383 -13.92068 -13.63029 -13.38375 -13.21966 -13.03805 -12.92503 -12.72218 -12.48092 -12.28992 -12.14773 -11.99931 -11.48105 -11.19780 -11.15627 -11.07924 -10.87653 -10.66047 -10.37380 -9.81994 -9.77178 -9.67572 -9.49945 -9.11119 -8.99264 -8.54073 -8.40194 -6.04729 -4.02190 1.67367 2.68147 3.19351 3.29061 3.37259 3.40202 4.44352 4.44601 4.64733 4.94352 5.04640 5.17979 5.20411 5.27155 5.28322 5.32569 5.36521 5.39600 5.51637 5.55236 5.64932 5.67292 5.77416 5.82379 5.89677 5.97129 6.02991 6.04665 6.19458 6.28436 6.32504 6.42956 6.46366 6.57928 6.82483 6.86746 7.00911 7.22533 7.42320 7.54786 7.79203 8.25177 8.53284 9.00175 9.58231 11.08597 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.004918 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.690198 B = 5691.986737 C = 6149.333630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.115 4.115 4 C -0.163 4.163 5 C -0.103 4.103 6 C 0.558 3.442 7 O -0.546 6.546 8 N -0.601 5.601 9 C 0.107 3.893 10 C -0.118 4.118 11 C -0.072 4.072 12 C -0.009 4.009 13 C -0.516 4.516 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C -0.133 4.133 22 C 0.108 3.892 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.014 0.986 38 H 0.011 0.989 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 17.637 -7.853 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.134 4.134 4 C -0.166 4.166 5 C -0.160 4.160 6 C 0.346 3.654 7 O -0.424 6.424 8 N -0.333 5.333 9 C -0.015 4.015 10 C -0.156 4.156 11 C -0.091 4.091 12 C -0.046 4.046 13 C -0.554 4.554 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.171 4.171 22 C -0.015 4.015 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.033 0.967 38 H 0.029 0.971 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.846 17.477 -7.221 20.473 hybrid contribution -0.256 -0.672 -0.841 1.106 sum -8.102 16.805 -8.062 20.323 Atomic orbital electron populations 1.21672 0.94705 1.02022 1.01825 1.20839 0.96728 0.93764 1.03235 1.23336 0.95975 0.97518 0.96580 1.21524 1.01609 0.97337 0.96103 1.20649 1.00793 0.91662 1.02869 1.18494 0.79072 0.80089 0.87746 1.90789 1.52923 1.71343 1.27338 1.48236 1.36560 1.36988 1.11547 1.21799 0.99496 0.91055 0.89145 1.21943 1.00741 0.93461 0.99423 1.21061 0.98254 0.96841 0.92909 1.19611 0.96802 0.91464 0.96713 1.21134 1.34554 0.91606 1.08082 0.90850 1.25027 0.94868 0.97522 0.96075 1.69914 1.43087 1.06229 1.35084 0.86814 0.80316 0.78761 0.83573 1.20394 1.21488 1.19113 1.22077 1.01775 0.93497 0.99755 1.21795 0.97970 0.98028 0.83698 0.92297 0.92555 0.92647 0.90201 0.90983 0.85892 0.90930 0.91132 0.91599 0.91633 0.89589 0.89241 0.92484 0.91747 0.96727 0.97097 0.92802 0.91952 0.91080 0.90220 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.89 37.16 0.37 -1.08 16 2 C -0.11 -1.21 6.00 -27.88 -0.17 -1.37 16 3 C -0.12 -1.17 8.41 -36.13 -0.30 -1.47 16 4 C -0.16 -1.90 4.15 -102.85 -0.43 -2.33 16 5 C -0.10 -0.92 10.02 36.01 0.36 -0.56 16 6 C 0.56 8.50 5.14 -12.67 -0.07 8.44 16 7 O -0.55 -10.37 16.52 5.27 0.09 -10.28 16 8 N -0.60 -8.74 2.85 -174.16 -0.50 -9.23 16 9 C 0.11 1.69 6.43 -3.71 -0.02 1.66 16 10 C -0.12 -2.12 5.21 -26.45 -0.14 -2.25 16 11 C -0.07 -1.32 2.10 -90.42 -0.19 -1.51 16 12 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 13 C -0.52 -14.12 8.94 -34.44 -0.31 -14.43 16 14 H 0.07 2.15 7.30 -52.49 -0.38 1.77 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 17 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 C -0.13 -1.93 5.36 -26.61 -0.14 -2.07 16 22 C 0.11 1.34 6.19 -3.71 -0.02 1.32 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.01 6.20 -51.93 -0.32 0.69 16 28 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 34 H 0.09 1.79 6.93 -51.93 -0.36 1.43 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 38 H 0.01 0.24 7.57 -51.92 -0.39 -0.15 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.84 5.70 -51.93 -0.30 0.55 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 338.41 15.07 5.10 5.10 Total: -1.00 -31.79 338.41 -8.03 -39.82 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.57 Total: -1.28 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.26 Total: -14.16 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.28 Total: -36.00 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.79 -8.03 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706371802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.158 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds