Wall clock time and date at job start Mon Mar 30 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32994 * 119.99757 * 2 1 4 4 C 1.50700 * 119.99733 * 182.59535 * 3 2 1 5 5 C 1.52998 * 109.47058 * 60.58627 * 4 3 2 6 6 C 1.53006 * 109.46625 * 180.58518 * 4 3 2 7 7 C 1.52992 * 109.47320 * 300.58658 * 4 3 2 8 8 C 1.47099 * 120.00137 * 180.02562 * 2 1 3 9 9 O 1.21608 * 120.00003 * 185.90454 * 8 2 1 10 10 N 1.34779 * 120.00032 * 5.90860 * 8 2 1 11 11 C 1.46501 * 120.00103 * 185.02492 * 10 8 2 12 12 C 1.52996 * 109.47040 * 184.92409 * 11 10 8 13 13 C 1.50698 * 115.55318 * 53.98401 * 12 11 10 14 14 H 1.07998 * 120.00261 * 211.51706 * 13 12 11 15 15 C 1.37883 * 119.99951 * 31.23225 * 13 12 11 16 16 N 1.31512 * 119.99785 * 356.72490 * 15 13 12 17 17 Si 1.86798 * 120.00099 * 176.72049 * 15 13 12 18 18 H 1.48501 * 109.47120 * 60.00121 * 17 15 13 19 19 H 1.48496 * 109.47179 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46845 * 300.00426 * 17 15 13 21 21 C 1.53007 * 117.49715 * 199.64830 * 12 11 10 22 22 C 1.53000 * 117.50086 * 268.30634 * 12 11 10 23 23 H 1.09005 * 109.46734 * 274.42382 * 1 2 3 24 24 H 1.08997 * 109.47276 * 34.43013 * 1 2 3 25 25 H 1.09004 * 109.46860 * 154.43149 * 1 2 3 26 26 H 1.08004 * 119.99954 * 2.59741 * 3 2 1 27 27 H 1.09010 * 109.47343 * 83.79474 * 5 4 3 28 28 H 1.09002 * 109.46854 * 203.78922 * 5 4 3 29 29 H 1.08997 * 109.47354 * 323.79325 * 5 4 3 30 30 H 1.08998 * 109.47362 * 60.00461 * 6 4 3 31 31 H 1.09010 * 109.46701 * 179.97438 * 6 4 3 32 32 H 1.08992 * 109.47410 * 299.99687 * 6 4 3 33 33 H 1.09003 * 109.47093 * 26.04195 * 7 4 3 34 34 H 1.08997 * 109.47570 * 146.04593 * 7 4 3 35 35 H 1.09006 * 109.47186 * 266.04701 * 7 4 3 36 36 H 0.97003 * 119.99957 * 5.03448 * 10 8 2 37 37 H 1.09000 * 109.47005 * 64.92449 * 11 10 8 38 38 H 1.09001 * 109.46827 * 304.92554 * 11 10 8 39 39 H 0.97002 * 119.99691 * 184.99795 * 16 15 13 40 40 H 1.09001 * 117.49899 * 215.00108 * 21 12 11 41 41 H 1.08997 * 117.49736 * 0.02584 * 21 12 11 42 42 H 1.09005 * 117.49503 * 359.97438 * 22 12 11 43 43 H 1.08998 * 117.50137 * 144.97086 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6778 1.1524 -0.0591 5 6 4.1378 0.4729 -1.3504 6 6 4.1885 2.5945 -0.0317 7 6 4.2358 0.3908 1.1447 8 6 2.2426 -1.2739 -0.0006 9 8 3.4538 -1.2767 0.1078 10 7 1.5741 -2.4380 -0.1212 11 6 2.2925 -3.7100 -0.0115 12 6 1.3329 -4.8647 -0.3062 13 6 0.5931 -4.7769 -1.6162 14 1 -0.4007 -5.1904 -1.7039 15 6 1.1828 -4.1635 -2.7011 16 7 2.3637 -3.5984 -2.5755 17 14 0.3044 -4.1352 -4.3495 18 1 -0.9970 -3.4348 -4.2049 19 1 1.1434 -3.4213 -5.3453 20 1 0.0688 -5.5277 -4.8087 21 6 1.7298 -6.2569 0.1890 22 6 0.5976 -5.4924 0.8797 23 1 -0.3633 0.0793 1.0247 24 1 -0.3634 0.8476 -0.5810 25 1 -0.3633 -0.9271 -0.4436 26 1 1.6327 2.0866 0.0424 27 1 4.1218 1.1951 -2.1667 28 1 5.1515 0.0940 -1.2203 29 1 3.4678 -0.3545 -1.5842 30 1 3.8608 3.0786 0.8882 31 1 5.2778 2.5950 -0.0740 32 1 3.7911 3.1371 -0.8894 33 1 3.4996 -0.3362 1.4878 34 1 5.1501 -0.1270 0.8551 35 1 4.4551 1.0930 1.9491 36 1 0.6173 -2.4335 -0.2809 37 1 2.6903 -3.8167 0.9976 38 1 3.1127 -3.7271 -0.7292 39 1 2.7464 -3.1046 -3.3175 40 1 1.4557 -7.1093 -0.4326 41 1 2.6742 -6.3501 0.7251 42 1 0.7979 -5.0830 1.8698 43 1 -0.4213 -5.8414 0.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:21 Heat of formation + Delta-G solvation = 31.290320 kcal Electronic energy + Delta-G solvation = -21626.283708 eV Core-core repulsion = 18674.081451 eV Total energy + Delta-G solvation = -2952.202257 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.88047 -37.15454 -35.81766 -33.69063 -32.46137 -31.97584 -26.91962 -26.67346 -26.50504 -26.07507 -25.34102 -21.95073 -21.20328 -19.44289 -19.22969 -17.89468 -16.28250 -15.64927 -15.09184 -14.87791 -14.65135 -14.16033 -13.76351 -13.62138 -13.25714 -13.00649 -12.75579 -12.65461 -12.10139 -11.96189 -11.77133 -11.70036 -11.51808 -11.31781 -11.06067 -10.83597 -10.52995 -10.45038 -10.36591 -10.26398 -10.10081 -9.98125 -9.61951 -9.03651 -8.84452 -8.53873 -8.40991 -8.19139 -7.46757 -5.95922 -4.17885 1.96488 3.22298 3.30447 3.31322 4.13537 4.28620 4.36417 4.95207 5.03628 5.22076 5.46220 5.48582 5.55894 5.66840 5.68420 5.87857 5.96196 6.01805 6.04772 6.14406 6.16406 6.21495 6.32345 6.42488 6.48473 6.56616 6.62015 6.64171 6.69419 6.74978 6.86523 6.88741 6.96667 7.10200 7.15732 7.23558 7.26427 7.61767 7.81806 8.00412 8.32558 8.70817 8.87549 9.36412 9.44693 10.90055 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.006853 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.942296 B = 4084.789744 C = 4617.664979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.174 4.174 3 C -0.083 4.083 4 C -0.031 4.031 5 C -0.121 4.121 6 C -0.139 4.139 7 C -0.108 4.108 8 C 0.525 3.475 9 O -0.530 6.530 10 N -0.674 5.674 11 C 0.170 3.830 12 C 0.036 3.964 13 C -0.498 4.498 14 H 0.059 0.941 15 C 0.075 3.925 16 N -0.860 5.860 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.202 4.202 22 C -0.214 4.214 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.026 0.974 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.009 0.991 36 H 0.395 0.605 37 H 0.013 0.987 38 H 0.116 0.884 39 H 0.263 0.737 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 8.888 4.560 10.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.177 4.177 3 C -0.102 4.102 4 C -0.031 4.031 5 C -0.178 4.178 6 C -0.197 4.197 7 C -0.165 4.165 8 C 0.313 3.687 9 O -0.412 6.412 10 N -0.321 5.321 11 C 0.047 3.953 12 C 0.036 3.964 13 C -0.535 4.535 14 H 0.077 0.923 15 C -0.130 4.130 16 N -0.496 5.496 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.241 4.241 22 C -0.251 4.251 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.131 0.869 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.230 0.770 37 H 0.031 0.969 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.068 8.885 4.504 9.962 hybrid contribution -1.069 -0.043 -1.019 1.478 sum -1.138 8.842 3.485 9.572 Atomic orbital electron populations 1.20769 0.91673 1.02904 1.01840 1.21621 0.95982 0.94210 1.05848 1.23508 0.95809 0.96255 0.94673 1.19551 0.91184 0.94510 0.97904 1.22014 1.02229 0.99779 0.93820 1.21988 1.00916 0.96009 1.00741 1.22198 1.02231 0.97792 0.94269 1.18025 0.87475 0.84085 0.79116 1.90874 1.13506 1.87057 1.49785 1.45569 1.11825 1.05416 1.69280 1.20971 0.96504 0.80554 0.97268 1.19278 0.95715 0.89383 0.92048 1.20446 1.01202 1.38891 0.92991 0.92318 1.24993 0.94587 0.94828 0.98555 1.69895 1.15404 1.32642 1.31656 0.86664 0.79428 0.78285 0.83678 1.20276 1.21243 1.20233 1.22948 0.97018 0.99103 1.04997 1.22956 0.96199 1.08660 0.97309 0.91593 0.91858 0.91150 0.86933 0.95454 0.92959 0.90357 0.93215 0.92827 0.93255 0.89787 0.92703 0.97262 0.77046 0.96878 0.86661 0.92670 0.90337 0.91522 0.91432 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.84 36.01 0.35 -1.23 16 2 C -0.17 -2.88 5.52 -102.85 -0.57 -3.45 16 3 C -0.08 -1.25 8.19 -36.13 -0.30 -1.54 16 4 C -0.03 -0.50 0.75 -155.66 -0.12 -0.61 16 5 C -0.12 -2.16 7.64 37.16 0.28 -1.88 16 6 C -0.14 -1.78 8.09 37.16 0.30 -1.48 16 7 C -0.11 -1.84 7.43 37.15 0.28 -1.56 16 8 C 0.52 10.54 5.82 -12.66 -0.07 10.47 16 9 O -0.53 -11.44 8.26 5.27 0.04 -11.40 16 10 N -0.67 -14.21 4.63 -61.49 -0.28 -14.50 16 11 C 0.17 3.95 4.59 -4.04 -0.02 3.93 16 12 C 0.04 0.85 2.09 -155.66 -0.32 0.52 16 13 C -0.50 -12.52 8.48 -34.44 -0.29 -12.81 16 14 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 15 C 0.08 1.90 5.24 -17.82 -0.09 1.81 16 16 N -0.86 -22.45 9.77 55.43 0.54 -21.91 16 17 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.20 -4.38 9.96 -26.69 -0.27 -4.65 16 22 C -0.21 -4.42 9.92 -26.69 -0.26 -4.69 16 23 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 25 H 0.07 1.04 6.28 -51.93 -0.33 0.71 16 26 H 0.11 1.40 7.99 -52.48 -0.42 0.99 16 27 H 0.03 0.43 7.91 -51.92 -0.41 0.02 16 28 H 0.05 0.95 7.48 -51.93 -0.39 0.56 16 29 H 0.08 1.64 5.06 -51.93 -0.26 1.38 16 30 H 0.05 0.58 8.12 -51.93 -0.42 0.15 16 31 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.08 1.60 4.77 -54.82 -0.26 1.33 16 34 H 0.05 1.00 7.00 -51.93 -0.36 0.63 16 35 H 0.01 0.13 7.76 -51.93 -0.40 -0.27 16 36 H 0.39 8.09 6.05 -40.82 -0.25 7.84 16 37 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 16 38 H 0.12 3.06 5.95 -51.93 -0.31 2.75 16 39 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -25.89 330.73 -7.99 -33.89 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.16 Total: 11.07 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -1.10 Total: -17.18 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.26 Total: -36.41 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.04 Total: -11.40 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.89 -7.99 -33.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.176 kcal (2) G-P(sol) polarization free energy of solvation -25.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds