Wall clock time and date at job start Mon Mar 30 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 N 1.46499 * 109.47198 * 59.99818 * 12 2 1 14 14 C 1.34777 * 120.00065 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99650 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00075 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.46969 * 179.97438 * 16 14 13 18 18 H 1.09004 * 115.55084 * 29.33079 * 17 16 14 19 19 C 1.53005 * 117.49906 * 243.62202 * 17 16 14 20 20 C 1.52999 * 117.50101 * 174.99745 * 17 16 14 21 21 H 1.08998 * 117.50183 * 215.00129 * 20 17 16 22 22 C 1.53005 * 117.49614 * 0.02562 * 20 17 16 23 23 C 1.52998 * 117.49791 * 248.74419 * 22 20 17 24 24 C 1.52994 * 117.49793 * 180.08491 * 22 20 17 25 25 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 30 30 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 33 33 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 34 34 H 0.97000 * 119.99795 * 0.02562 * 13 12 2 35 35 H 1.09002 * 109.46702 * 299.99407 * 16 14 13 36 36 H 1.08998 * 109.47115 * 59.99614 * 16 14 13 37 37 H 1.08995 * 117.49401 * 359.97438 * 19 17 16 38 38 H 1.09004 * 117.49819 * 145.02101 * 19 17 16 39 39 H 1.09001 * 115.55060 * 34.41289 * 22 20 17 40 40 H 1.09002 * 117.49720 * 0.02562 * 23 22 20 41 41 H 1.09007 * 117.49988 * 145.01573 * 23 22 20 42 42 H 1.08998 * 117.49774 * 214.97415 * 24 22 20 43 43 H 1.08998 * 117.50234 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.1365 -2.2942 3.6036 10 1 3.1332 -0.1973 4.8220 11 1 1.1526 -1.5964 4.8103 12 6 2.0400 -0.7211 -1.2493 13 7 1.5517 -0.0305 -2.4454 14 6 1.8769 -0.4911 -3.6696 15 8 2.5734 -1.4777 -3.7809 16 6 1.3750 0.2197 -4.9000 17 6 1.8849 -0.5015 -6.1492 18 1 2.0520 -1.5729 -6.0383 19 6 2.8294 0.2692 -7.0739 20 6 1.3869 -0.0012 -7.5066 21 1 1.2264 -0.7433 -8.2887 22 6 0.4175 1.1825 -7.5109 23 6 -1.0258 0.9121 -7.9406 24 6 -0.0821 1.6816 -8.8681 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7006 1.1553 3.4844 32 1 3.1300 -0.7215 -1.2491 33 1 1.6766 -1.7488 -1.2493 34 1 0.9943 0.7584 -2.3564 35 1 0.2850 0.2204 -4.8999 36 1 1.7390 1.2471 -4.9000 37 1 3.0870 1.2902 -6.7924 38 1 3.6182 -0.2951 -7.5714 39 1 0.5792 1.9255 -6.7299 40 1 -1.2848 -0.1092 -8.2198 41 1 -1.8136 1.4774 -7.4425 42 1 -0.2494 2.7529 -8.9799 43 1 0.2801 1.1670 -9.7581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712927442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:16 Heat of formation + Delta-G solvation = -8.452045 kcal Electronic energy + Delta-G solvation = -20053.580386 eV Core-core repulsion = 17099.654771 eV Total energy + Delta-G solvation = -2953.925615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61387 -38.42676 -36.38556 -35.44332 -33.23583 -31.01044 -29.27178 -25.72494 -25.54055 -24.71213 -23.92444 -22.57424 -21.46665 -20.42118 -19.12949 -18.68694 -17.09716 -15.90119 -15.74512 -15.46151 -15.06120 -14.79514 -14.42639 -13.98494 -13.27439 -13.15837 -12.99251 -12.85016 -12.19053 -12.13589 -11.79770 -11.54267 -11.47468 -11.35254 -11.20982 -11.09971 -10.87217 -10.76040 -10.65950 -10.38330 -10.20229 -9.86811 -9.63148 -9.54783 -9.48525 -9.17080 -8.77134 -8.44071 -8.28240 -6.02206 -4.12144 3.11730 3.27087 3.33191 3.35730 3.40500 3.78611 4.05525 4.30344 4.40405 4.65193 4.73065 4.88265 5.03567 5.08509 5.11872 5.24633 5.30562 5.43053 5.53380 5.63741 5.67427 5.72505 5.80076 5.90517 5.97831 6.12931 6.26500 6.31168 6.34821 6.51882 6.80218 6.82729 6.94688 7.02414 7.07380 7.36315 7.55916 7.69736 8.01240 8.09082 8.18033 8.39167 8.76707 8.89333 9.53801 10.99243 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038937 B = 0.003426 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.932941 B = 8171.485416 C = 8541.736635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.719 5.719 14 C 0.505 3.495 15 O -0.553 6.553 16 C -0.110 4.110 17 C -0.124 4.124 18 H 0.118 0.882 19 C -0.170 4.170 20 C -0.124 4.124 21 H 0.103 0.897 22 C -0.122 4.122 23 C -0.178 4.178 24 C -0.180 4.180 25 H 0.085 0.915 26 H 0.006 0.994 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.006 0.994 30 H 0.085 0.915 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.397 0.603 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 3.350 -18.060 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.370 5.370 14 C 0.291 3.709 15 O -0.432 6.432 16 C -0.150 4.150 17 C -0.143 4.143 18 H 0.136 0.864 19 C -0.207 4.207 20 C -0.143 4.143 21 H 0.121 0.879 22 C -0.140 4.140 23 C -0.215 4.215 24 C -0.217 4.217 25 H 0.104 0.896 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.025 0.975 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.111 0.889 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.289 2.751 -17.962 18.316 hybrid contribution 0.036 -0.022 0.930 0.931 sum -2.253 2.729 -17.032 17.396 Atomic orbital electron populations 1.21828 0.97772 0.99154 1.00075 1.18360 0.92788 0.92752 0.90636 1.21824 0.98565 0.98368 1.00042 1.21041 1.31275 1.12131 0.89926 0.92401 1.24881 0.94865 0.94942 0.98862 1.69811 1.36730 1.22865 1.23098 0.86521 0.78624 0.79787 0.82991 1.19755 1.21060 1.21065 1.21691 0.98069 0.95759 0.83567 1.46326 1.52717 1.31795 1.06112 1.20515 0.80684 0.84858 0.84892 1.90645 1.38701 1.26890 1.86965 1.21201 1.02190 0.99736 0.91851 1.22110 1.02723 1.00502 0.88942 0.86354 1.23091 0.92533 1.01375 1.03735 1.21861 0.95063 0.98742 0.98594 0.87931 1.21735 0.94816 0.99051 0.98390 1.22954 0.93008 1.01578 1.03949 1.22938 1.04397 1.00204 0.94152 0.89598 0.97490 0.95479 0.95470 0.97498 0.89643 0.93077 0.92846 0.92846 0.76790 0.88720 0.89283 0.88801 0.88790 0.87636 0.88772 0.88746 0.88916 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.07 37.16 0.30 -2.64 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.31 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.64 9.35 55.43 0.52 -23.13 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 N -0.72 -12.76 4.96 -60.29 -0.30 -13.06 16 14 C 0.50 8.65 7.83 -10.98 -0.09 8.56 16 15 O -0.55 -11.57 15.56 5.55 0.09 -11.48 16 16 C -0.11 -1.36 4.78 -27.88 -0.13 -1.49 16 17 C -0.12 -1.50 5.41 -90.62 -0.49 -1.99 16 18 H 0.12 1.67 7.30 -51.93 -0.38 1.29 16 19 C -0.17 -1.78 9.90 -26.73 -0.26 -2.04 16 20 C -0.12 -1.22 5.85 -90.61 -0.53 -1.75 16 21 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 22 C -0.12 -1.08 5.09 -90.62 -0.46 -1.54 16 23 C -0.18 -1.44 10.25 -26.70 -0.27 -1.72 16 24 C -0.18 -1.39 10.25 -26.70 -0.27 -1.66 16 25 H 0.09 2.14 6.06 -51.93 -0.31 1.83 16 26 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 30 H 0.08 2.13 6.08 -51.93 -0.32 1.81 16 31 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.40 6.31 6.16 -40.82 -0.25 6.05 16 35 H 0.09 1.03 8.03 -51.93 -0.42 0.62 16 36 H 0.09 0.96 7.62 -51.93 -0.40 0.56 16 37 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.11 0.92 7.35 -51.93 -0.38 0.54 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -28.41 342.26 -9.29 -37.70 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.35 Total: 5.87 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.38 Total: -16.83 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.22 Total: -36.18 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.41 -9.29 -37.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712927442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.251 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds