Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.46862 * 2 1 4 4 C 1.50699 * 119.99793 * 275.00001 * 3 2 1 5 5 C 1.32995 * 119.99860 * 95.00184 * 3 2 1 6 6 C 1.50703 * 119.99801 * 5.12512 * 5 3 2 7 7 C 1.47102 * 119.99875 * 185.11925 * 5 3 2 8 8 O 1.21614 * 119.99889 * 5.71285 * 7 5 3 9 9 N 1.34770 * 119.99951 * 185.70571 * 7 5 3 10 10 C 1.46505 * 120.00176 * 180.02562 * 9 7 5 11 11 H 1.08996 * 110.01060 * 326.39077 * 10 9 7 12 12 C 1.54266 * 110.03283 * 87.83253 * 10 9 7 13 13 C 1.54892 * 104.19112 * 95.67782 * 12 10 9 14 14 C 1.54885 * 102.75082 * 37.94279 * 13 12 10 15 15 H 1.08995 * 110.48641 * 80.73807 * 14 13 12 16 16 C 1.50698 * 110.48396 * 203.37917 * 14 13 12 17 17 H 1.07997 * 120.00346 * 114.77937 * 16 14 13 18 18 C 1.37879 * 119.99851 * 294.77168 * 16 14 13 19 19 N 1.31516 * 120.00263 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00056 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47208 * 90.00057 * 20 18 16 22 22 H 1.48494 * 109.47456 * 210.00026 * 20 18 16 23 23 H 1.48501 * 109.47014 * 330.00203 * 20 18 16 24 24 C 1.53866 * 110.03247 * 205.00336 * 10 9 7 25 25 H 1.08998 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47271 * 299.99848 * 1 2 3 27 27 H 1.09002 * 109.47721 * 59.99804 * 1 2 3 28 28 H 1.08996 * 109.47025 * 240.00610 * 2 1 3 29 29 H 1.08997 * 109.46928 * 119.99846 * 2 1 3 30 30 H 1.09000 * 109.47332 * 354.83159 * 4 3 2 31 31 H 1.08994 * 109.47081 * 114.83573 * 4 3 2 32 32 H 1.09008 * 109.46950 * 234.83048 * 4 3 2 33 33 H 1.08997 * 109.47249 * 90.00171 * 6 5 3 34 34 H 1.09000 * 109.46401 * 209.99697 * 6 5 3 35 35 H 1.09000 * 109.47137 * 329.99847 * 6 5 3 36 36 H 0.97008 * 120.00228 * 0.02562 * 9 7 5 37 37 H 1.08993 * 110.48417 * 214.35261 * 12 10 9 38 38 H 1.09003 * 110.48400 * 337.00020 * 12 10 9 39 39 H 1.08994 * 110.75484 * 279.62309 * 13 12 10 40 40 H 1.09001 * 110.75296 * 156.26270 * 13 12 10 41 41 H 0.96998 * 119.99989 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.03820 * 0.02562 * 24 10 9 43 43 H 1.09003 * 110.03709 * 121.42601 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1761 2.1692 -1.3002 5 6 2.3485 2.0143 1.1474 6 6 2.3155 1.2315 2.4347 7 6 2.7308 3.4348 1.1598 8 8 2.6578 4.0931 0.1399 9 7 3.1617 4.0066 2.3016 10 6 3.5419 5.4214 2.3142 11 1 3.9847 5.6972 1.3572 12 6 2.3049 6.2985 2.5976 13 6 2.3593 6.5496 4.1251 14 6 3.8759 6.7189 4.3899 15 1 4.1972 7.7289 4.1353 16 6 4.1979 6.4087 5.8290 17 1 4.8183 5.5589 6.0725 18 6 3.7005 7.2099 6.8348 19 7 2.9447 8.2446 6.5384 20 14 4.1002 6.8258 8.6187 21 1 5.3457 7.5333 9.0104 22 1 2.9815 7.2769 9.4848 23 1 4.2911 5.3619 8.7790 24 6 4.5407 5.6887 3.4536 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.9603 1.4980 -2.1315 31 1 1.4772 3.0054 -1.3173 32 1 3.1951 2.5454 -1.3920 33 1 3.2915 0.7793 2.6102 34 1 2.0712 1.9001 3.2602 35 1 1.5597 0.4492 2.3649 36 1 3.2202 3.4815 3.1151 37 1 2.3725 7.2406 2.0536 38 1 1.3913 5.7673 2.3305 39 1 1.9650 5.6929 4.6716 40 1 1.8175 7.4585 4.3866 41 1 2.5952 8.8084 7.2460 42 1 4.7431 4.7657 3.9971 43 1 5.4681 6.0950 3.0498 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836796906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -69.632321 kcal Electronic energy + Delta-G solvation = -20508.207826 eV Core-core repulsion = 17551.629235 eV Total energy + Delta-G solvation = -2956.578591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.16558 -39.02506 -37.38142 -35.28802 -33.92640 -32.28110 -30.75641 -29.96039 -28.72777 -26.04302 -25.72880 -24.87820 -22.35628 -21.16573 -20.81860 -19.16272 -18.51154 -17.37035 -16.91071 -16.63516 -16.34490 -15.76846 -15.64582 -15.09046 -14.80328 -14.46745 -14.17608 -13.88951 -13.73940 -13.55266 -13.43276 -13.19630 -12.94219 -12.81262 -12.75702 -12.47943 -12.41810 -12.36299 -12.20869 -12.14254 -11.67118 -11.62745 -11.45819 -11.08079 -10.82145 -10.48852 -10.43454 -10.03228 -9.58353 -8.09493 -6.19325 0.44140 1.43479 1.44502 1.54085 2.31298 2.37035 2.46463 3.21698 3.72679 3.91101 3.94930 4.02019 4.11659 4.20875 4.27744 4.47247 4.59739 4.68571 4.73108 4.75030 4.79357 4.82224 4.90227 4.93813 4.98579 5.02744 5.09513 5.12914 5.13656 5.17526 5.24500 5.27107 5.39475 5.43010 5.62762 5.66445 5.69359 5.77995 5.90420 5.99439 6.38630 6.70717 6.91757 7.34707 7.48351 8.99517 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029854 B = 0.004103 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.663254 B = 6822.527286 C = 7284.968317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.036 4.036 4 C -0.109 4.109 5 C -0.212 4.212 6 C -0.114 4.114 7 C 0.540 3.460 8 O -0.581 6.581 9 N -0.708 5.708 10 C 0.151 3.849 11 H 0.074 0.926 12 C -0.125 4.125 13 C -0.088 4.088 14 C 0.040 3.960 15 H 0.000 1.000 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.953 3.047 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.263 1.263 24 C -0.110 4.110 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.407 0.593 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.036 0.964 41 H 0.259 0.741 42 H 0.070 0.930 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -17.905 -10.801 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.038 4.038 4 C -0.165 4.165 5 C -0.215 4.215 6 C -0.171 4.171 7 C 0.331 3.669 8 O -0.464 6.464 9 N -0.359 5.359 10 C 0.046 3.954 11 H 0.092 0.908 12 C -0.163 4.163 13 C -0.126 4.126 14 C 0.021 3.979 15 H 0.018 0.982 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.561 5.561 20 Si 0.779 3.221 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.188 1.188 24 C -0.148 4.148 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.244 0.756 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.984 -17.290 -11.406 20.927 hybrid contribution 0.150 0.580 1.444 1.563 sum -2.834 -16.710 -9.962 19.660 Atomic orbital electron populations 1.21697 0.93714 1.02901 1.01935 1.20863 0.96787 0.90750 1.04688 1.22645 0.90451 0.96718 0.93968 1.20888 1.02044 0.99261 0.94351 1.21320 1.09600 0.92490 0.98091 1.20861 1.03795 0.99733 0.92696 1.18963 0.76569 0.88567 0.82778 1.90724 1.55798 1.66161 1.33687 1.46144 1.66121 1.11286 1.12319 1.21436 0.94704 0.80423 0.98789 0.90831 1.22722 0.97315 0.98898 0.97402 1.22213 0.99153 0.98807 0.92411 1.19435 0.91985 0.93161 0.93314 0.98170 1.21552 1.30863 1.12085 0.92051 0.92261 1.25782 0.95031 0.94916 1.03071 1.70102 1.35094 1.17263 1.33616 0.85628 0.77499 0.78845 0.80112 1.20429 1.21363 1.18760 1.22425 0.97101 1.00295 0.95000 0.90242 0.93194 0.92844 0.89190 0.89021 0.90681 0.91990 0.92397 0.89927 0.92130 0.89137 0.75558 0.92112 0.92825 0.94184 0.94525 0.93232 0.91168 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 71.98 0.71 -1.15 16 2 C -0.09 -1.28 5.42 29.85 0.16 -1.11 16 3 C -0.04 -0.76 5.36 -17.61 -0.09 -0.86 16 4 C -0.11 -2.56 8.34 71.24 0.59 -1.96 16 5 C -0.21 -5.15 5.99 -18.70 -0.11 -5.26 16 6 C -0.11 -2.06 8.75 71.24 0.62 -1.44 16 7 C 0.54 17.38 7.67 86.57 0.66 18.04 16 8 O -0.58 -22.12 12.84 -4.08 -0.05 -22.17 16 9 N -0.71 -22.67 4.96 -442.71 -2.20 -24.86 16 10 C 0.15 5.59 3.25 45.71 0.15 5.74 16 11 H 0.07 2.79 7.56 -2.39 -0.02 2.77 16 12 C -0.12 -5.01 6.54 31.67 0.21 -4.80 16 13 C -0.09 -4.13 5.75 31.88 0.18 -3.95 16 14 C 0.04 1.96 2.72 -10.47 -0.03 1.93 16 15 H 0.00 0.00 8.14 -2.39 -0.02 -0.01 16 16 C -0.53 -28.24 8.46 25.60 0.22 -28.02 16 17 H 0.06 3.05 7.54 -2.91 -0.02 3.03 16 18 C 0.01 0.58 5.35 84.65 0.45 1.03 16 19 N -0.92 -53.60 12.29 21.45 0.26 -53.33 16 20 Si 0.95 42.91 29.54 68.60 2.03 44.93 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 C -0.11 -4.37 6.13 31.32 0.19 -4.17 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.97 8.11 -2.39 -0.02 0.96 16 29 H 0.09 1.03 6.07 -2.39 -0.01 1.02 16 30 H 0.07 1.30 7.98 -2.39 -0.02 1.29 16 31 H 0.06 1.74 7.11 -2.39 -0.02 1.72 16 32 H 0.06 1.57 7.38 -2.38 -0.02 1.55 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.17 6.94 -2.39 -0.02 1.16 16 35 H 0.09 1.27 6.24 -2.39 -0.01 1.25 16 36 H 0.41 11.62 6.57 -92.70 -0.61 11.01 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 39 H 0.04 1.90 8.05 -2.39 -0.02 1.88 16 40 H 0.04 1.91 7.55 -2.39 -0.02 1.90 16 41 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 42 H 0.07 2.64 7.13 -2.39 -0.02 2.63 16 43 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -64.16 338.15 4.33 -59.82 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.37 Total: 21.57 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.92 Total: -25.96 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -1.93 Total: -78.19 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -64.16 4.33 -59.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836796906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.811 kcal (2) G-P(sol) polarization free energy of solvation -64.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds