Wall clock time and date at job start Mon Mar 30 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00221 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00561 * 2 1 3 13 13 N 1.46499 * 109.47198 * 59.99818 * 12 2 1 14 14 C 1.34777 * 120.00065 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99650 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00075 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.46969 * 179.97438 * 16 14 13 18 18 H 1.09004 * 115.55084 * 29.33079 * 17 16 14 19 19 C 1.53005 * 117.49906 * 243.62202 * 17 16 14 20 20 C 1.52999 * 117.50101 * 174.99745 * 17 16 14 21 21 H 1.08998 * 117.50183 * 215.00129 * 20 17 16 22 22 C 1.53005 * 117.49614 * 0.02562 * 20 17 16 23 23 C 1.52998 * 117.49791 * 248.74419 * 22 20 17 24 24 C 1.52994 * 117.49793 * 180.08491 * 22 20 17 25 25 H 1.09004 * 109.46783 * 299.99970 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99629 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47438 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47069 * 300.00573 * 3 2 1 30 30 H 1.09004 * 109.46658 * 59.99952 * 3 2 1 31 31 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47211 * 180.02562 * 12 2 1 33 33 H 1.09007 * 109.46376 * 299.99965 * 12 2 1 34 34 H 0.97000 * 119.99795 * 0.02562 * 13 12 2 35 35 H 1.09002 * 109.46702 * 299.99407 * 16 14 13 36 36 H 1.08998 * 109.47115 * 59.99614 * 16 14 13 37 37 H 1.08995 * 117.49401 * 359.97438 * 19 17 16 38 38 H 1.09004 * 117.49819 * 145.02101 * 19 17 16 39 39 H 1.09001 * 115.55060 * 34.41289 * 22 20 17 40 40 H 1.09002 * 117.49720 * 0.02562 * 23 22 20 41 41 H 1.09007 * 117.49988 * 145.01573 * 23 22 20 42 42 H 1.08998 * 117.49774 * 214.97415 * 24 22 20 43 43 H 1.08998 * 117.50234 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.1365 -2.2942 3.6036 10 1 3.1332 -0.1973 4.8220 11 1 1.1526 -1.5964 4.8103 12 6 2.0400 -0.7211 -1.2493 13 7 1.5517 -0.0305 -2.4454 14 6 1.8769 -0.4911 -3.6696 15 8 2.5734 -1.4777 -3.7809 16 6 1.3750 0.2197 -4.9000 17 6 1.8849 -0.5015 -6.1492 18 1 2.0520 -1.5729 -6.0383 19 6 2.8294 0.2692 -7.0739 20 6 1.3869 -0.0012 -7.5066 21 1 1.2264 -0.7433 -8.2887 22 6 0.4175 1.1825 -7.5109 23 6 -1.0258 0.9121 -7.9406 24 6 -0.0821 1.6816 -8.8681 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7006 1.1553 3.4844 32 1 3.1300 -0.7215 -1.2491 33 1 1.6766 -1.7488 -1.2493 34 1 0.9943 0.7584 -2.3564 35 1 0.2850 0.2204 -4.8999 36 1 1.7390 1.2471 -4.9000 37 1 3.0870 1.2902 -6.7924 38 1 3.6182 -0.2951 -7.5714 39 1 0.5792 1.9255 -6.7299 40 1 -1.2848 -0.1092 -8.2198 41 1 -1.8136 1.4774 -7.4425 42 1 -0.2494 2.7529 -8.9799 43 1 0.2801 1.1670 -9.7581 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712927442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:16 Heat of formation + Delta-G solvation = -22.708991 kcal Electronic energy + Delta-G solvation = -20054.198613 eV Core-core repulsion = 17099.654771 eV Total energy + Delta-G solvation = -2954.543842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89412 -39.40598 -38.06917 -36.23992 -34.96382 -32.81758 -30.44952 -27.55932 -27.42033 -26.46744 -24.63609 -23.18207 -22.45492 -21.60609 -20.61614 -19.95421 -18.45553 -17.69390 -16.80237 -16.72260 -16.41909 -16.29247 -15.79912 -14.95133 -14.85048 -14.63268 -14.38812 -13.97964 -13.85912 -13.42695 -13.12283 -13.09905 -12.67494 -12.58821 -12.40938 -12.36025 -12.24751 -12.17546 -12.14417 -11.88776 -11.48353 -11.44204 -11.25898 -10.81419 -10.66974 -10.63829 -10.40379 -10.21957 -9.90052 -8.03054 -6.18776 1.40465 1.44692 1.54101 1.76132 2.33060 2.49123 2.67020 3.20421 3.32218 3.57210 3.82003 3.93275 4.03293 4.17165 4.38618 4.39787 4.43266 4.46900 4.51703 4.64505 4.70401 4.75194 4.84154 4.88128 4.97372 5.01873 5.06397 5.10994 5.13044 5.19894 5.27258 5.34249 5.34671 5.40722 5.43768 5.63196 5.66962 5.67536 6.15668 6.22035 6.43625 6.73467 6.85777 7.39329 7.49112 8.95952 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038937 B = 0.003426 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.932941 B = 8171.485416 C = 8541.736635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.148 3.852 13 N -0.713 5.713 14 C 0.502 3.498 15 O -0.595 6.595 16 C -0.095 4.095 17 C -0.147 4.147 18 H 0.091 0.909 19 C -0.170 4.170 20 C -0.104 4.104 21 H 0.107 0.893 22 C -0.133 4.133 23 C -0.180 4.180 24 C -0.173 4.173 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.260 0.740 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.409 0.591 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 4.687 -19.473 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.023 3.977 13 N -0.364 5.364 14 C 0.291 3.709 15 O -0.476 6.476 16 C -0.134 4.134 17 C -0.166 4.166 18 H 0.109 0.891 19 C -0.207 4.207 20 C -0.122 4.122 21 H 0.125 0.875 22 C -0.151 4.151 23 C -0.217 4.217 24 C -0.210 4.210 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.247 0.753 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.081 4.113 -19.388 20.058 hybrid contribution 0.286 -0.465 1.326 1.434 sum -2.795 3.648 -18.062 18.637 Atomic orbital electron populations 1.21669 0.97042 0.98616 1.00506 1.18357 0.93299 0.93061 0.90241 1.21665 0.97863 0.97790 1.00479 1.21322 1.31595 1.12194 0.91733 0.93948 1.25442 0.95126 0.95620 1.00932 1.69907 1.36952 1.23332 1.23556 0.85717 0.78144 0.78740 0.80264 1.20129 1.20636 1.20653 1.21226 0.96805 0.94998 0.84623 1.46165 1.52916 1.31992 1.05359 1.21394 0.79546 0.84284 0.85715 1.90633 1.40552 1.28923 1.87538 1.21186 1.03232 1.00060 0.88964 1.21992 1.05204 0.99275 0.90096 0.89076 1.23183 0.93043 1.01508 1.02928 1.21872 0.94843 0.98823 0.96696 0.87532 1.21765 0.94989 0.98868 0.99495 1.23024 0.92808 1.01799 1.04056 1.23011 1.03503 1.00840 0.93663 0.91867 0.94220 0.96455 0.96417 0.94208 0.91922 0.93003 0.94702 0.94731 0.75337 0.86676 0.86826 0.87865 0.88669 0.87131 0.88906 0.88027 0.87918 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.07 71.98 0.58 -4.75 16 2 C 0.05 2.37 0.50 -52.93 -0.03 2.34 16 3 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 4 C -0.53 -28.32 8.01 25.60 0.21 -28.12 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.51 5.15 84.65 0.44 1.95 16 7 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 8 Si 0.94 42.83 29.54 68.60 2.03 44.86 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.37 4.50 86.38 0.39 6.76 16 13 N -0.71 -24.32 4.96 -463.04 -2.30 -26.61 16 14 C 0.50 16.70 7.83 87.66 0.69 17.39 16 15 O -0.60 -25.16 15.56 -3.04 -0.05 -25.21 16 16 C -0.10 -2.12 4.78 29.85 0.14 -1.98 16 17 C -0.15 -3.36 5.41 -10.79 -0.06 -3.42 16 18 H 0.09 2.60 7.30 -2.38 -0.02 2.58 16 19 C -0.17 -3.22 9.90 30.60 0.30 -2.92 16 20 C -0.10 -1.81 5.85 -10.79 -0.06 -1.87 16 21 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 22 C -0.13 -1.95 5.09 -10.79 -0.05 -2.01 16 23 C -0.18 -2.42 10.25 30.62 0.31 -2.10 16 24 C -0.17 -2.16 10.25 30.62 0.31 -1.85 16 25 H 0.06 3.11 6.06 -2.38 -0.01 3.10 16 26 H 0.04 1.45 6.86 -2.38 -0.02 1.43 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 30 H 0.06 3.08 6.08 -2.38 -0.01 3.07 16 31 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 32 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.41 11.86 6.16 -92.71 -0.57 11.29 16 35 H 0.12 2.13 8.03 -2.39 -0.02 2.11 16 36 H 0.11 2.02 7.62 -2.39 -0.02 2.00 16 37 H 0.10 1.77 8.03 -2.39 -0.02 1.75 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.11 1.53 7.35 -2.39 -0.02 1.51 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -61.56 342.26 4.04 -57.52 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.41 Total: 22.46 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 3.75 Total: -25.31 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.10 Total: -74.32 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -61.56 4.04 -57.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712927442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.812 kcal (2) G-P(sol) polarization free energy of solvation -61.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds