Wall clock time and date at job start Mon Mar 30 2020 06:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47523 * 2 1 4 4 C 1.50701 * 119.99756 * 274.49385 * 3 2 1 5 5 C 1.32988 * 120.00185 * 94.48765 * 3 2 1 6 6 C 1.50694 * 120.00228 * 185.67868 * 5 3 2 7 7 C 1.47107 * 119.99931 * 5.67892 * 5 3 2 8 8 O 1.21608 * 120.00195 * 255.58666 * 7 5 3 9 9 N 1.34775 * 119.99876 * 75.58653 * 7 5 3 10 10 C 1.46503 * 120.00258 * 179.97438 * 9 7 5 11 11 H 1.09004 * 110.05336 * 326.42356 * 10 9 7 12 12 C 1.54269 * 110.03021 * 87.83235 * 10 9 7 13 13 C 1.54885 * 104.19511 * 95.67832 * 12 10 9 14 14 C 1.54891 * 102.74946 * 37.94281 * 13 12 10 15 15 H 1.09000 * 110.49044 * 80.73257 * 14 13 12 16 16 C 1.50699 * 110.48778 * 203.37988 * 14 13 12 17 17 H 1.08009 * 119.99982 * 114.77471 * 16 14 13 18 18 C 1.37877 * 120.00114 * 294.77316 * 16 14 13 19 19 N 1.31512 * 119.99675 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 120.00148 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47003 * 60.00030 * 20 18 16 22 22 H 1.48498 * 109.47146 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47079 * 300.00190 * 20 18 16 24 24 C 1.53869 * 110.03640 * 205.00228 * 10 9 7 25 25 H 1.08994 * 109.47157 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46873 * 300.00281 * 1 2 3 27 27 H 1.09002 * 109.46990 * 60.00032 * 1 2 3 28 28 H 1.09002 * 109.46873 * 239.99719 * 2 1 3 29 29 H 1.09002 * 109.46990 * 119.99968 * 2 1 3 30 30 H 1.09008 * 109.46741 * 234.92214 * 4 3 2 31 31 H 1.09000 * 109.47332 * 354.91641 * 4 3 2 32 32 H 1.08999 * 109.47207 * 114.92368 * 4 3 2 33 33 H 1.09005 * 109.47270 * 275.28497 * 6 5 3 34 34 H 1.08998 * 109.47050 * 35.29093 * 6 5 3 35 35 H 1.09003 * 109.47207 * 155.29011 * 6 5 3 36 36 H 0.97001 * 120.00053 * 359.97438 * 9 7 5 37 37 H 1.08996 * 110.48608 * 214.35687 * 12 10 9 38 38 H 1.09005 * 110.48851 * 336.99968 * 12 10 9 39 39 H 1.08998 * 110.75801 * 279.62689 * 13 12 10 40 40 H 1.08998 * 110.91894 * 156.32581 * 13 12 10 41 41 H 0.97001 * 119.99789 * 180.02562 * 19 18 16 42 42 H 1.09001 * 110.03272 * 359.97438 * 24 10 9 43 43 H 1.08997 * 110.03683 * 121.42697 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.1873 2.1652 -1.3011 5 6 2.3391 2.0177 1.1482 6 6 2.7186 3.4760 1.1615 7 6 2.3080 1.2543 2.4053 8 8 1.3887 1.4068 3.1866 9 7 3.2982 0.3859 2.6910 10 6 3.2676 -0.3740 3.9432 11 1 2.8138 0.2250 4.7329 12 6 2.4722 -1.6814 3.7485 13 6 3.5571 -2.7445 3.4455 14 6 4.7171 -2.3257 4.3827 15 1 4.5383 -2.6860 5.3957 16 6 6.0313 -2.8467 3.8605 17 1 6.7926 -2.1560 3.5289 18 6 6.2618 -4.2049 3.8062 19 7 5.3347 -5.0459 4.2096 20 14 7.8905 -4.8507 3.1583 21 1 8.9987 -4.3321 4.0000 22 1 7.8874 -6.3350 3.2027 23 1 8.0801 -4.3983 1.7566 24 6 4.6949 -0.7836 4.3464 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2075 2.5397 -1.3863 31 1 1.9768 1.4921 -2.1322 32 1 1.4897 3.0024 -1.3260 33 1 3.7812 3.5770 0.9406 34 1 2.1386 4.0092 0.4082 35 1 2.5104 3.8967 2.1453 36 1 4.0313 0.2640 2.0676 37 1 1.9308 -1.9377 4.6591 38 1 1.7844 -1.5880 2.9081 39 1 3.8665 -2.6940 2.4016 40 1 3.2020 -3.7446 3.6937 41 1 5.4970 -6.0014 4.1717 42 1 5.4104 -0.4174 3.6102 43 1 4.9340 -0.3834 5.3317 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836796907.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:44 Heat of formation + Delta-G solvation = -57.953089 kcal Electronic energy + Delta-G solvation = -20828.846178 eV Core-core repulsion = 17872.774037 eV Total energy + Delta-G solvation = -2956.072141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.87843 -37.38718 -36.32852 -33.46836 -32.28198 -31.81052 -29.09250 -28.16634 -27.33636 -25.99348 -23.89639 -22.94141 -21.35829 -19.50467 -19.27469 -18.04808 -16.58118 -16.15567 -15.71006 -15.22486 -14.71768 -14.34929 -14.21051 -13.98528 -13.58323 -13.04223 -12.91869 -12.79288 -12.58846 -12.46612 -12.31166 -12.09450 -11.96980 -11.70162 -11.04775 -11.00544 -10.92801 -10.85966 -10.80621 -10.58744 -10.41913 -9.94571 -9.58823 -9.47218 -9.20911 -8.82930 -8.73988 -8.52151 -8.35594 -6.01749 -4.04907 1.72335 2.95121 3.30109 3.35631 3.37354 3.65110 4.42591 4.65073 4.78508 5.03550 5.23183 5.28708 5.30046 5.31319 5.43414 5.48562 5.57027 5.62019 5.66476 5.72728 5.76810 5.79073 5.84697 5.94582 6.08478 6.20545 6.32235 6.36011 6.41400 6.62106 6.64435 6.69008 6.76545 6.94411 6.95371 7.26326 7.34602 7.69371 7.85212 7.91105 8.02020 8.42586 8.55834 8.97414 9.59087 11.07688 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022598 B = 0.004791 C = 0.004650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.738281 B = 5843.170617 C = 6020.562174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.085 4.085 4 C -0.115 4.115 5 C -0.173 4.173 6 C -0.101 4.101 7 C 0.556 3.444 8 O -0.548 6.548 9 N -0.708 5.708 10 C 0.138 3.862 11 H 0.075 0.925 12 C -0.136 4.136 13 C -0.099 4.099 14 C 0.049 3.951 15 H 0.033 0.967 16 C -0.515 4.515 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.123 4.123 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.400 0.600 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.755 12.531 -9.573 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 C -0.086 4.086 4 C -0.172 4.172 5 C -0.176 4.176 6 C -0.158 4.158 7 C 0.342 3.658 8 O -0.427 6.427 9 N -0.358 5.358 10 C 0.035 3.965 11 H 0.093 0.907 12 C -0.174 4.174 13 C -0.137 4.137 14 C 0.030 3.970 15 H 0.051 0.949 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.161 4.161 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.439 12.430 -8.959 16.620 hybrid contribution 1.233 -0.559 -0.650 1.502 sum -5.206 11.870 -9.609 16.135 Atomic orbital electron populations 1.21672 0.94425 1.01914 1.02018 1.20800 0.96627 0.92991 1.03590 1.22071 0.96542 0.96072 0.93948 1.20839 1.02156 0.99944 0.94233 1.21319 1.06417 0.97135 0.92747 1.20621 1.01326 0.90892 1.02933 1.18397 0.82222 0.79098 0.86033 1.90768 1.34852 1.67055 1.49995 1.46382 1.25124 1.41547 1.22789 1.21791 0.98023 0.91980 0.84743 0.90655 1.22845 0.98251 0.95915 1.00413 1.22449 0.94635 0.97114 0.99507 1.19457 0.94129 0.87522 0.95897 0.94922 1.21128 1.00059 0.91485 1.42623 0.92796 1.24972 0.96433 0.97132 0.95302 1.69948 1.33222 1.02379 1.47122 0.86723 0.84460 0.77723 0.79445 1.20331 1.21357 1.20367 1.22612 0.92880 1.00702 0.99877 0.92289 0.92250 0.92837 0.90854 0.90338 0.91033 0.91648 0.91198 0.91151 0.91272 0.91603 0.76513 0.92061 0.93218 0.93537 0.91497 0.93017 0.92029 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.90 37.16 0.37 -1.31 16 2 C -0.10 -1.27 5.72 -27.88 -0.16 -1.43 16 3 C -0.09 -0.98 5.36 -101.17 -0.54 -1.53 16 4 C -0.12 -0.97 8.89 36.01 0.32 -0.65 16 5 C -0.17 -2.26 5.74 -102.85 -0.59 -2.85 16 6 C -0.10 -1.05 9.36 36.00 0.34 -0.71 16 7 C 0.56 9.17 5.63 -12.66 -0.07 9.10 16 8 O -0.55 -11.04 16.76 5.27 0.09 -10.96 16 9 N -0.71 -11.50 4.44 -53.90 -0.24 -11.74 16 10 C 0.14 2.55 3.24 -66.81 -0.22 2.33 16 11 H 0.08 1.44 7.57 -51.93 -0.39 1.04 16 12 C -0.14 -2.65 6.54 -25.07 -0.16 -2.82 16 13 C -0.10 -2.24 5.75 -24.74 -0.14 -2.38 16 14 C 0.05 1.17 2.72 -90.11 -0.25 0.92 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.51 -13.64 8.46 -34.44 -0.29 -13.94 16 17 H 0.05 1.40 7.54 -52.48 -0.40 1.00 16 18 C 0.06 1.72 5.35 -17.82 -0.10 1.63 16 19 N -0.89 -25.14 12.29 55.43 0.68 -24.46 16 20 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 24 C -0.12 -2.43 6.13 -25.61 -0.16 -2.59 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.08 1.15 5.82 -51.93 -0.30 0.85 16 30 H 0.07 0.54 8.05 -51.92 -0.42 0.12 16 31 H 0.06 0.49 7.97 -51.93 -0.41 0.08 16 32 H 0.07 0.53 7.53 -51.93 -0.39 0.14 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.60 6.90 -51.93 -0.36 0.24 16 35 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 36 H 0.40 5.94 8.30 -40.82 -0.34 5.60 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.94 7.62 -51.93 -0.40 0.55 16 39 H 0.05 1.07 8.05 -51.93 -0.42 0.65 16 40 H 0.07 1.67 7.55 -51.93 -0.39 1.28 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.06 1.19 7.13 -51.93 -0.37 0.82 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -29.78 344.63 -8.47 -38.25 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.52 Total: 4.08 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.65 Total: -16.21 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.44 Total: -36.20 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.78 -8.47 -38.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836796907.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.705 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds