Wall clock time and date at job start Mon Mar 30 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32997 * 119.99820 * 2 1 4 4 C 1.50690 * 120.00273 * 353.18305 * 3 2 1 5 5 C 1.53002 * 109.47375 * 52.29160 * 4 3 2 6 6 C 1.53004 * 109.47476 * 172.29303 * 4 3 2 7 7 C 1.52999 * 109.47203 * 292.29231 * 4 3 2 8 8 C 1.47103 * 120.00134 * 180.02562 * 2 1 3 9 9 O 1.21608 * 120.00080 * 184.77325 * 8 2 1 10 10 N 1.34775 * 119.99753 * 4.76665 * 8 2 1 11 11 C 1.46498 * 120.00068 * 185.02446 * 10 8 2 12 12 C 1.53001 * 109.47558 * 184.94224 * 11 10 8 13 13 C 1.50700 * 115.54894 * 53.76878 * 12 11 10 14 14 H 1.08001 * 119.99421 * 214.16174 * 13 12 11 15 15 C 1.37876 * 120.00172 * 33.88521 * 13 12 11 16 16 N 1.31516 * 119.99846 * 359.10378 * 15 13 12 17 17 Si 1.86799 * 120.00050 * 179.09759 * 15 13 12 18 18 H 1.48503 * 109.46940 * 60.00576 * 17 15 13 19 19 H 1.48496 * 109.46841 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47253 * 300.00079 * 17 15 13 21 21 C 1.52995 * 117.49785 * 199.44396 * 12 11 10 22 22 C 1.53003 * 117.49568 * 268.10335 * 12 11 10 23 23 H 1.09001 * 109.47076 * 273.55922 * 1 2 3 24 24 H 1.09001 * 109.46987 * 33.55742 * 1 2 3 25 25 H 1.09000 * 109.46799 * 153.55924 * 1 2 3 26 26 H 1.07998 * 119.99668 * 173.17975 * 3 2 1 27 27 H 1.09003 * 109.47140 * 39.04713 * 5 4 3 28 28 H 1.08999 * 109.47525 * 159.05200 * 5 4 3 29 29 H 1.09006 * 109.47010 * 279.05354 * 5 4 3 30 30 H 1.08997 * 109.46990 * 60.00145 * 6 4 3 31 31 H 1.09000 * 109.47165 * 180.02562 * 6 4 3 32 32 H 1.09002 * 109.46400 * 300.00033 * 6 4 3 33 33 H 1.09000 * 109.47444 * 54.17277 * 7 4 3 34 34 H 1.09002 * 109.47659 * 174.17357 * 7 4 3 35 35 H 1.09004 * 109.47487 * 294.17074 * 7 4 3 36 36 H 0.97001 * 120.00249 * 5.03190 * 10 8 2 37 37 H 1.09008 * 109.47095 * 64.93655 * 11 10 8 38 38 H 1.09005 * 109.47384 * 304.94505 * 11 10 8 39 39 H 0.96998 * 120.00354 * 184.99239 * 16 15 13 40 40 H 1.09007 * 117.49670 * 214.99997 * 21 12 11 41 41 H 1.09004 * 117.50506 * 0.02562 * 21 12 11 42 42 H 1.08997 * 117.50062 * 359.96758 * 22 12 11 43 43 H 1.08991 * 117.49709 * 144.97411 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4265 2.4522 -0.1549 5 6 0.2955 2.5174 0.8734 6 6 2.3879 3.6211 0.0696 7 6 0.8392 2.5386 -1.5650 8 6 2.2425 -1.2739 -0.0006 9 8 3.4555 -1.2758 0.0871 10 7 1.5721 -2.4390 -0.0981 11 6 2.2924 -3.7100 0.0119 12 6 1.3281 -4.8675 -0.2551 13 6 0.5625 -4.7900 -1.5508 14 1 -0.4484 -5.1664 -1.6039 15 6 1.1505 -4.2334 -2.6668 16 7 2.3731 -3.7541 -2.5959 17 14 0.2106 -4.1601 -4.2794 18 1 -1.0301 -3.3654 -4.0936 19 1 1.0580 -3.5203 -5.3175 20 1 -0.1431 -5.5368 -4.7092 21 6 1.7357 -6.2556 0.2427 22 6 0.6169 -5.4866 0.9498 23 1 -0.3633 0.0638 1.0257 24 1 -0.3633 0.8564 -0.5681 25 1 -0.3633 -0.9202 -0.4576 26 1 3.2462 1.1551 0.1111 27 1 0.6383 2.0949 1.8179 28 1 0.0019 3.5561 1.0253 29 1 -0.5596 1.9476 0.5097 30 1 3.1936 3.5747 -0.6630 31 1 1.8485 4.5617 -0.0420 32 1 2.8062 3.5595 1.0742 33 1 0.2359 1.6525 -1.7623 34 1 0.2147 3.4284 -1.6447 35 1 1.6486 2.5965 -2.2929 36 1 0.6127 -2.4361 -0.2412 37 1 2.7074 -3.8068 1.0152 38 1 3.1004 -3.7342 -0.7194 39 1 2.7603 -3.2978 -3.3593 40 1 1.4501 -7.1129 -0.3670 41 1 2.6906 -6.3443 0.7608 42 1 0.8363 -5.0697 1.9327 43 1 -0.4049 -5.8375 0.8054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:23 Heat of formation + Delta-G solvation = -1.344484 kcal Electronic energy + Delta-G solvation = -20982.532704 eV Core-core repulsion = 18028.915296 eV Total energy + Delta-G solvation = -2953.617408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.32850 -37.80668 -36.54033 -33.15459 -32.35577 -32.01497 -28.13142 -27.26920 -26.53777 -25.89031 -25.26985 -22.16459 -21.21222 -19.24888 -19.19748 -17.78240 -16.65734 -15.89285 -15.13031 -14.82554 -14.51919 -14.32105 -14.08707 -14.04330 -13.60812 -13.25739 -12.81061 -12.61730 -12.24003 -12.00434 -11.92210 -11.73763 -11.58288 -11.45700 -11.36743 -11.04486 -10.98749 -10.74171 -10.63002 -10.51568 -10.36505 -10.22820 -9.66517 -9.06969 -8.88081 -8.80937 -8.63443 -8.25021 -7.72805 -5.97075 -4.17829 1.90921 3.22629 3.30871 3.31215 4.09773 4.25925 4.32054 4.79124 4.85225 4.97792 5.01601 5.33882 5.42339 5.45698 5.51317 5.57275 5.60719 5.71984 5.82356 5.85730 5.88986 5.96191 6.04920 6.07086 6.12087 6.21286 6.31222 6.32815 6.44507 6.56994 6.62379 6.73452 6.79769 6.89708 6.96073 7.15576 7.27089 7.61124 7.73952 7.99947 8.32638 8.67729 8.85726 9.31187 9.45449 10.91923 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.005921 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.805123 B = 4727.538940 C = 5394.559647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.161 4.161 3 C -0.088 4.088 4 C -0.040 4.040 5 C -0.155 4.155 6 C -0.139 4.139 7 C -0.147 4.147 8 C 0.541 3.459 9 O -0.566 6.566 10 N -0.676 5.676 11 C 0.163 3.837 12 C 0.037 3.963 13 C -0.498 4.498 14 H 0.060 0.940 15 C 0.074 3.926 16 N -0.864 5.864 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.199 4.199 22 C -0.213 4.213 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.397 0.603 37 H 0.017 0.983 38 H 0.117 0.883 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.666 11.713 4.399 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C -0.108 4.108 4 C -0.040 4.040 5 C -0.212 4.212 6 C -0.196 4.196 7 C -0.204 4.204 8 C 0.328 3.672 9 O -0.448 6.448 10 N -0.322 5.322 11 C 0.040 3.960 12 C 0.036 3.964 13 C -0.536 4.536 14 H 0.078 0.922 15 C -0.130 4.130 16 N -0.499 5.499 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.238 4.238 22 C -0.250 4.250 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.232 0.768 37 H 0.035 0.965 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.648 11.694 4.327 12.992 hybrid contribution -0.870 -0.155 -0.931 1.283 sum -4.518 11.539 3.397 12.849 Atomic orbital electron populations 1.21430 0.92069 1.03342 1.02257 1.21578 0.96055 0.93841 1.04951 1.23391 1.00053 0.92172 0.95188 1.19629 0.95267 0.93053 0.96058 1.22402 0.98375 1.01642 0.98810 1.21901 0.98927 0.96950 1.01862 1.22040 1.01069 1.02091 0.95212 1.18174 0.87151 0.84138 0.77786 1.90691 1.13858 1.87776 1.52477 1.45587 1.11593 1.05440 1.69614 1.21050 0.96464 0.80573 0.97907 1.19243 0.95741 0.89439 0.91957 1.20448 0.99360 1.41332 0.92411 0.92218 1.25000 0.94583 0.94842 0.98610 1.69856 1.13303 1.35917 1.30852 0.86653 0.79654 0.78397 0.83310 1.20198 1.21231 1.20177 1.22937 0.96914 0.98960 1.04992 1.22954 0.96454 1.08503 0.97108 0.91062 0.89778 0.91640 0.85951 0.92383 0.92964 0.90668 0.92448 0.92662 0.92519 0.91345 0.92484 0.92396 0.76758 0.96518 0.86582 0.92597 0.90255 0.91492 0.91392 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 7.52 36.00 0.27 -1.58 16 2 C -0.16 -2.75 5.75 -102.85 -0.59 -3.34 16 3 C -0.09 -1.35 7.97 -36.13 -0.29 -1.64 16 4 C -0.04 -0.46 0.75 -155.66 -0.12 -0.58 16 5 C -0.16 -1.59 7.39 37.16 0.27 -1.31 16 6 C -0.14 -1.42 8.32 37.16 0.31 -1.11 16 7 C -0.15 -1.65 8.13 37.16 0.30 -1.35 16 8 C 0.54 11.85 7.74 -12.66 -0.10 11.75 16 9 O -0.57 -14.38 16.21 5.27 0.09 -14.29 16 10 N -0.68 -14.97 4.91 -61.49 -0.30 -15.27 16 11 C 0.16 3.96 4.62 -4.04 -0.02 3.95 16 12 C 0.04 0.88 2.04 -155.66 -0.32 0.56 16 13 C -0.50 -12.72 8.44 -34.44 -0.29 -13.02 16 14 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 15 C 0.07 1.92 5.24 -17.82 -0.09 1.83 16 16 N -0.86 -23.44 10.12 55.43 0.56 -22.88 16 17 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.20 -4.41 9.96 -26.70 -0.27 -4.67 16 22 C -0.21 -4.46 9.92 -26.69 -0.26 -4.72 16 23 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16 24 H 0.08 1.00 3.06 -51.93 -0.16 0.84 16 25 H 0.06 0.97 6.34 -51.93 -0.33 0.64 16 26 H 0.12 2.06 7.45 -52.49 -0.39 1.67 16 27 H 0.06 0.62 7.96 -51.93 -0.41 0.21 16 28 H 0.05 0.46 7.96 -51.93 -0.41 0.04 16 29 H 0.07 0.73 4.72 -51.93 -0.25 0.49 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.82 5.44 -51.93 -0.28 0.53 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 8.31 6.05 -40.82 -0.25 8.06 16 37 H 0.02 0.40 8.09 -51.92 -0.42 -0.02 16 38 H 0.12 3.23 5.92 -51.93 -0.31 2.92 16 39 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -28.71 335.76 -7.75 -36.46 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.95 Total: 10.90 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -1.19 Total: -15.23 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.26 Total: -38.15 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.09 Total: -14.29 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.71 -7.75 -36.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.120 kcal (2) G-P(sol) polarization free energy of solvation -28.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds