Wall clock time and date at job start Mon Mar 30 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47028 * 2 1 4 4 C 1.52998 * 109.47250 * 239.99412 * 2 1 3 5 5 C 1.50699 * 109.46983 * 119.99844 * 2 1 3 6 6 C 1.32999 * 119.99862 * 359.97438 * 5 2 1 7 7 C 1.47099 * 119.99684 * 180.02562 * 6 5 2 8 8 O 1.21612 * 120.00549 * 4.98640 * 7 6 5 9 9 N 1.34779 * 119.99724 * 184.97633 * 7 6 5 10 10 C 1.46923 * 120.63223 * 354.77053 * 9 7 6 11 11 C 1.53187 * 108.89137 * 233.55194 * 10 9 7 12 12 C 1.53066 * 109.29931 * 305.57459 * 11 10 9 13 13 C 1.53044 * 109.65797 * 61.15415 * 12 11 10 14 14 H 1.09007 * 109.49404 * 58.65045 * 13 12 11 15 15 C 1.50699 * 109.50295 * 178.74821 * 13 12 11 16 16 H 1.08001 * 119.99707 * 359.83499 * 15 13 12 17 17 C 1.37874 * 120.00213 * 179.83920 * 15 13 12 18 18 N 1.31518 * 120.00126 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99957 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47122 * 60.00262 * 19 17 15 21 21 H 1.48504 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47313 * 300.00105 * 19 17 15 23 23 C 1.46934 * 120.62814 * 174.78328 * 9 7 6 24 24 H 1.08993 * 109.47253 * 300.00244 * 1 2 3 25 25 H 1.09008 * 109.47026 * 60.00626 * 1 2 3 26 26 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46968 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46739 * 299.99015 * 3 2 1 29 29 H 1.08993 * 109.47302 * 59.99786 * 3 2 1 30 30 H 1.08997 * 109.47272 * 300.00283 * 4 2 1 31 31 H 1.09006 * 109.46848 * 60.00474 * 4 2 1 32 32 H 1.09004 * 109.47307 * 180.02562 * 4 2 1 33 33 H 1.08000 * 119.99896 * 180.02562 * 5 2 1 34 34 H 1.07995 * 120.00248 * 359.97438 * 6 5 2 35 35 H 1.08997 * 109.58842 * 353.41627 * 10 9 7 36 36 H 1.09006 * 109.58326 * 113.69555 * 10 9 7 37 37 H 1.09001 * 109.49788 * 65.38935 * 11 10 9 38 38 H 1.09004 * 109.49427 * 185.48410 * 11 10 9 39 39 H 1.09002 * 109.35237 * 301.13159 * 12 11 10 40 40 H 1.08998 * 109.44678 * 181.23497 * 12 11 10 41 41 H 0.97000 * 120.00051 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.58887 * 246.16372 * 23 9 7 43 43 H 1.08993 * 109.58874 * 6.59310 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.1680 -1.2153 2.1062 7 6 1.6583 -1.9082 3.3075 8 8 2.8502 -1.9408 3.5470 9 7 0.7866 -2.5069 4.1431 10 6 -0.6616 -2.3798 3.9308 11 6 -1.3095 -1.8709 5.2223 12 6 -0.9197 -2.7921 6.3809 13 6 0.6001 -2.7779 6.5610 14 1 0.9338 -1.7586 6.7558 15 6 0.9774 -3.6618 7.7218 16 1 0.2100 -4.1799 8.2777 17 6 2.3022 -3.8090 8.0741 18 7 3.2368 -3.1785 7.3968 19 14 2.7698 -4.9042 9.5134 20 1 2.3127 -6.2920 9.2484 21 1 4.2448 -4.8926 9.6855 22 1 2.1236 -4.3980 10.7509 23 6 1.2666 -3.2990 5.2838 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8902 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7218 -1.2489 33 1 3.0941 -0.8087 1.4016 34 1 0.1062 -1.1159 1.9357 35 1 -0.8519 -1.6729 3.1233 36 1 -1.0796 -3.3524 3.6710 37 1 -0.9600 -0.8596 5.4306 38 1 -2.3935 -1.8654 5.1079 39 1 -1.2498 -3.8076 6.1618 40 1 -1.3971 -2.4448 7.2971 41 1 4.1688 -3.2818 7.6449 42 1 1.0054 -4.3469 5.1368 43 1 2.3485 -3.1983 5.3691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855254550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:29 Heat of formation + Delta-G solvation = -40.137796 kcal Electronic energy + Delta-G solvation = -20714.238149 eV Core-core repulsion = 17758.938537 eV Total energy + Delta-G solvation = -2955.299612 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.45640 -37.82748 -36.50272 -33.35282 -31.76287 -31.24997 -29.65276 -27.48627 -27.37253 -25.32911 -24.85968 -22.58224 -21.74161 -19.72697 -18.44406 -17.81700 -16.98007 -16.11753 -15.29878 -14.84380 -14.49800 -14.41845 -14.11465 -14.08118 -13.64862 -13.19112 -12.83271 -12.56243 -12.49702 -12.25272 -12.10743 -11.92126 -11.82743 -11.80856 -11.16430 -11.02049 -10.96287 -10.88460 -10.71798 -10.48949 -10.32229 -10.19574 -9.84781 -9.24133 -9.16953 -9.06738 -8.80858 -8.39402 -7.64340 -5.95619 -4.05090 1.75100 3.33917 3.39789 3.41119 3.83715 3.94134 4.45405 4.58445 4.68271 4.85000 5.10577 5.19890 5.33712 5.37287 5.46951 5.47757 5.52021 5.56179 5.62415 5.70958 5.72424 5.76580 5.88654 5.99451 6.04910 6.10550 6.16317 6.21258 6.34972 6.53556 6.64169 6.66948 6.73544 6.91324 7.01651 7.22660 7.37558 7.68962 7.92143 8.04922 8.35506 8.43276 8.96348 9.02335 9.60352 11.09391 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029738 B = 0.004529 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.319678 B = 6180.931828 C = 6823.262962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.073 4.073 6 C -0.210 4.210 7 C 0.533 3.467 8 O -0.543 6.543 9 N -0.603 5.603 10 C 0.108 3.892 11 C -0.134 4.134 12 C -0.110 4.110 13 C 0.040 3.960 14 H 0.028 0.972 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.880 5.880 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.112 3.888 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.264 0.736 42 H 0.041 0.959 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 6.025 -15.347 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.046 4.046 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.093 4.093 6 C -0.231 4.231 7 C 0.322 3.678 8 O -0.422 6.422 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.173 4.173 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.046 0.954 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.517 5.517 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.009 4.009 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.569 6.010 -15.203 17.618 hybrid contribution 0.137 -0.637 0.867 1.084 sum -6.432 5.374 -14.336 16.606 Atomic orbital electron populations 1.22000 0.94308 1.02132 1.01975 1.19737 0.95796 0.95511 0.93590 1.21823 1.01407 0.94358 1.01919 1.21822 1.01381 1.00316 0.95952 1.23605 1.00385 0.92465 0.92860 1.23048 1.00633 1.03077 0.96328 1.18552 0.86257 0.79468 0.83526 1.90784 1.15884 1.60673 1.74890 1.48395 1.05349 1.50797 1.28904 1.21669 0.81630 1.00506 0.97715 1.21958 0.98744 1.00463 0.96087 1.21628 0.99851 0.97577 0.95749 1.18960 0.88849 0.97521 0.92573 0.95359 1.21045 0.92205 1.28878 1.13978 0.92447 1.25058 0.96709 0.95684 0.96563 1.69892 1.00629 1.41714 1.39474 0.86658 0.77332 0.81083 0.82923 1.20255 1.21262 1.20295 1.22269 1.04362 0.91324 0.82910 0.92093 0.92426 0.92149 0.92254 0.92340 0.92292 0.92384 0.92332 0.92272 0.85781 0.85380 0.91011 0.92227 0.92181 0.92235 0.93239 0.93068 0.92614 0.94099 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.13 37.16 0.26 -1.05 16 2 C -0.05 -0.47 0.99 -155.66 -0.15 -0.62 16 3 C -0.14 -1.27 8.46 37.16 0.31 -0.96 16 4 C -0.14 -1.23 8.46 37.16 0.31 -0.92 16 5 C -0.07 -1.02 8.33 -36.13 -0.30 -1.32 16 6 C -0.21 -3.26 8.31 -37.81 -0.31 -3.57 16 7 C 0.53 11.23 7.63 -12.66 -0.10 11.14 16 8 O -0.54 -13.88 15.65 5.27 0.08 -13.80 16 9 N -0.60 -12.59 2.97 -174.16 -0.52 -13.11 16 10 C 0.11 1.74 6.31 -3.71 -0.02 1.72 16 11 C -0.13 -2.21 6.09 -26.60 -0.16 -2.38 16 12 C -0.11 -2.24 5.10 -26.67 -0.14 -2.38 16 13 C 0.04 1.02 2.26 -91.65 -0.21 0.81 16 14 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.52 -14.42 8.56 -34.44 -0.29 -14.71 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -26.20 11.39 55.43 0.63 -25.57 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 C 0.11 2.79 5.41 -3.70 -0.02 2.77 16 24 H 0.06 0.56 7.50 -51.93 -0.39 0.17 16 25 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.06 0.54 7.50 -51.93 -0.39 0.15 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.12 1.93 7.50 -52.49 -0.39 1.54 16 34 H 0.13 1.63 3.60 -52.49 -0.19 1.44 16 35 H 0.07 0.94 5.37 -51.93 -0.28 0.66 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.12 3.58 5.11 -51.93 -0.27 3.32 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -31.81 335.84 -8.04 -39.85 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.37 Total: 0.84 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.91 Total: -9.79 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.11 Total: -38.68 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.81 -8.04 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.290 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds