Wall clock time and date at job start Mon Mar 30 2020 06:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99821 * 2 1 4 4 N 1.46495 * 109.47330 * 123.09984 * 3 2 1 5 5 C 1.46506 * 120.00581 * 83.91163 * 4 3 2 6 6 C 1.50694 * 109.47320 * 90.00066 * 5 4 3 7 7 H 1.08009 * 119.99880 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00464 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99511 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00254 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47146 * 59.99748 * 10 8 6 12 12 H 1.48507 * 109.47067 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47339 * 299.99938 * 10 8 6 14 14 C 1.34778 * 119.99955 * 264.19130 * 4 3 2 15 15 O 1.21288 * 119.99912 * 187.96616 * 14 4 3 16 16 C 1.50702 * 120.00137 * 7.96042 * 14 4 3 17 17 C 1.53002 * 115.54993 * 279.43540 * 16 14 4 18 18 C 1.52996 * 109.46795 * 305.69508 * 17 16 14 19 19 C 1.53002 * 109.46814 * 185.19659 * 18 17 16 20 20 C 1.53005 * 109.47277 * 184.81696 * 19 18 17 21 21 C 1.52996 * 117.49778 * 133.75840 * 16 14 4 22 22 C 1.53005 * 117.49471 * 65.10172 * 16 14 4 23 23 H 1.08002 * 120.00210 * 176.16163 * 1 2 3 24 24 H 1.08002 * 119.99993 * 356.15750 * 1 2 3 25 25 H 1.07996 * 120.00230 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47399 * 3.09666 * 3 2 1 27 27 H 1.09008 * 109.47365 * 243.09638 * 3 2 1 28 28 H 1.08999 * 109.47297 * 210.00715 * 5 4 3 29 29 H 1.09006 * 109.46246 * 330.00261 * 5 4 3 30 30 H 0.97001 * 119.99583 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47154 * 65.69837 * 17 16 14 32 32 H 1.08998 * 109.46756 * 185.69473 * 17 16 14 33 33 H 1.08998 * 109.47179 * 305.19201 * 18 17 16 34 34 H 1.08996 * 109.47511 * 65.20124 * 18 17 16 35 35 H 1.09000 * 109.47078 * 304.81938 * 19 18 17 36 36 H 1.08997 * 109.47323 * 64.81693 * 19 18 17 37 37 H 1.08997 * 109.46567 * 304.89995 * 20 19 18 38 38 H 1.08997 * 109.46791 * 64.89751 * 20 19 18 39 39 H 1.08992 * 109.46946 * 184.90195 * 20 19 18 40 40 H 1.08999 * 117.50226 * 0.02562 * 21 16 14 41 41 H 1.09004 * 117.49827 * 145.02400 * 21 16 14 42 42 H 1.08998 * 117.49994 * 214.98048 * 22 16 14 43 43 H 1.08999 * 117.49705 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9608 1.3510 1.1570 5 6 4.2826 0.7234 1.0843 6 6 5.2884 1.7272 0.5826 7 1 4.9745 2.7323 0.3423 8 6 6.6093 1.3626 0.4302 9 7 6.9916 0.1388 0.7233 10 14 7.8561 2.6071 -0.1910 11 1 7.9080 3.7628 0.7400 12 1 9.1960 1.9709 -0.2648 13 1 7.4557 3.0771 -1.5415 14 6 2.5682 1.9656 2.2904 15 8 3.3584 2.1311 3.1955 16 6 1.1474 2.4474 2.4330 17 6 0.8330 3.7842 1.7585 18 6 1.8154 4.8480 2.2523 19 6 1.4221 6.2108 1.6787 20 6 2.4711 7.2524 2.0736 21 6 0.4212 2.1281 3.7413 22 6 0.0418 1.3899 2.4551 23 1 -0.5400 -0.9332 -0.0626 24 1 -0.5400 0.9332 0.0627 25 1 1.8500 -0.9353 -0.0004 26 1 1.3564 2.1329 0.0555 27 1 2.6479 1.3873 -0.9165 28 1 4.5764 0.3791 2.0759 29 1 4.2447 -0.1254 0.4014 30 1 7.9210 -0.1176 0.6165 31 1 0.9266 3.6767 0.6778 32 1 -0.1845 4.0860 2.0068 33 1 1.7880 4.8905 3.3411 34 1 2.8229 4.5927 1.9238 35 1 1.3663 6.1453 0.5921 36 1 0.4505 6.5053 2.0753 37 1 2.5893 7.2561 3.1572 38 1 3.4234 7.0046 1.6051 39 1 2.1476 8.2383 1.7400 40 1 0.9712 1.5700 4.4990 41 1 -0.2809 2.8703 4.1213 42 1 -0.9097 1.6467 1.9895 43 1 0.3422 0.3459 2.3660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820223800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:06 Heat of formation + Delta-G solvation = -7.400175 kcal Electronic energy + Delta-G solvation = -21205.185435 eV Core-core repulsion = 18251.305433 eV Total energy + Delta-G solvation = -2953.880002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.84124 -36.65359 -35.62613 -34.80168 -33.13183 -32.00336 -29.89213 -27.67237 -25.61999 -24.61798 -23.27699 -22.40879 -21.13344 -20.82986 -19.51751 -17.98231 -16.41806 -16.20214 -15.57780 -15.23186 -14.95686 -14.63859 -14.27357 -13.89871 -13.69459 -13.30025 -12.94757 -12.66483 -12.58759 -12.13253 -11.90606 -11.65283 -11.43703 -11.36824 -11.23057 -11.04325 -11.03004 -10.87520 -10.82023 -10.54839 -10.38996 -10.14971 -10.02978 -9.65596 -9.62513 -9.09441 -8.74201 -8.40448 -7.61870 -6.01559 -4.05646 2.46414 3.33339 3.37695 3.39417 3.45804 3.80874 4.11015 4.47388 4.70108 4.96951 5.03163 5.13202 5.18238 5.25952 5.27238 5.32594 5.37088 5.40583 5.64298 5.64969 5.77360 5.80511 5.89532 5.93011 6.01685 6.04018 6.07103 6.10391 6.21482 6.27374 6.29811 6.31138 6.48377 6.62405 6.82328 6.95068 7.12197 7.44756 7.59297 7.95088 8.26649 8.48280 8.93855 9.16315 9.59231 11.06565 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.007564 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.164579 B = 3701.047744 C = 4984.780113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.134 3.866 4 N -0.590 5.590 5 C 0.247 3.753 6 C -0.522 4.522 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.544 3.456 15 O -0.534 6.534 16 C -0.150 4.150 17 C -0.073 4.073 18 C -0.121 4.121 19 C -0.121 4.121 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.162 4.162 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.065 5.502 -0.547 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.175 4.175 3 C 0.010 3.990 4 N -0.321 5.321 5 C 0.128 3.872 6 C -0.561 4.561 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.330 3.670 15 O -0.410 6.410 16 C -0.153 4.153 17 C -0.110 4.110 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.210 4.210 21 C -0.191 4.191 22 C -0.199 4.199 23 H 0.111 0.889 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.422 5.464 -0.067 16.361 hybrid contribution 0.801 0.495 -0.435 1.037 sum -14.620 5.959 -0.502 15.796 Atomic orbital electron populations 1.23795 0.95761 1.01451 1.02325 1.23492 0.96103 0.99806 0.98145 1.20693 0.92850 0.94570 0.90858 1.48145 1.17717 1.54886 1.11354 1.19261 0.76736 0.92837 0.98324 1.21383 0.93049 0.97826 1.43820 0.92508 1.24925 0.98232 0.95390 0.95554 1.69924 1.17312 1.17676 1.48655 0.86587 0.80300 0.81494 0.79226 1.20185 1.21201 1.20266 1.19278 0.87053 0.78076 0.82600 1.90672 1.54087 1.55606 1.40669 1.21534 0.92645 0.97667 1.03453 1.21131 0.99159 0.91231 0.99516 1.21587 0.99920 0.93266 1.01037 1.21510 0.98566 0.95115 1.00649 1.21768 0.99500 0.98222 1.01549 1.22977 1.01975 1.03042 0.91096 1.23289 0.98039 0.97662 1.00938 0.88901 0.88528 0.87334 0.90495 0.89548 0.94260 0.95031 0.92727 0.91255 0.91531 0.91685 0.91162 0.92225 0.92510 0.92770 0.92500 0.93176 0.88516 0.88591 0.88463 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 11.61 29.02 0.34 -1.89 16 2 C -0.16 -2.24 8.86 -36.03 -0.32 -2.56 16 3 C 0.13 2.23 5.46 -5.20 -0.03 2.20 16 4 N -0.59 -12.60 2.44 -176.43 -0.43 -13.03 16 5 C 0.25 6.52 5.12 -5.19 -0.03 6.49 16 6 C -0.52 -14.91 9.39 -34.44 -0.32 -15.24 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 10 Si 0.90 22.13 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.54 11.54 5.83 -10.98 -0.06 11.47 16 15 O -0.53 -13.85 16.68 5.55 0.09 -13.76 16 16 C -0.15 -2.32 0.90 -155.66 -0.14 -2.46 16 17 C -0.07 -0.97 4.95 -26.73 -0.13 -1.10 16 18 C -0.12 -1.77 4.86 -26.73 -0.13 -1.90 16 19 C -0.12 -1.44 5.93 -26.73 -0.16 -1.60 16 20 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 21 C -0.15 -2.11 9.85 -26.70 -0.26 -2.37 16 22 C -0.16 -2.06 6.79 -26.69 -0.18 -2.24 16 23 H 0.09 0.93 8.06 -52.49 -0.42 0.51 16 24 H 0.10 0.98 6.57 -52.49 -0.34 0.64 16 25 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.08 1.11 4.32 -51.93 -0.22 0.89 16 27 H 0.09 1.50 8.12 -51.92 -0.42 1.08 16 28 H 0.04 1.17 7.54 -51.93 -0.39 0.78 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.07 0.89 6.12 -51.93 -0.32 0.57 16 32 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.29 7.62 -51.93 -0.40 0.89 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.10 0.98 7.47 -51.93 -0.39 0.60 16 43 H 0.10 1.40 6.50 -51.93 -0.34 1.06 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -32.17 345.96 -8.00 -40.17 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.43 Total: 1.41 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.16 Total: -10.99 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.31 Total: -39.15 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.09 Total: -13.76 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.17 -8.00 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820223800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.771 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds