Wall clock time and date at job start Mon Mar 30 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99821 * 2 1 4 4 N 1.46495 * 109.47330 * 123.09984 * 3 2 1 5 5 C 1.46506 * 120.00581 * 83.91163 * 4 3 2 6 6 C 1.50694 * 109.47320 * 90.00066 * 5 4 3 7 7 H 1.08009 * 119.99880 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00464 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99511 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00254 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47146 * 59.99748 * 10 8 6 12 12 H 1.48507 * 109.47067 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47339 * 299.99938 * 10 8 6 14 14 C 1.34778 * 119.99955 * 264.19130 * 4 3 2 15 15 O 1.21288 * 119.99912 * 187.96616 * 14 4 3 16 16 C 1.50702 * 120.00137 * 7.96042 * 14 4 3 17 17 C 1.53002 * 115.54993 * 279.43540 * 16 14 4 18 18 C 1.52996 * 109.46795 * 305.69508 * 17 16 14 19 19 C 1.53002 * 109.46814 * 185.19659 * 18 17 16 20 20 C 1.53005 * 109.47277 * 184.81696 * 19 18 17 21 21 C 1.52996 * 117.49778 * 133.75840 * 16 14 4 22 22 C 1.53005 * 117.49471 * 65.10172 * 16 14 4 23 23 H 1.08002 * 120.00210 * 176.16163 * 1 2 3 24 24 H 1.08002 * 119.99993 * 356.15750 * 1 2 3 25 25 H 1.07996 * 120.00230 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.47399 * 3.09666 * 3 2 1 27 27 H 1.09008 * 109.47365 * 243.09638 * 3 2 1 28 28 H 1.08999 * 109.47297 * 210.00715 * 5 4 3 29 29 H 1.09006 * 109.46246 * 330.00261 * 5 4 3 30 30 H 0.97001 * 119.99583 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47154 * 65.69837 * 17 16 14 32 32 H 1.08998 * 109.46756 * 185.69473 * 17 16 14 33 33 H 1.08998 * 109.47179 * 305.19201 * 18 17 16 34 34 H 1.08996 * 109.47511 * 65.20124 * 18 17 16 35 35 H 1.09000 * 109.47078 * 304.81938 * 19 18 17 36 36 H 1.08997 * 109.47323 * 64.81693 * 19 18 17 37 37 H 1.08997 * 109.46567 * 304.89995 * 20 19 18 38 38 H 1.08997 * 109.46791 * 64.89751 * 20 19 18 39 39 H 1.08992 * 109.46946 * 184.90195 * 20 19 18 40 40 H 1.08999 * 117.50226 * 0.02562 * 21 16 14 41 41 H 1.09004 * 117.49827 * 145.02400 * 21 16 14 42 42 H 1.08998 * 117.49994 * 214.98048 * 22 16 14 43 43 H 1.08999 * 117.49705 * 359.97438 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9608 1.3510 1.1570 5 6 4.2826 0.7234 1.0843 6 6 5.2884 1.7272 0.5826 7 1 4.9745 2.7323 0.3423 8 6 6.6093 1.3626 0.4302 9 7 6.9916 0.1388 0.7233 10 14 7.8561 2.6071 -0.1910 11 1 7.9080 3.7628 0.7400 12 1 9.1960 1.9709 -0.2648 13 1 7.4557 3.0771 -1.5415 14 6 2.5682 1.9656 2.2904 15 8 3.3584 2.1311 3.1955 16 6 1.1474 2.4474 2.4330 17 6 0.8330 3.7842 1.7585 18 6 1.8154 4.8480 2.2523 19 6 1.4221 6.2108 1.6787 20 6 2.4711 7.2524 2.0736 21 6 0.4212 2.1281 3.7413 22 6 0.0418 1.3899 2.4551 23 1 -0.5400 -0.9332 -0.0626 24 1 -0.5400 0.9332 0.0627 25 1 1.8500 -0.9353 -0.0004 26 1 1.3564 2.1329 0.0555 27 1 2.6479 1.3873 -0.9165 28 1 4.5764 0.3791 2.0759 29 1 4.2447 -0.1254 0.4014 30 1 7.9210 -0.1176 0.6165 31 1 0.9266 3.6767 0.6778 32 1 -0.1845 4.0860 2.0068 33 1 1.7880 4.8905 3.3411 34 1 2.8229 4.5927 1.9238 35 1 1.3663 6.1453 0.5921 36 1 0.4505 6.5053 2.0753 37 1 2.5893 7.2561 3.1572 38 1 3.4234 7.0046 1.6051 39 1 2.1476 8.2383 1.7400 40 1 0.9712 1.5700 4.4990 41 1 -0.2809 2.8703 4.1213 42 1 -0.9097 1.6467 1.9895 43 1 0.3422 0.3459 2.3660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820223800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:05 Heat of formation + Delta-G solvation = -26.272694 kcal Electronic energy + Delta-G solvation = -21206.003809 eV Core-core repulsion = 18251.305433 eV Total energy + Delta-G solvation = -2954.698376 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31645 -38.03933 -37.21658 -35.86314 -35.04772 -33.64954 -30.93480 -29.67210 -27.00787 -26.09865 -24.91034 -23.48910 -22.61110 -21.88499 -20.67561 -19.50773 -18.61350 -17.55599 -17.26838 -16.59999 -16.43133 -16.00057 -15.67852 -15.33296 -14.83421 -14.68509 -14.23668 -14.01169 -13.94628 -13.83498 -13.48639 -13.11463 -13.01052 -12.75811 -12.65265 -12.51437 -12.28882 -12.23740 -12.12203 -12.05742 -11.92360 -11.73005 -11.46257 -11.14360 -10.79168 -10.67052 -10.43654 -10.13746 -9.43492 -8.25153 -6.39828 1.31517 1.36496 1.39514 1.44132 1.83128 2.31392 2.46999 2.83227 3.03653 3.59084 3.77655 3.92058 3.99642 4.10538 4.14166 4.22356 4.24831 4.37229 4.56974 4.59349 4.70742 4.77383 4.82034 4.86816 4.91987 4.98848 5.02443 5.05387 5.10704 5.13090 5.20829 5.21496 5.28349 5.30295 5.42623 5.51360 5.54954 5.79646 5.84401 5.90775 6.03971 6.67206 6.82498 7.25876 7.50696 8.81752 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.007564 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.164579 B = 3701.047744 C = 4984.780113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.195 4.195 3 C 0.134 3.866 4 N -0.595 5.595 5 C 0.264 3.736 6 C -0.539 4.539 7 H 0.049 0.951 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.965 3.035 11 H -0.280 1.280 12 H -0.275 1.275 13 H -0.259 1.259 14 C 0.534 3.466 15 O -0.600 6.600 16 C -0.166 4.166 17 C -0.065 4.065 18 C -0.119 4.119 19 C -0.114 4.114 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.134 4.134 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.069 0.931 28 H -0.010 1.010 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.052 0.948 34 H 0.017 0.983 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.131 0.869 42 H 0.144 0.856 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.827 7.141 -1.850 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.215 4.215 3 C 0.013 3.987 4 N -0.325 5.325 5 C 0.143 3.857 6 C -0.578 4.578 7 H 0.068 0.932 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.789 3.211 11 H -0.205 1.205 12 H -0.200 1.200 13 H -0.183 1.183 14 C 0.324 3.676 15 O -0.481 6.481 16 C -0.169 4.169 17 C -0.103 4.103 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.214 4.214 21 C -0.190 4.190 22 C -0.171 4.171 23 H 0.133 0.867 24 H 0.142 0.858 25 H 0.105 0.895 26 H 0.125 0.875 27 H 0.087 0.913 28 H 0.008 0.992 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.149 0.851 42 H 0.162 0.838 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.231 7.093 -1.411 20.546 hybrid contribution 1.932 -0.073 0.022 1.934 sum -17.298 7.020 -1.390 18.720 Atomic orbital electron populations 1.24126 0.94210 1.03702 0.96540 1.23136 0.97248 0.97613 1.03453 1.20897 0.92437 0.97274 0.88111 1.48176 1.16639 1.54260 1.13389 1.18671 0.79607 0.92567 0.94864 1.21631 0.94198 0.97786 1.44177 0.93243 1.25856 1.00292 0.97456 0.95535 1.70046 1.17975 1.19528 1.49310 0.85513 0.77839 0.78577 0.79192 1.20547 1.19979 1.18297 1.20401 0.89373 0.76636 0.81233 1.90619 1.56670 1.58047 1.42764 1.21431 0.89243 1.00044 1.06231 1.21185 1.00712 0.88877 0.99482 1.21545 0.97837 0.95909 1.00413 1.21488 0.99607 0.92991 1.01044 1.21804 0.98769 0.99650 1.01158 1.23097 1.01713 1.03743 0.90454 1.23451 0.98080 0.96061 0.99471 0.86670 0.85830 0.89517 0.87473 0.91292 0.99204 0.96074 0.92372 0.90594 0.87013 0.92876 0.96418 0.91453 0.89579 0.93220 0.94759 0.90893 0.91327 0.85089 0.83771 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 11.61 67.78 0.79 -1.95 16 2 C -0.20 -5.42 8.86 25.65 0.23 -5.19 16 3 C 0.13 4.49 5.46 85.63 0.47 4.96 16 4 N -0.60 -26.84 2.44 -830.48 -2.03 -28.87 16 5 C 0.26 15.07 5.12 85.63 0.44 15.51 16 6 C -0.54 -32.66 9.39 25.60 0.24 -32.42 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 8 C 0.01 0.45 5.46 84.65 0.46 0.91 16 9 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 10 Si 0.96 46.65 29.54 68.60 2.03 48.67 16 11 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 14 C 0.53 23.77 5.83 87.66 0.51 24.28 16 15 O -0.60 -33.71 16.68 -3.05 -0.05 -33.76 16 16 C -0.17 -4.90 0.90 -52.93 -0.05 -4.94 16 17 C -0.07 -1.52 4.95 30.59 0.15 -1.37 16 18 C -0.12 -3.43 4.86 30.59 0.15 -3.29 16 19 C -0.11 -2.44 5.93 30.60 0.18 -2.26 16 20 C -0.16 -3.58 9.91 71.98 0.71 -2.87 16 21 C -0.15 -3.84 9.85 30.62 0.30 -3.54 16 22 C -0.13 -2.86 6.79 30.62 0.21 -2.65 16 23 H 0.12 1.71 8.06 -2.91 -0.02 1.69 16 24 H 0.12 1.66 6.57 -2.91 -0.02 1.65 16 25 H 0.09 2.76 8.06 -2.91 -0.02 2.74 16 26 H 0.11 2.85 4.32 -2.39 -0.01 2.84 16 27 H 0.07 2.48 8.12 -2.38 -0.02 2.46 16 28 H -0.01 -0.67 7.54 -2.39 -0.02 -0.69 16 29 H 0.02 1.22 8.07 -2.38 -0.02 1.21 16 30 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.08 1.66 6.12 -2.39 -0.01 1.64 16 32 H 0.11 1.68 8.09 -2.39 -0.02 1.66 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.02 0.67 7.62 -2.39 -0.02 0.65 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.13 2.38 8.14 -2.38 -0.02 2.36 16 42 H 0.14 1.80 7.47 -2.39 -0.02 1.78 16 43 H 0.09 2.17 6.50 -2.39 -0.02 2.15 16 Total: -1.00 -78.72 345.96 5.98 -72.74 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.95 Total: 13.84 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.79 Total: -14.81 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -1.74 Total: -86.68 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.05 Total: -33.76 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -78.72 5.98 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820223800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.466 kcal (2) G-P(sol) polarization free energy of solvation -78.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds