Wall clock time and date at job start Mon Mar 30 2020 06:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32994 * 119.99757 * 2 1 4 4 C 1.50700 * 119.99733 * 182.59535 * 3 2 1 5 5 C 1.52998 * 109.47058 * 60.58627 * 4 3 2 6 6 C 1.53006 * 109.46625 * 180.58518 * 4 3 2 7 7 C 1.52992 * 109.47320 * 300.58658 * 4 3 2 8 8 C 1.47099 * 120.00137 * 180.02562 * 2 1 3 9 9 O 1.21608 * 120.00003 * 185.90454 * 8 2 1 10 10 N 1.34779 * 120.00032 * 5.90860 * 8 2 1 11 11 C 1.46501 * 120.00103 * 185.02492 * 10 8 2 12 12 C 1.52996 * 109.47040 * 184.92409 * 11 10 8 13 13 C 1.50698 * 115.55318 * 53.98401 * 12 11 10 14 14 H 1.07998 * 120.00261 * 211.51706 * 13 12 11 15 15 C 1.37883 * 119.99951 * 31.23225 * 13 12 11 16 16 N 1.31512 * 119.99785 * 356.72490 * 15 13 12 17 17 Si 1.86798 * 120.00099 * 176.72049 * 15 13 12 18 18 H 1.48501 * 109.47120 * 60.00121 * 17 15 13 19 19 H 1.48496 * 109.47179 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46845 * 300.00426 * 17 15 13 21 21 C 1.53007 * 117.49715 * 199.64830 * 12 11 10 22 22 C 1.53000 * 117.50086 * 268.30634 * 12 11 10 23 23 H 1.09005 * 109.46734 * 274.42382 * 1 2 3 24 24 H 1.08997 * 109.47276 * 34.43013 * 1 2 3 25 25 H 1.09004 * 109.46860 * 154.43149 * 1 2 3 26 26 H 1.08004 * 119.99954 * 2.59741 * 3 2 1 27 27 H 1.09010 * 109.47343 * 83.79474 * 5 4 3 28 28 H 1.09002 * 109.46854 * 203.78922 * 5 4 3 29 29 H 1.08997 * 109.47354 * 323.79325 * 5 4 3 30 30 H 1.08998 * 109.47362 * 60.00461 * 6 4 3 31 31 H 1.09010 * 109.46701 * 179.97438 * 6 4 3 32 32 H 1.08992 * 109.47410 * 299.99687 * 6 4 3 33 33 H 1.09003 * 109.47093 * 26.04195 * 7 4 3 34 34 H 1.08997 * 109.47570 * 146.04593 * 7 4 3 35 35 H 1.09006 * 109.47186 * 266.04701 * 7 4 3 36 36 H 0.97003 * 119.99957 * 5.03448 * 10 8 2 37 37 H 1.09000 * 109.47005 * 64.92449 * 11 10 8 38 38 H 1.09001 * 109.46827 * 304.92554 * 11 10 8 39 39 H 0.97002 * 119.99691 * 184.99795 * 16 15 13 40 40 H 1.09001 * 117.49899 * 215.00108 * 21 12 11 41 41 H 1.08997 * 117.49736 * 0.02584 * 21 12 11 42 42 H 1.09005 * 117.49503 * 359.97438 * 22 12 11 43 43 H 1.08998 * 117.50137 * 144.97086 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6778 1.1524 -0.0591 5 6 4.1378 0.4729 -1.3504 6 6 4.1885 2.5945 -0.0317 7 6 4.2358 0.3908 1.1447 8 6 2.2426 -1.2739 -0.0006 9 8 3.4538 -1.2767 0.1078 10 7 1.5741 -2.4380 -0.1212 11 6 2.2925 -3.7100 -0.0115 12 6 1.3329 -4.8647 -0.3062 13 6 0.5931 -4.7769 -1.6162 14 1 -0.4007 -5.1904 -1.7039 15 6 1.1828 -4.1635 -2.7011 16 7 2.3637 -3.5984 -2.5755 17 14 0.3044 -4.1352 -4.3495 18 1 -0.9970 -3.4348 -4.2049 19 1 1.1434 -3.4213 -5.3453 20 1 0.0688 -5.5277 -4.8087 21 6 1.7298 -6.2569 0.1890 22 6 0.5976 -5.4924 0.8797 23 1 -0.3633 0.0793 1.0247 24 1 -0.3634 0.8476 -0.5810 25 1 -0.3633 -0.9271 -0.4436 26 1 1.6327 2.0866 0.0424 27 1 4.1218 1.1951 -2.1667 28 1 5.1515 0.0940 -1.2203 29 1 3.4678 -0.3545 -1.5842 30 1 3.8608 3.0786 0.8882 31 1 5.2778 2.5950 -0.0740 32 1 3.7911 3.1371 -0.8894 33 1 3.4996 -0.3362 1.4878 34 1 5.1501 -0.1270 0.8551 35 1 4.4551 1.0930 1.9491 36 1 0.6173 -2.4335 -0.2809 37 1 2.6903 -3.8167 0.9976 38 1 3.1127 -3.7271 -0.7292 39 1 2.7464 -3.1046 -3.3175 40 1 1.4557 -7.1093 -0.4326 41 1 2.6742 -6.3501 0.7251 42 1 0.7979 -5.0830 1.8698 43 1 -0.4213 -5.8414 0.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797565616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:21 Heat of formation + Delta-G solvation = 18.701212 kcal Electronic energy + Delta-G solvation = -21626.829612 eV Core-core repulsion = 18674.081451 eV Total energy + Delta-G solvation = -2952.748161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34707 -38.84057 -37.29021 -35.12999 -34.21959 -33.58698 -28.12173 -28.07665 -27.85399 -27.65149 -27.18322 -23.41757 -22.89594 -21.05788 -20.79421 -19.44154 -18.04275 -17.03730 -16.80033 -16.52467 -16.32168 -15.70382 -15.28570 -14.86701 -14.71746 -14.54041 -14.17255 -13.85099 -13.65721 -13.40486 -13.25242 -13.00224 -12.94339 -12.88125 -12.70733 -12.50231 -12.31159 -12.08395 -11.76761 -11.64046 -11.56896 -11.38697 -11.32443 -10.91721 -10.64677 -10.20241 -9.85653 -9.77563 -9.13609 -7.88171 -6.16112 0.67584 1.42006 1.45729 1.51218 2.41930 2.63080 2.79629 3.13846 3.67633 3.82086 4.00479 4.25983 4.29458 4.30773 4.46669 4.52187 4.56436 4.77063 4.80357 4.85028 4.86377 4.87835 4.96189 4.96925 4.98100 5.03340 5.14887 5.17883 5.28419 5.31561 5.32428 5.42588 5.53724 5.56531 5.61255 5.64971 5.72904 5.94517 6.05054 6.13736 6.41125 6.82331 7.20051 7.47702 7.79413 8.93428 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.006853 C = 0.006062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.942296 B = 4084.789744 C = 4617.664979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.193 4.193 3 C -0.067 4.067 4 C -0.037 4.037 5 C -0.114 4.114 6 C -0.133 4.133 7 C -0.100 4.100 8 C 0.515 3.485 9 O -0.552 6.552 10 N -0.677 5.677 11 C 0.185 3.815 12 C 0.007 3.993 13 C -0.506 4.506 14 H 0.055 0.945 15 C 0.038 3.962 16 N -0.878 5.878 17 Si 0.944 3.056 18 H -0.267 1.267 19 H -0.294 1.294 20 H -0.278 1.278 21 C -0.203 4.203 22 C -0.188 4.188 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.153 0.847 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.396 0.604 37 H 0.009 0.991 38 H 0.078 0.922 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.521 10.809 5.075 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.196 4.196 3 C -0.086 4.086 4 C -0.037 4.037 5 C -0.172 4.172 6 C -0.190 4.190 7 C -0.157 4.157 8 C 0.306 3.694 9 O -0.436 6.436 10 N -0.325 5.325 11 C 0.061 3.939 12 C 0.006 3.994 13 C -0.543 4.543 14 H 0.073 0.927 15 C -0.164 4.164 16 N -0.515 5.515 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.220 1.220 20 H -0.204 1.204 21 C -0.242 4.242 22 C -0.225 4.225 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.072 0.928 26 H 0.170 0.830 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.232 0.768 37 H 0.027 0.973 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.518 10.806 5.028 12.015 hybrid contribution -0.545 -0.676 -1.148 1.439 sum -2.063 10.130 3.880 11.043 Atomic orbital electron populations 1.20767 0.89464 1.03056 1.03263 1.21667 0.97494 0.92685 1.07707 1.23831 0.95326 0.97225 0.92247 1.19606 0.92089 0.96159 0.95853 1.21900 1.00382 0.99071 0.95812 1.21923 1.01020 0.93613 1.02413 1.22028 1.00490 0.97698 0.95495 1.18707 0.87528 0.85056 0.78145 1.90875 1.14697 1.87550 1.50472 1.45513 1.11777 1.05150 1.70052 1.20565 0.95707 0.81944 0.95669 1.19348 0.97036 0.90158 0.92810 1.20614 1.01076 1.38679 0.93929 0.92698 1.25544 0.95108 0.94790 1.00968 1.70101 1.16437 1.33290 1.31641 0.85834 0.78736 0.77948 0.80402 1.19220 1.21961 1.20370 1.22965 0.98063 0.98072 1.05103 1.22935 0.96132 1.06547 0.96891 0.89826 0.89541 0.92751 0.82999 0.93810 0.94586 0.93983 0.91329 0.92772 0.91772 0.92109 0.95060 0.95116 0.76809 0.97315 0.90422 0.93628 0.90595 0.90709 0.89858 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 9.84 71.24 0.70 -2.05 16 2 C -0.19 -6.15 5.52 -18.70 -0.10 -6.25 16 3 C -0.07 -1.84 8.19 24.52 0.20 -1.64 16 4 C -0.04 -1.11 0.75 -52.93 -0.04 -1.15 16 5 C -0.11 -4.10 7.64 71.98 0.55 -3.55 16 6 C -0.13 -2.95 8.09 71.98 0.58 -2.37 16 7 C -0.10 -3.38 7.43 71.98 0.53 -2.85 16 8 C 0.52 21.13 5.82 86.57 0.50 21.63 16 9 O -0.55 -24.86 8.26 -4.06 -0.03 -24.90 16 10 N -0.68 -29.25 4.63 -466.72 -2.16 -31.41 16 11 C 0.19 8.87 4.59 86.38 0.40 9.27 16 12 C 0.01 0.33 2.09 -52.93 -0.11 0.22 16 13 C -0.51 -25.53 8.48 25.60 0.22 -25.32 16 14 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 15 C 0.04 1.96 5.24 84.66 0.44 2.40 16 16 N -0.88 -47.34 9.77 21.45 0.21 -47.13 16 17 Si 0.94 41.44 29.54 68.60 2.03 43.47 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 C -0.20 -8.76 9.96 30.62 0.30 -8.45 16 22 C -0.19 -7.53 9.92 30.62 0.30 -7.23 16 23 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 24 H 0.09 1.77 8.10 -2.39 -0.02 1.75 16 25 H 0.05 1.54 6.28 -2.39 -0.01 1.53 16 26 H 0.15 3.03 7.99 -2.91 -0.02 3.00 16 27 H 0.04 1.37 7.91 -2.38 -0.02 1.35 16 28 H 0.03 1.35 7.48 -2.39 -0.02 1.33 16 29 H 0.04 1.81 5.06 -2.39 -0.01 1.79 16 30 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 31 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 33 H 0.06 2.34 4.77 -48.14 -0.23 2.11 16 34 H 0.03 1.16 7.00 -2.39 -0.02 1.14 16 35 H 0.03 0.88 7.76 -2.38 -0.02 0.86 16 36 H 0.40 16.48 6.05 -92.71 -0.56 15.92 16 37 H 0.01 0.42 8.09 -2.39 -0.02 0.40 16 38 H 0.08 4.34 5.95 -2.39 -0.01 4.32 16 39 H 0.25 13.71 8.32 -92.71 -0.77 12.94 16 40 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 43 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -57.29 330.73 4.74 -52.55 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.21 Total: 34.74 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 4.49 Total: -27.32 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -1.95 Total: -78.54 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.03 Total: -24.90 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -57.29 4.74 -52.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.253 kcal (2) G-P(sol) polarization free energy of solvation -57.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds