Wall clock time and date at job start Mon Mar 30 2020 06:32:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.32997 * 119.99820 * 2 1
4 4 C 1.50690 * 120.00273 * 353.18305 * 3 2 1
5 5 C 1.53002 * 109.47375 * 52.29160 * 4 3 2
6 6 C 1.53004 * 109.47476 * 172.29303 * 4 3 2
7 7 C 1.52999 * 109.47203 * 292.29231 * 4 3 2
8 8 C 1.47103 * 120.00134 * 180.02562 * 2 1 3
9 9 O 1.21608 * 120.00080 * 184.77325 * 8 2 1
10 10 N 1.34775 * 119.99753 * 4.76665 * 8 2 1
11 11 C 1.46498 * 120.00068 * 185.02446 * 10 8 2
12 12 C 1.53001 * 109.47558 * 184.94224 * 11 10 8
13 13 C 1.50700 * 115.54894 * 53.76878 * 12 11 10
14 14 H 1.08001 * 119.99421 * 214.16174 * 13 12 11
15 15 C 1.37876 * 120.00172 * 33.88521 * 13 12 11
16 16 N 1.31516 * 119.99846 * 359.10378 * 15 13 12
17 17 Si 1.86799 * 120.00050 * 179.09759 * 15 13 12
18 18 H 1.48503 * 109.46940 * 60.00576 * 17 15 13
19 19 H 1.48496 * 109.46841 * 180.02562 * 17 15 13
20 20 H 1.48493 * 109.47253 * 300.00079 * 17 15 13
21 21 C 1.52995 * 117.49785 * 199.44396 * 12 11 10
22 22 C 1.53003 * 117.49568 * 268.10335 * 12 11 10
23 23 H 1.09001 * 109.47076 * 273.55922 * 1 2 3
24 24 H 1.09001 * 109.46987 * 33.55742 * 1 2 3
25 25 H 1.09000 * 109.46799 * 153.55924 * 1 2 3
26 26 H 1.07998 * 119.99668 * 173.17975 * 3 2 1
27 27 H 1.09003 * 109.47140 * 39.04713 * 5 4 3
28 28 H 1.08999 * 109.47525 * 159.05200 * 5 4 3
29 29 H 1.09006 * 109.47010 * 279.05354 * 5 4 3
30 30 H 1.08997 * 109.46990 * 60.00145 * 6 4 3
31 31 H 1.09000 * 109.47165 * 180.02562 * 6 4 3
32 32 H 1.09002 * 109.46400 * 300.00033 * 6 4 3
33 33 H 1.09000 * 109.47444 * 54.17277 * 7 4 3
34 34 H 1.09002 * 109.47659 * 174.17357 * 7 4 3
35 35 H 1.09004 * 109.47487 * 294.17074 * 7 4 3
36 36 H 0.97001 * 120.00249 * 5.03190 * 10 8 2
37 37 H 1.09008 * 109.47095 * 64.93655 * 11 10 8
38 38 H 1.09005 * 109.47384 * 304.94505 * 11 10 8
39 39 H 0.96998 * 120.00354 * 184.99239 * 16 15 13
40 40 H 1.09007 * 117.49670 * 214.99997 * 21 12 11
41 41 H 1.09004 * 117.50506 * 0.02562 * 21 12 11
42 42 H 1.08997 * 117.50062 * 359.96758 * 22 12 11
43 43 H 1.08991 * 117.49709 * 144.97411 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1719 1.1518 0.0000
4 6 1.4265 2.4522 -0.1549
5 6 0.2955 2.5174 0.8734
6 6 2.3879 3.6211 0.0696
7 6 0.8392 2.5386 -1.5650
8 6 2.2425 -1.2739 -0.0006
9 8 3.4555 -1.2758 0.0871
10 7 1.5721 -2.4390 -0.0981
11 6 2.2924 -3.7100 0.0119
12 6 1.3281 -4.8675 -0.2551
13 6 0.5625 -4.7900 -1.5508
14 1 -0.4484 -5.1664 -1.6039
15 6 1.1505 -4.2334 -2.6668
16 7 2.3731 -3.7541 -2.5959
17 14 0.2106 -4.1601 -4.2794
18 1 -1.0301 -3.3654 -4.0936
19 1 1.0580 -3.5203 -5.3175
20 1 -0.1431 -5.5368 -4.7092
21 6 1.7357 -6.2556 0.2427
22 6 0.6169 -5.4866 0.9498
23 1 -0.3633 0.0638 1.0257
24 1 -0.3633 0.8564 -0.5681
25 1 -0.3633 -0.9202 -0.4576
26 1 3.2462 1.1551 0.1111
27 1 0.6383 2.0949 1.8179
28 1 0.0019 3.5561 1.0253
29 1 -0.5596 1.9476 0.5097
30 1 3.1936 3.5747 -0.6630
31 1 1.8485 4.5617 -0.0420
32 1 2.8062 3.5595 1.0742
33 1 0.2359 1.6525 -1.7623
34 1 0.2147 3.4284 -1.6447
35 1 1.6486 2.5965 -2.2929
36 1 0.6127 -2.4361 -0.2412
37 1 2.7074 -3.8068 1.0152
38 1 3.1004 -3.7342 -0.7194
39 1 2.7603 -3.2978 -3.3593
40 1 1.4501 -7.1129 -0.3670
41 1 2.6906 -6.3443 0.7608
42 1 0.8363 -5.0697 1.9327
43 1 -0.4049 -5.8375 0.8054
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000797565617.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:32:23
Heat of formation + Delta-G solvation = -1.344484 kcal
Electronic energy + Delta-G solvation = -20982.532704 eV
Core-core repulsion = 18028.915296 eV
Total energy + Delta-G solvation = -2953.617408 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-39.32850 -37.80668 -36.54033 -33.15459 -32.35577 -32.01497 -28.13142 -27.26920
-26.53777 -25.89031 -25.26985 -22.16459 -21.21222 -19.24888 -19.19748 -17.78240
-16.65734 -15.89285 -15.13031 -14.82554 -14.51919 -14.32105 -14.08707 -14.04330
-13.60812 -13.25739 -12.81061 -12.61730 -12.24003 -12.00434 -11.92210 -11.73763
-11.58288 -11.45700 -11.36743 -11.04486 -10.98749 -10.74171 -10.63002 -10.51568
-10.36505 -10.22820 -9.66517 -9.06969 -8.88081 -8.80937 -8.63443 -8.25021
-7.72805 -5.97075 -4.17829 1.90921 3.22629 3.30871 3.31215 4.09773
4.25925 4.32054 4.79124 4.85225 4.97792 5.01601 5.33882 5.42339
5.45698 5.51317 5.57275 5.60719 5.71984 5.82356 5.85730 5.88986
5.96191 6.04920 6.07086 6.12087 6.21286 6.31222 6.32815 6.44507
6.56994 6.62379 6.73452 6.79769 6.89708 6.96073 7.15576 7.27089
7.61124 7.73952 7.99947 8.32638 8.67729 8.85726 9.31187 9.45449
10.91923
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.019620 B = 0.005921 C = 0.005189
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1426.805123 B = 4727.538940 C = 5394.559647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.161 4.161
3 C -0.088 4.088
4 C -0.040 4.040
5 C -0.155 4.155
6 C -0.139 4.139
7 C -0.147 4.147
8 C 0.541 3.459
9 O -0.566 6.566
10 N -0.676 5.676
11 C 0.163 3.837
12 C 0.037 3.963
13 C -0.498 4.498
14 H 0.060 0.940
15 C 0.074 3.926
16 N -0.864 5.864
17 Si 0.892 3.108
18 H -0.276 1.276
19 H -0.287 1.287
20 H -0.276 1.276
21 C -0.199 4.199
22 C -0.213 4.213
23 H 0.071 0.929
24 H 0.084 0.916
25 H 0.065 0.935
26 H 0.123 0.877
27 H 0.057 0.943
28 H 0.051 0.949
29 H 0.075 0.925
30 H 0.056 0.944
31 H 0.054 0.946
32 H 0.056 0.944
33 H 0.068 0.932
34 H 0.056 0.944
35 H 0.057 0.943
36 H 0.397 0.603
37 H 0.017 0.983
38 H 0.117 0.883
39 H 0.263 0.737
40 H 0.079 0.921
41 H 0.067 0.933
42 H 0.068 0.932
43 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.666 11.713 4.399 13.354
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.164 4.164
3 C -0.108 4.108
4 C -0.040 4.040
5 C -0.212 4.212
6 C -0.196 4.196
7 C -0.204 4.204
8 C 0.328 3.672
9 O -0.448 6.448
10 N -0.322 5.322
11 C 0.040 3.960
12 C 0.036 3.964
13 C -0.536 4.536
14 H 0.078 0.922
15 C -0.130 4.130
16 N -0.499 5.499
17 Si 0.720 3.280
18 H -0.202 1.202
19 H -0.212 1.212
20 H -0.202 1.202
21 C -0.238 4.238
22 C -0.250 4.250
23 H 0.089 0.911
24 H 0.102 0.898
25 H 0.084 0.916
26 H 0.140 0.860
27 H 0.076 0.924
28 H 0.070 0.930
29 H 0.093 0.907
30 H 0.076 0.924
31 H 0.073 0.927
32 H 0.075 0.925
33 H 0.087 0.913
34 H 0.075 0.925
35 H 0.076 0.924
36 H 0.232 0.768
37 H 0.035 0.965
38 H 0.134 0.866
39 H 0.074 0.926
40 H 0.097 0.903
41 H 0.085 0.915
42 H 0.086 0.914
43 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -3.648 11.694 4.327 12.992
hybrid contribution -0.870 -0.155 -0.931 1.283
sum -4.518 11.539 3.397 12.849
Atomic orbital electron populations
1.21430 0.92069 1.03342 1.02257 1.21578 0.96055 0.93841 1.04951
1.23391 1.00053 0.92172 0.95188 1.19629 0.95267 0.93053 0.96058
1.22402 0.98375 1.01642 0.98810 1.21901 0.98927 0.96950 1.01862
1.22040 1.01069 1.02091 0.95212 1.18174 0.87151 0.84138 0.77786
1.90691 1.13858 1.87776 1.52477 1.45587 1.11593 1.05440 1.69614
1.21050 0.96464 0.80573 0.97907 1.19243 0.95741 0.89439 0.91957
1.20448 0.99360 1.41332 0.92411 0.92218 1.25000 0.94583 0.94842
0.98610 1.69856 1.13303 1.35917 1.30852 0.86653 0.79654 0.78397
0.83310 1.20198 1.21231 1.20177 1.22937 0.96914 0.98960 1.04992
1.22954 0.96454 1.08503 0.97108 0.91062 0.89778 0.91640 0.85951
0.92383 0.92964 0.90668 0.92448 0.92662 0.92519 0.91345 0.92484
0.92396 0.76758 0.96518 0.86582 0.92597 0.90255 0.91492 0.91392
0.90659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.85 7.52 36.00 0.27 -1.58 16
2 C -0.16 -2.75 5.75 -102.85 -0.59 -3.34 16
3 C -0.09 -1.35 7.97 -36.13 -0.29 -1.64 16
4 C -0.04 -0.46 0.75 -155.66 -0.12 -0.58 16
5 C -0.16 -1.59 7.39 37.16 0.27 -1.31 16
6 C -0.14 -1.42 8.32 37.16 0.31 -1.11 16
7 C -0.15 -1.65 8.13 37.16 0.30 -1.35 16
8 C 0.54 11.85 7.74 -12.66 -0.10 11.75 16
9 O -0.57 -14.38 16.21 5.27 0.09 -14.29 16
10 N -0.68 -14.97 4.91 -61.49 -0.30 -15.27 16
11 C 0.16 3.96 4.62 -4.04 -0.02 3.95 16
12 C 0.04 0.88 2.04 -155.66 -0.32 0.56 16
13 C -0.50 -12.72 8.44 -34.44 -0.29 -13.02 16
14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16
15 C 0.07 1.92 5.24 -17.82 -0.09 1.83 16
16 N -0.86 -23.44 10.12 55.43 0.56 -22.88 16
17 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16
18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
21 C -0.20 -4.41 9.96 -26.70 -0.27 -4.67 16
22 C -0.21 -4.46 9.92 -26.69 -0.26 -4.72 16
23 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16
24 H 0.08 1.00 3.06 -51.93 -0.16 0.84 16
25 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16
26 H 0.12 2.06 7.45 -52.49 -0.39 1.67 16
27 H 0.06 0.62 7.96 -51.93 -0.41 0.21 16
28 H 0.05 0.46 7.96 -51.93 -0.41 0.04 16
29 H 0.07 0.73 4.72 -51.93 -0.25 0.49 16
30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16
32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
33 H 0.07 0.82 5.44 -51.93 -0.28 0.53 16
34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.40 8.31 6.05 -40.82 -0.25 8.06 16
37 H 0.02 0.40 8.09 -51.92 -0.42 -0.02 16
38 H 0.12 3.23 5.92 -51.93 -0.31 2.92 16
39 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16
40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16
41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
43 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16
LS Contribution 335.76 15.07 5.06 5.06
Total: -1.00 -28.71 335.76 -7.75 -36.46
By element:
Atomic # 1 Polarization: 17.85 SS G_CDS: -6.95 Total: 10.90 kcal
Atomic # 6 Polarization: -14.04 SS G_CDS: -1.19 Total: -15.23 kcal
Atomic # 7 Polarization: -38.41 SS G_CDS: 0.26 Total: -38.15 kcal
Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.29 kcal
Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -28.71 -7.75 -36.46 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000797565617.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.120 kcal
(2) G-P(sol) polarization free energy of solvation -28.713 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.407 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds