Wall clock time and date at job start Mon Mar 30 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47225 * 2 1 4 4 C 1.32987 * 120.00562 * 125.25789 * 3 2 1 5 5 C 1.50702 * 120.00259 * 175.67338 * 4 3 2 6 6 C 1.47105 * 119.99661 * 355.68301 * 4 3 2 7 7 O 1.21613 * 119.99271 * 263.30360 * 6 4 3 8 8 N 1.34772 * 120.00411 * 83.30284 * 6 4 3 9 9 C 1.46927 * 120.62912 * 174.83956 * 8 6 4 10 10 C 1.53198 * 108.89130 * 126.34361 * 9 8 6 11 11 C 1.53349 * 109.14673 * 54.57888 * 10 9 8 12 12 C 1.53004 * 109.41555 * 178.67642 * 11 10 9 13 13 C 1.50695 * 109.47069 * 295.12427 * 12 11 10 14 14 H 1.07996 * 120.00318 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00067 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00137 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00059 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46645 * 90.00289 * 17 15 13 19 19 H 1.48496 * 109.47412 * 210.00243 * 17 15 13 20 20 H 1.48496 * 109.46885 * 330.00511 * 17 15 13 21 21 C 1.53040 * 109.60922 * 298.71055 * 11 10 9 22 22 C 1.46929 * 120.62992 * 354.86699 * 8 6 4 23 23 H 1.08995 * 109.47361 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47468 * 300.00730 * 1 2 3 25 25 H 1.09007 * 109.46654 * 60.00316 * 1 2 3 26 26 H 1.08994 * 109.47468 * 239.99269 * 2 1 3 27 27 H 1.08999 * 109.46683 * 119.99295 * 2 1 3 28 28 H 1.08004 * 119.99418 * 305.25842 * 3 2 1 29 29 H 1.09003 * 109.46796 * 275.04606 * 5 4 3 30 30 H 1.08995 * 109.46665 * 35.04243 * 5 4 3 31 31 H 1.09002 * 109.47079 * 155.04766 * 5 4 3 32 32 H 1.08996 * 109.58712 * 246.20067 * 9 8 6 33 33 H 1.08993 * 109.58893 * 6.48755 * 9 8 6 34 34 H 1.09000 * 109.49898 * 174.65637 * 10 9 8 35 35 H 1.08996 * 109.49696 * 294.75755 * 10 9 8 36 36 H 1.08999 * 109.42434 * 58.75374 * 11 10 9 37 37 H 1.08995 * 109.47138 * 55.12932 * 12 11 10 38 38 H 1.09008 * 109.46834 * 175.12531 * 12 11 10 39 39 H 0.96998 * 119.99943 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.49675 * 301.42608 * 21 11 10 41 41 H 1.08996 * 109.52885 * 181.34274 * 21 11 10 42 42 H 1.08997 * 109.58705 * 353.37438 * 22 8 6 43 43 H 1.08998 * 109.58673 * 113.65785 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8808 1.8262 0.9404 5 6 3.4589 3.2169 0.8850 6 6 3.2552 0.9171 2.0346 7 8 2.6807 0.9842 3.1043 8 7 4.2349 0.0098 1.8516 9 6 4.6974 -0.8277 2.9666 10 6 4.6209 -2.2991 2.5468 11 6 5.4065 -2.4919 1.2440 12 6 5.3617 -3.9660 0.8365 13 6 6.0838 -4.7943 1.8677 14 1 6.5297 -4.3173 2.7279 15 6 6.1753 -6.1613 1.7130 16 7 6.8051 -6.8843 2.6133 17 14 5.4035 -6.9867 0.2256 18 1 6.3953 -7.0451 -0.8782 19 1 4.9829 -8.3644 0.5865 20 1 4.2189 -6.2067 -0.2142 21 6 4.7834 -1.6379 0.1374 22 6 4.8612 -0.1601 0.5333 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.7033 2.1099 -0.7638 29 1 4.3363 3.2201 0.2382 30 1 2.7125 3.9050 0.4883 31 1 3.7461 3.5312 1.8884 32 1 5.7276 -0.5713 3.2135 33 1 4.0613 -0.6624 3.8361 34 1 5.0500 -2.9238 3.3302 35 1 3.5793 -2.5783 2.3878 36 1 6.4422 -2.1887 1.3970 37 1 4.3242 -4.2930 0.7693 38 1 5.8452 -4.0899 -0.1326 39 1 6.8691 -7.8460 2.5046 40 1 3.7404 -1.9236 0.0010 41 1 5.3281 -1.7942 -0.7937 42 1 4.3316 0.4440 -0.2034 43 1 5.9041 0.1532 0.5811 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706371802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:32 Heat of formation + Delta-G solvation = -66.463990 kcal Electronic energy + Delta-G solvation = -20978.237203 eV Core-core repulsion = 18021.796002 eV Total energy + Delta-G solvation = -2956.441201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46744 -38.81395 -36.84279 -35.62843 -34.04213 -33.13943 -31.99092 -30.34456 -27.88573 -26.52097 -24.77318 -23.73615 -23.23476 -22.18660 -20.76038 -19.36318 -18.73359 -17.70245 -16.89385 -16.52763 -16.35063 -15.53111 -15.34881 -15.22422 -14.98184 -14.57205 -14.41996 -14.18149 -14.16913 -13.79329 -13.72012 -13.45299 -13.26843 -13.12209 -12.87900 -12.86029 -12.39643 -12.16495 -12.06363 -11.99469 -11.88322 -11.72190 -11.33521 -11.16268 -11.04990 -10.79394 -10.70832 -9.84723 -9.64976 -8.25566 -6.27787 0.85683 1.35512 1.38139 1.49062 1.54042 2.07164 2.37911 3.10143 3.49764 3.82455 3.90735 3.99967 4.06789 4.13521 4.19297 4.37002 4.39257 4.50695 4.52644 4.56884 4.64636 4.76147 4.80146 4.83070 4.85671 4.93948 4.98900 5.06614 5.08415 5.17799 5.21120 5.21550 5.26554 5.29270 5.43118 5.46673 5.58538 5.67931 5.70985 5.74859 6.33983 6.41180 6.80243 7.09013 7.36169 8.91133 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.004918 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.690198 B = 5691.986737 C = 6149.333630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.096 4.096 4 C -0.182 4.182 5 C -0.098 4.098 6 C 0.554 3.446 7 O -0.595 6.595 8 N -0.601 5.601 9 C 0.115 3.885 10 C -0.110 4.110 11 C -0.069 4.069 12 C -0.006 4.006 13 C -0.519 4.519 14 H 0.035 0.965 15 C 0.001 3.999 16 N -0.955 5.955 17 Si 0.947 3.053 18 H -0.265 1.265 19 H -0.290 1.290 20 H -0.248 1.248 21 C -0.125 4.125 22 C 0.111 3.889 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.036 0.964 28 H 0.161 0.839 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.011 0.989 38 H 0.022 0.978 39 H 0.263 0.737 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.564 19.590 -11.576 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.115 4.115 4 C -0.185 4.185 5 C -0.155 4.155 6 C 0.345 3.655 7 O -0.476 6.476 8 N -0.332 5.332 9 C -0.008 4.008 10 C -0.148 4.148 11 C -0.087 4.087 12 C -0.043 4.043 13 C -0.557 4.557 14 H 0.054 0.946 15 C -0.195 4.195 16 N -0.596 5.596 17 Si 0.771 3.229 18 H -0.190 1.190 19 H -0.216 1.216 20 H -0.172 1.172 21 C -0.163 4.163 22 C -0.011 4.011 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.055 0.945 28 H 0.178 0.822 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.127 0.873 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.795 19.453 -10.974 24.004 hybrid contribution 0.050 -1.307 0.410 1.371 sum -8.745 18.146 -10.564 22.745 Atomic orbital electron populations 1.21658 0.93957 1.02063 1.02349 1.20888 0.97452 0.94489 1.02241 1.23597 0.94078 0.97278 0.96503 1.21555 1.03388 0.97946 0.95566 1.20692 1.02091 0.90157 1.02544 1.19202 0.78110 0.80085 0.88126 1.90757 1.54499 1.72696 1.29689 1.48318 1.36539 1.36439 1.11895 1.21551 0.99858 0.89854 0.89518 1.21777 0.99632 0.94607 0.98767 1.20977 0.98483 0.95015 0.94249 1.19572 0.95645 0.93495 0.95602 1.21491 1.33982 0.92236 1.07968 0.94620 1.25994 0.95615 0.98433 0.99437 1.70078 1.45290 1.06599 1.37639 0.85711 0.80106 0.77445 0.79681 1.18962 1.21602 1.17197 1.21996 1.01502 0.93969 0.98825 1.21945 0.99219 0.96914 0.82998 0.92629 0.93953 0.90119 0.88619 0.94478 0.82192 0.88970 0.88971 0.93242 0.90563 0.91064 0.92463 0.93615 0.92215 0.97048 0.95968 0.92777 0.92063 0.88906 0.87327 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.11 -2.22 6.00 29.85 0.18 -2.04 16 3 C -0.10 -1.58 8.41 24.52 0.21 -1.37 16 4 C -0.18 -3.74 4.15 -18.70 -0.08 -3.82 16 5 C -0.10 -1.43 10.02 71.24 0.71 -0.71 16 6 C 0.55 16.49 5.14 86.57 0.44 16.94 16 7 O -0.59 -23.14 16.52 -4.07 -0.07 -23.21 16 8 N -0.60 -16.88 2.85 -823.17 -2.35 -19.22 16 9 C 0.11 3.73 6.43 86.36 0.56 4.28 16 10 C -0.11 -4.09 5.21 30.78 0.16 -3.93 16 11 C -0.07 -2.47 2.10 -10.66 -0.02 -2.50 16 12 C -0.01 -0.26 3.52 29.85 0.10 -0.15 16 13 C -0.52 -29.19 8.94 25.60 0.23 -28.96 16 14 H 0.04 2.21 7.30 -2.91 -0.02 2.19 16 15 C 0.00 0.07 5.47 84.65 0.46 0.54 16 16 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 17 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 18 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 20 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 21 C -0.12 -3.28 5.36 30.67 0.16 -3.12 16 22 C 0.11 2.42 6.19 86.36 0.53 2.95 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 0.99 6.20 -2.39 -0.01 0.98 16 28 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.05 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.52 6.99 -2.39 -0.02 2.50 16 34 H 0.06 2.47 6.93 -2.39 -0.02 2.45 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 38 H 0.02 0.95 7.57 -2.38 -0.02 0.93 16 39 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.11 1.81 5.70 -2.39 -0.01 1.79 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.63 338.41 5.04 -67.59 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.90 Total: 12.39 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 4.37 Total: -23.71 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.05 Total: -79.00 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.07 Total: -23.21 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -72.63 5.04 -67.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706371802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.126 kcal (2) G-P(sol) polarization free energy of solvation -72.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds