Wall clock time and date at job start Mon Mar 30 2020 06:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32997 * 119.99820 * 2 1 4 4 C 1.50690 * 120.00273 * 353.18305 * 3 2 1 5 5 C 1.53002 * 109.47375 * 52.29160 * 4 3 2 6 6 C 1.53004 * 109.47476 * 172.29303 * 4 3 2 7 7 C 1.52999 * 109.47203 * 292.29231 * 4 3 2 8 8 C 1.47103 * 120.00134 * 180.02562 * 2 1 3 9 9 O 1.21608 * 120.00080 * 184.77325 * 8 2 1 10 10 N 1.34775 * 119.99753 * 4.76665 * 8 2 1 11 11 C 1.46498 * 120.00068 * 185.02446 * 10 8 2 12 12 C 1.53001 * 109.47558 * 184.94224 * 11 10 8 13 13 C 1.50700 * 115.54894 * 53.76878 * 12 11 10 14 14 H 1.08001 * 119.99421 * 214.16174 * 13 12 11 15 15 C 1.37876 * 120.00172 * 33.88521 * 13 12 11 16 16 N 1.31516 * 119.99846 * 359.10378 * 15 13 12 17 17 Si 1.86799 * 120.00050 * 179.09759 * 15 13 12 18 18 H 1.48503 * 109.46940 * 60.00576 * 17 15 13 19 19 H 1.48496 * 109.46841 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47253 * 300.00079 * 17 15 13 21 21 C 1.52995 * 117.49785 * 199.44396 * 12 11 10 22 22 C 1.53003 * 117.49568 * 268.10335 * 12 11 10 23 23 H 1.09001 * 109.47076 * 273.55922 * 1 2 3 24 24 H 1.09001 * 109.46987 * 33.55742 * 1 2 3 25 25 H 1.09000 * 109.46799 * 153.55924 * 1 2 3 26 26 H 1.07998 * 119.99668 * 173.17975 * 3 2 1 27 27 H 1.09003 * 109.47140 * 39.04713 * 5 4 3 28 28 H 1.08999 * 109.47525 * 159.05200 * 5 4 3 29 29 H 1.09006 * 109.47010 * 279.05354 * 5 4 3 30 30 H 1.08997 * 109.46990 * 60.00145 * 6 4 3 31 31 H 1.09000 * 109.47165 * 180.02562 * 6 4 3 32 32 H 1.09002 * 109.46400 * 300.00033 * 6 4 3 33 33 H 1.09000 * 109.47444 * 54.17277 * 7 4 3 34 34 H 1.09002 * 109.47659 * 174.17357 * 7 4 3 35 35 H 1.09004 * 109.47487 * 294.17074 * 7 4 3 36 36 H 0.97001 * 120.00249 * 5.03190 * 10 8 2 37 37 H 1.09008 * 109.47095 * 64.93655 * 11 10 8 38 38 H 1.09005 * 109.47384 * 304.94505 * 11 10 8 39 39 H 0.96998 * 120.00354 * 184.99239 * 16 15 13 40 40 H 1.09007 * 117.49670 * 214.99997 * 21 12 11 41 41 H 1.09004 * 117.50506 * 0.02562 * 21 12 11 42 42 H 1.08997 * 117.50062 * 359.96758 * 22 12 11 43 43 H 1.08991 * 117.49709 * 144.97411 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4265 2.4522 -0.1549 5 6 0.2955 2.5174 0.8734 6 6 2.3879 3.6211 0.0696 7 6 0.8392 2.5386 -1.5650 8 6 2.2425 -1.2739 -0.0006 9 8 3.4555 -1.2758 0.0871 10 7 1.5721 -2.4390 -0.0981 11 6 2.2924 -3.7100 0.0119 12 6 1.3281 -4.8675 -0.2551 13 6 0.5625 -4.7900 -1.5508 14 1 -0.4484 -5.1664 -1.6039 15 6 1.1505 -4.2334 -2.6668 16 7 2.3731 -3.7541 -2.5959 17 14 0.2106 -4.1601 -4.2794 18 1 -1.0301 -3.3654 -4.0936 19 1 1.0580 -3.5203 -5.3175 20 1 -0.1431 -5.5368 -4.7092 21 6 1.7357 -6.2556 0.2427 22 6 0.6169 -5.4866 0.9498 23 1 -0.3633 0.0638 1.0257 24 1 -0.3633 0.8564 -0.5681 25 1 -0.3633 -0.9202 -0.4576 26 1 3.2462 1.1551 0.1111 27 1 0.6383 2.0949 1.8179 28 1 0.0019 3.5561 1.0253 29 1 -0.5596 1.9476 0.5097 30 1 3.1936 3.5747 -0.6630 31 1 1.8485 4.5617 -0.0420 32 1 2.8062 3.5595 1.0742 33 1 0.2359 1.6525 -1.7623 34 1 0.2147 3.4284 -1.6447 35 1 1.6486 2.5965 -2.2929 36 1 0.6127 -2.4361 -0.2412 37 1 2.7074 -3.8068 1.0152 38 1 3.1004 -3.7342 -0.7194 39 1 2.7603 -3.2978 -3.3593 40 1 1.4501 -7.1129 -0.3670 41 1 2.6906 -6.3443 0.7608 42 1 0.8363 -5.0697 1.9327 43 1 -0.4049 -5.8375 0.8054 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797565617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:23 Heat of formation + Delta-G solvation = -16.872347 kcal Electronic energy + Delta-G solvation = -20983.206043 eV Core-core repulsion = 18028.915296 eV Total energy + Delta-G solvation = -2954.290746 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83594 -39.15719 -38.29378 -34.89231 -34.15993 -33.45502 -29.14939 -28.10813 -28.09054 -27.45171 -26.89314 -23.62919 -22.93424 -21.13549 -20.56595 -19.19754 -18.23068 -17.54416 -16.78760 -16.66593 -15.97541 -15.77281 -15.36510 -15.11117 -14.94299 -14.77961 -14.24827 -14.19070 -13.58004 -13.38113 -13.19741 -12.95151 -12.85721 -12.82770 -12.63216 -12.59306 -12.32811 -12.31537 -12.04713 -11.86524 -11.76267 -11.52948 -11.32373 -10.96330 -10.70845 -10.52574 -10.13538 -9.96718 -9.53411 -7.93731 -6.20417 0.53531 1.42146 1.44981 1.51575 2.40917 2.45274 2.65255 3.08441 3.63450 3.78069 3.90686 4.07301 4.12402 4.25334 4.27082 4.46198 4.52718 4.66815 4.73126 4.77849 4.80472 4.82357 4.85623 4.93126 4.95200 5.02626 5.06451 5.09623 5.13030 5.24133 5.28133 5.30735 5.46306 5.50556 5.52098 5.57856 5.59867 5.76706 5.93490 5.97746 6.36576 6.78792 7.01988 7.44915 7.58481 8.91967 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.005921 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.805123 B = 4727.538940 C = 5394.559647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.183 4.183 3 C -0.069 4.069 4 C -0.038 4.038 5 C -0.153 4.153 6 C -0.139 4.139 7 C -0.147 4.147 8 C 0.531 3.469 9 O -0.613 6.613 10 N -0.672 5.672 11 C 0.173 3.827 12 C 0.006 3.994 13 C -0.503 4.503 14 H 0.060 0.940 15 C 0.033 3.967 16 N -0.890 5.890 17 Si 0.948 3.052 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.275 1.275 21 C -0.201 4.201 22 C -0.184 4.184 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.403 0.597 37 H 0.014 0.986 38 H 0.078 0.922 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.080 13.193 4.779 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.186 4.186 3 C -0.089 4.089 4 C -0.038 4.038 5 C -0.210 4.210 6 C -0.196 4.196 7 C -0.204 4.204 8 C 0.320 3.680 9 O -0.498 6.498 10 N -0.318 5.318 11 C 0.049 3.951 12 C 0.005 3.995 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.168 4.168 16 N -0.527 5.527 17 Si 0.774 3.226 18 H -0.188 1.188 19 H -0.221 1.221 20 H -0.200 1.200 21 C -0.239 4.239 22 C -0.221 4.221 23 H 0.108 0.892 24 H 0.125 0.875 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.240 0.760 37 H 0.032 0.968 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.106 13.165 4.717 15.259 hybrid contribution -0.039 -0.617 -1.010 1.184 sum -6.145 12.547 3.707 14.455 Atomic orbital electron populations 1.21463 0.89285 1.03682 1.03754 1.21492 0.97766 0.91621 1.07709 1.23689 0.99304 0.93827 0.92115 1.19729 0.95840 0.91078 0.97165 1.22382 0.97617 1.03270 0.97728 1.21910 0.98696 0.97334 1.01660 1.22053 1.01026 1.03057 0.94273 1.19020 0.86938 0.85596 0.76418 1.90651 1.16015 1.88564 1.54614 1.45520 1.11735 1.05040 1.69523 1.20725 0.95940 0.82069 0.96380 1.19290 0.97058 0.90076 0.93040 1.20664 0.99351 1.40850 0.93170 0.92153 1.25627 0.95161 0.94771 1.01284 1.70074 1.14701 1.36997 1.30946 0.85766 0.78794 0.78327 0.79710 1.18753 1.22096 1.20037 1.22959 0.98019 0.97857 1.05114 1.22948 0.96523 1.06127 0.96512 0.89159 0.87480 0.92930 0.88266 0.93075 0.90695 0.89955 0.93155 0.90292 0.92564 0.92069 0.89713 0.93365 0.76021 0.96777 0.90460 0.93581 0.90388 0.90766 0.89760 0.89505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 7.52 71.24 0.54 -2.71 16 2 C -0.18 -6.22 5.75 -18.70 -0.11 -6.33 16 3 C -0.07 -2.10 7.97 24.52 0.20 -1.91 16 4 C -0.04 -0.80 0.75 -52.93 -0.04 -0.84 16 5 C -0.15 -2.60 7.39 71.98 0.53 -2.07 16 6 C -0.14 -2.51 8.32 71.98 0.60 -1.91 16 7 C -0.15 -2.91 8.13 71.98 0.59 -2.32 16 8 C 0.53 24.02 7.74 86.57 0.67 24.69 16 9 O -0.61 -32.75 16.21 -4.06 -0.07 -32.82 16 10 N -0.67 -30.43 4.91 -466.70 -2.29 -32.72 16 11 C 0.17 8.65 4.62 86.38 0.40 9.04 16 12 C 0.01 0.29 2.04 -52.93 -0.11 0.18 16 13 C -0.50 -25.55 8.44 25.60 0.22 -25.33 16 14 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 15 C 0.03 1.72 5.24 84.65 0.44 2.17 16 16 N -0.89 -49.78 10.12 21.45 0.22 -49.57 16 17 Si 0.95 41.57 29.54 68.60 2.03 43.59 16 18 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 19 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 C -0.20 -8.73 9.96 30.62 0.30 -8.43 16 22 C -0.18 -7.37 9.92 30.62 0.30 -7.06 16 23 H 0.09 1.95 7.48 -2.39 -0.02 1.94 16 24 H 0.11 2.24 3.06 -2.39 -0.01 2.24 16 25 H 0.05 1.49 6.34 -2.39 -0.02 1.47 16 26 H 0.10 3.46 7.45 -2.91 -0.02 3.44 16 27 H 0.05 0.95 7.96 -2.39 -0.02 0.94 16 28 H 0.07 0.97 7.96 -2.39 -0.02 0.95 16 29 H 0.08 1.28 4.72 -2.38 -0.01 1.27 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.31 5.44 -2.39 -0.01 1.29 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.40 16.98 6.05 -92.71 -0.56 16.42 16 37 H 0.01 0.69 8.09 -2.38 -0.02 0.67 16 38 H 0.08 4.52 5.92 -2.38 -0.01 4.51 16 39 H 0.25 14.18 8.32 -92.71 -0.77 13.41 16 40 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 41 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 42 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -63.55 335.76 4.85 -58.70 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.43 Total: 35.64 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 4.53 Total: -22.83 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -2.08 Total: -82.28 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.07 Total: -32.82 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -63.55 4.85 -58.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.828 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds