Wall clock time and date at job start Mon Mar 30 2020 06:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.46862 * 2 1 4 4 C 1.50699 * 119.99793 * 275.00001 * 3 2 1 5 5 C 1.32995 * 119.99860 * 95.00184 * 3 2 1 6 6 C 1.50703 * 119.99801 * 5.12512 * 5 3 2 7 7 C 1.47102 * 119.99875 * 185.11925 * 5 3 2 8 8 O 1.21614 * 119.99889 * 5.71285 * 7 5 3 9 9 N 1.34770 * 119.99951 * 185.70571 * 7 5 3 10 10 C 1.46505 * 120.00176 * 180.02562 * 9 7 5 11 11 H 1.08996 * 110.01060 * 326.39077 * 10 9 7 12 12 C 1.54266 * 110.03283 * 87.83253 * 10 9 7 13 13 C 1.54892 * 104.19112 * 95.67782 * 12 10 9 14 14 C 1.54885 * 102.75082 * 37.94279 * 13 12 10 15 15 H 1.08995 * 110.48641 * 80.73807 * 14 13 12 16 16 C 1.50698 * 110.48396 * 203.37917 * 14 13 12 17 17 H 1.07997 * 120.00346 * 114.77937 * 16 14 13 18 18 C 1.37879 * 119.99851 * 294.77168 * 16 14 13 19 19 N 1.31516 * 120.00263 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00056 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47208 * 90.00057 * 20 18 16 22 22 H 1.48494 * 109.47456 * 210.00026 * 20 18 16 23 23 H 1.48501 * 109.47014 * 330.00203 * 20 18 16 24 24 C 1.53866 * 110.03247 * 205.00336 * 10 9 7 25 25 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47271 * 299.99848 * 1 2 3 27 27 H 1.09002 * 109.47721 * 59.99804 * 1 2 3 28 28 H 1.08996 * 109.47025 * 240.00610 * 2 1 3 29 29 H 1.08997 * 109.46928 * 119.99846 * 2 1 3 30 30 H 1.09000 * 109.47332 * 354.83159 * 4 3 2 31 31 H 1.08994 * 109.47081 * 114.83573 * 4 3 2 32 32 H 1.09008 * 109.46950 * 234.83048 * 4 3 2 33 33 H 1.08997 * 109.47249 * 90.00171 * 6 5 3 34 34 H 1.09000 * 109.46401 * 209.99697 * 6 5 3 35 35 H 1.09000 * 109.47137 * 329.99847 * 6 5 3 36 36 H 0.97008 * 120.00228 * 0.02562 * 9 7 5 37 37 H 1.08993 * 110.48417 * 214.35261 * 12 10 9 38 38 H 1.09003 * 110.48400 * 337.00020 * 12 10 9 39 39 H 1.08994 * 110.75484 * 279.62309 * 13 12 10 40 40 H 1.09001 * 110.75296 * 156.26270 * 13 12 10 41 41 H 0.96998 * 119.99989 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.03820 * 0.02562 * 24 10 9 43 43 H 1.09003 * 110.03709 * 121.42601 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1761 2.1692 -1.3002 5 6 2.3485 2.0143 1.1474 6 6 2.3155 1.2315 2.4347 7 6 2.7308 3.4348 1.1598 8 8 2.6578 4.0931 0.1399 9 7 3.1617 4.0066 2.3016 10 6 3.5419 5.4214 2.3142 11 1 3.9847 5.6972 1.3572 12 6 2.3049 6.2985 2.5976 13 6 2.3593 6.5496 4.1251 14 6 3.8759 6.7189 4.3899 15 1 4.1972 7.7289 4.1353 16 6 4.1979 6.4087 5.8290 17 1 4.8183 5.5589 6.0725 18 6 3.7005 7.2099 6.8348 19 7 2.9447 8.2446 6.5384 20 14 4.1002 6.8258 8.6187 21 1 5.3457 7.5333 9.0104 22 1 2.9815 7.2769 9.4848 23 1 4.2911 5.3619 8.7790 24 6 4.5407 5.6887 3.4536 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.9603 1.4980 -2.1315 31 1 1.4772 3.0054 -1.3173 32 1 3.1951 2.5454 -1.3920 33 1 3.2915 0.7793 2.6102 34 1 2.0712 1.9001 3.2602 35 1 1.5597 0.4492 2.3649 36 1 3.2202 3.4815 3.1151 37 1 2.3725 7.2406 2.0536 38 1 1.3913 5.7673 2.3305 39 1 1.9650 5.6929 4.6716 40 1 1.8175 7.4585 4.3866 41 1 2.5952 8.8084 7.2460 42 1 4.7431 4.7657 3.9971 43 1 5.4681 6.0950 3.0498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836796906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:42 Heat of formation + Delta-G solvation = -53.818434 kcal Electronic energy + Delta-G solvation = -20507.522084 eV Core-core repulsion = 17551.629235 eV Total energy + Delta-G solvation = -2955.892849 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87816 -37.54915 -36.25216 -33.65877 -32.23807 -31.30200 -29.80531 -28.14121 -27.07091 -24.92973 -24.36198 -23.63864 -21.14162 -19.49142 -19.16242 -17.96438 -16.56129 -16.17849 -15.69478 -15.17054 -14.69697 -14.60831 -14.11335 -14.05560 -13.53115 -13.15008 -12.92231 -12.69935 -12.61465 -12.42068 -12.25911 -12.00865 -11.69258 -11.51990 -11.45496 -11.02617 -11.00349 -10.90596 -10.81118 -10.55240 -10.35467 -9.92196 -9.56504 -9.25267 -9.17857 -8.85918 -8.79652 -8.42329 -8.32962 -6.01133 -4.04259 1.45661 3.29459 3.36694 3.38641 3.52533 3.65239 4.43137 4.65491 4.72179 4.97463 5.04684 5.11996 5.30721 5.37730 5.40577 5.54769 5.61994 5.63696 5.68217 5.70242 5.81853 5.85446 5.89156 5.90256 5.99956 6.17846 6.35425 6.38512 6.54949 6.59522 6.67539 6.68337 6.79263 6.96390 6.98998 7.28653 7.37109 7.70570 7.86382 7.97984 8.03470 8.43516 8.62659 8.98382 9.59734 11.08328 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029854 B = 0.004103 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.663254 B = 6822.527286 C = 7284.968317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.048 4.048 4 C -0.110 4.110 5 C -0.193 4.193 6 C -0.119 4.119 7 C 0.546 3.454 8 O -0.549 6.549 9 N -0.711 5.711 10 C 0.140 3.860 11 H 0.075 0.925 12 C -0.135 4.135 13 C -0.099 4.099 14 C 0.048 3.952 15 H 0.033 0.967 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.123 4.123 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.259 0.741 42 H 0.060 0.940 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.957 -15.033 -10.801 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.050 4.050 4 C -0.166 4.166 5 C -0.196 4.196 6 C -0.176 4.176 7 C 0.335 3.665 8 O -0.429 6.429 9 N -0.361 5.361 10 C 0.036 3.964 11 H 0.093 0.907 12 C -0.174 4.174 13 C -0.137 4.137 14 C 0.029 3.971 15 H 0.051 0.949 16 C -0.552 4.552 17 H 0.073 0.927 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.161 4.161 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.092 -14.388 -11.413 18.624 hybrid contribution 0.193 -0.338 1.530 1.579 sum -2.899 -14.727 -9.882 17.970 Atomic orbital electron populations 1.21691 0.94312 1.01749 1.02558 1.20777 0.96505 0.93016 1.03106 1.22297 0.92497 0.95239 0.94935 1.20935 1.03740 0.99273 0.92617 1.21302 1.07911 0.94193 0.96179 1.20840 1.02419 0.99743 0.94561 1.18340 0.77430 0.87133 0.83577 1.90736 1.54474 1.65027 1.32712 1.46253 1.65973 1.12292 1.11591 1.21751 0.95923 0.79139 0.99592 0.90678 1.22838 0.96311 0.98381 0.99881 1.22451 1.00345 1.00637 0.90286 1.19462 0.90866 0.93648 0.93091 0.94921 1.21170 1.31173 1.12099 0.90798 0.92731 1.24983 0.95076 0.95019 0.98841 1.69961 1.33963 1.16250 1.32487 0.86656 0.77906 0.78548 0.85222 1.20755 1.21318 1.19985 1.22607 0.96812 1.01224 0.95430 0.92279 0.92310 0.92388 0.90867 0.90453 0.93379 0.89816 0.90619 0.91154 0.91427 0.91078 0.76580 0.92125 0.93225 0.93551 0.91534 0.93081 0.92105 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 37.16 0.37 -0.79 16 2 C -0.10 -0.83 5.42 -27.88 -0.15 -0.98 16 3 C -0.05 -0.56 5.36 -101.16 -0.54 -1.10 16 4 C -0.11 -1.34 8.34 36.01 0.30 -1.04 16 5 C -0.19 -2.50 5.99 -102.84 -0.62 -3.12 16 6 C -0.12 -1.22 8.75 36.01 0.32 -0.91 16 7 C 0.55 8.97 7.67 -12.67 -0.10 8.87 16 8 O -0.55 -10.42 12.84 5.26 0.07 -10.35 16 9 N -0.71 -11.69 4.96 -53.91 -0.27 -11.96 16 10 C 0.14 2.61 3.25 -66.81 -0.22 2.39 16 11 H 0.08 1.44 7.56 -51.93 -0.39 1.04 16 12 C -0.14 -2.70 6.54 -25.07 -0.16 -2.86 16 13 C -0.10 -2.28 5.75 -24.74 -0.14 -2.42 16 14 C 0.05 1.16 2.72 -90.12 -0.25 0.92 16 15 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 16 C -0.51 -13.72 8.46 -34.44 -0.29 -14.01 16 17 H 0.05 1.43 7.54 -52.49 -0.40 1.03 16 18 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 19 N -0.89 -25.28 12.29 55.43 0.68 -24.60 16 20 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.12 -2.46 6.13 -25.62 -0.16 -2.62 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 29 H 0.08 0.60 6.07 -51.93 -0.32 0.28 16 30 H 0.05 0.47 7.98 -51.93 -0.41 0.05 16 31 H 0.08 1.17 7.11 -51.93 -0.37 0.81 16 32 H 0.08 1.03 7.38 -51.92 -0.38 0.65 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.72 6.94 -51.93 -0.36 0.36 16 35 H 0.07 0.62 6.24 -51.93 -0.32 0.29 16 36 H 0.40 5.95 6.57 -40.82 -0.27 5.68 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 39 H 0.05 1.08 8.05 -51.93 -0.42 0.67 16 40 H 0.07 1.68 7.55 -51.93 -0.39 1.29 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.19 7.13 -51.93 -0.37 0.82 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -29.45 338.15 -8.52 -37.97 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.34 Total: 3.97 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.74 Total: -16.04 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.41 Total: -36.56 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.45 -8.52 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836796906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.853 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds