Wall clock time and date at job start Mon Mar 30 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47028 * 2 1 4 4 C 1.52998 * 109.47250 * 239.99412 * 2 1 3 5 5 C 1.50699 * 109.46983 * 119.99844 * 2 1 3 6 6 C 1.32999 * 119.99862 * 359.97438 * 5 2 1 7 7 C 1.47099 * 119.99684 * 180.02562 * 6 5 2 8 8 O 1.21612 * 120.00549 * 4.98640 * 7 6 5 9 9 N 1.34779 * 119.99724 * 184.97633 * 7 6 5 10 10 C 1.46923 * 120.63223 * 354.77053 * 9 7 6 11 11 C 1.53187 * 108.89137 * 233.55194 * 10 9 7 12 12 C 1.53066 * 109.29931 * 305.57459 * 11 10 9 13 13 C 1.53044 * 109.65797 * 61.15415 * 12 11 10 14 14 H 1.09007 * 109.49404 * 58.65045 * 13 12 11 15 15 C 1.50699 * 109.50295 * 178.74821 * 13 12 11 16 16 H 1.08001 * 119.99707 * 359.83499 * 15 13 12 17 17 C 1.37874 * 120.00213 * 179.83920 * 15 13 12 18 18 N 1.31518 * 120.00126 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99957 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47122 * 60.00262 * 19 17 15 21 21 H 1.48504 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47313 * 300.00105 * 19 17 15 23 23 C 1.46934 * 120.62814 * 174.78328 * 9 7 6 24 24 H 1.08993 * 109.47253 * 300.00244 * 1 2 3 25 25 H 1.09008 * 109.47026 * 60.00626 * 1 2 3 26 26 H 1.09005 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46968 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46739 * 299.99015 * 3 2 1 29 29 H 1.08993 * 109.47302 * 59.99786 * 3 2 1 30 30 H 1.08997 * 109.47272 * 300.00283 * 4 2 1 31 31 H 1.09006 * 109.46848 * 60.00474 * 4 2 1 32 32 H 1.09004 * 109.47307 * 180.02562 * 4 2 1 33 33 H 1.08000 * 119.99896 * 180.02562 * 5 2 1 34 34 H 1.07995 * 120.00248 * 359.97438 * 6 5 2 35 35 H 1.08997 * 109.58842 * 353.41627 * 10 9 7 36 36 H 1.09006 * 109.58326 * 113.69555 * 10 9 7 37 37 H 1.09001 * 109.49788 * 65.38935 * 11 10 9 38 38 H 1.09004 * 109.49427 * 185.48410 * 11 10 9 39 39 H 1.09002 * 109.35237 * 301.13159 * 12 11 10 40 40 H 1.08998 * 109.44678 * 181.23497 * 12 11 10 41 41 H 0.97000 * 120.00051 * 179.97438 * 18 17 15 42 42 H 1.08996 * 109.58887 * 246.16372 * 23 9 7 43 43 H 1.08993 * 109.58874 * 6.59310 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.1680 -1.2153 2.1062 7 6 1.6583 -1.9082 3.3075 8 8 2.8502 -1.9408 3.5470 9 7 0.7866 -2.5069 4.1431 10 6 -0.6616 -2.3798 3.9308 11 6 -1.3095 -1.8709 5.2223 12 6 -0.9197 -2.7921 6.3809 13 6 0.6001 -2.7779 6.5610 14 1 0.9338 -1.7586 6.7558 15 6 0.9774 -3.6618 7.7218 16 1 0.2100 -4.1799 8.2777 17 6 2.3022 -3.8090 8.0741 18 7 3.2368 -3.1785 7.3968 19 14 2.7698 -4.9042 9.5134 20 1 2.3127 -6.2920 9.2484 21 1 4.2448 -4.8926 9.6855 22 1 2.1236 -4.3980 10.7509 23 6 1.2666 -3.2990 5.2838 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8902 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1301 -0.7218 -1.2489 33 1 3.0941 -0.8087 1.4016 34 1 0.1062 -1.1159 1.9357 35 1 -0.8519 -1.6729 3.1233 36 1 -1.0796 -3.3524 3.6710 37 1 -0.9600 -0.8596 5.4306 38 1 -2.3935 -1.8654 5.1079 39 1 -1.2498 -3.8076 6.1618 40 1 -1.3971 -2.4448 7.2971 41 1 4.1688 -3.2818 7.6449 42 1 1.0054 -4.3469 5.1368 43 1 2.3485 -3.1983 5.3691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:29 Heat of formation + Delta-G solvation = -58.973772 kcal Electronic energy + Delta-G solvation = -20715.054938 eV Core-core repulsion = 17758.938537 eV Total energy + Delta-G solvation = -2956.116401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.04668 -38.90280 -38.09843 -35.31627 -33.50705 -32.51459 -31.40203 -28.17539 -28.07717 -27.26739 -26.48311 -24.00044 -23.35751 -21.30614 -19.81880 -19.07527 -18.63595 -17.95957 -16.88379 -16.51151 -16.02217 -15.73907 -15.28116 -15.08531 -15.00293 -14.70971 -14.53557 -14.25174 -13.85720 -13.50076 -13.18660 -13.14802 -12.86955 -12.83734 -12.64183 -12.51915 -12.29335 -12.24391 -11.92109 -11.90907 -11.78426 -11.64372 -11.56013 -11.14146 -10.96169 -10.60698 -10.50058 -10.39056 -9.36570 -8.11667 -6.30094 0.46394 1.39308 1.41494 1.49830 2.26918 2.40166 2.42015 3.15968 3.55140 3.85581 3.94327 4.10986 4.11355 4.18396 4.24076 4.40620 4.46391 4.59876 4.75085 4.78701 4.81404 4.81950 4.85472 4.93597 5.03800 5.05815 5.08965 5.16359 5.23606 5.24461 5.27141 5.31764 5.34810 5.45417 5.52161 5.53906 5.59211 5.68538 5.88656 5.99355 6.31723 6.71779 6.83390 7.35746 7.41137 8.91462 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029738 B = 0.004529 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.319678 B = 6180.931828 C = 6823.262962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.053 4.053 6 C -0.220 4.220 7 C 0.520 3.480 8 O -0.607 6.607 9 N -0.607 5.607 10 C 0.102 3.898 11 C -0.127 4.127 12 C -0.105 4.105 13 C 0.038 3.962 14 H -0.017 1.017 15 C -0.538 4.538 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.917 5.917 19 Si 0.960 3.040 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.267 1.267 23 C 0.123 3.877 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.166 0.834 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.259 0.741 42 H 0.036 0.964 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.392 6.360 -17.155 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.044 4.044 3 C -0.195 4.195 4 C -0.194 4.194 5 C -0.073 4.073 6 C -0.240 4.240 7 C 0.312 3.688 8 O -0.490 6.490 9 N -0.338 5.338 10 C -0.020 4.020 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.019 3.981 14 H 0.001 0.999 15 C -0.577 4.577 16 H 0.082 0.918 17 C -0.191 4.191 18 N -0.556 5.556 19 Si 0.785 3.215 20 H -0.190 1.190 21 H -0.215 1.215 22 H -0.192 1.192 23 C 0.001 3.999 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.183 0.817 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.627 6.347 -17.018 20.556 hybrid contribution 1.111 -0.702 1.387 1.911 sum -8.516 5.645 -15.631 18.674 Atomic orbital electron populations 1.22026 0.92557 1.02792 1.03145 1.19838 0.97227 0.95527 0.91798 1.21844 1.01133 0.93730 1.02828 1.21836 1.01120 1.00335 0.96117 1.23905 0.99061 0.90565 0.93804 1.22893 1.02476 1.04284 0.94317 1.19557 0.85527 0.78960 0.84777 1.90746 1.18661 1.63084 1.76552 1.48448 1.07854 1.49957 1.27525 1.22076 0.78147 1.02890 0.98854 1.21935 1.01648 0.98575 0.94335 1.21521 0.95611 0.99307 0.97874 1.18901 0.92722 0.94320 0.92184 0.99928 1.21517 0.92510 1.28889 1.14767 0.91825 1.25947 0.96768 0.97105 0.99308 1.70113 1.00641 1.43562 1.41280 0.85581 0.76745 0.79511 0.79666 1.19042 1.21495 1.19176 1.21691 1.01690 0.91701 0.84860 0.92041 0.90248 0.91728 0.92875 0.89853 0.92952 0.92650 0.89923 0.92865 0.88486 0.81699 0.87050 0.90120 0.93297 0.87383 0.92352 0.92939 0.93182 0.94573 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 7.13 71.98 0.51 -1.52 16 2 C -0.04 -0.78 0.99 -52.93 -0.05 -0.83 16 3 C -0.14 -2.23 8.46 71.98 0.61 -1.62 16 4 C -0.14 -2.09 8.46 71.98 0.61 -1.49 16 5 C -0.05 -1.44 8.33 24.52 0.20 -1.24 16 6 C -0.22 -6.57 8.31 23.43 0.19 -6.38 16 7 C 0.52 22.62 7.63 86.57 0.66 23.28 16 8 O -0.61 -33.30 15.65 -4.07 -0.06 -33.36 16 9 N -0.61 -25.70 2.97 -823.18 -2.45 -28.15 16 10 C 0.10 2.98 6.31 86.36 0.55 3.52 16 11 C -0.13 -3.82 6.09 30.68 0.19 -3.63 16 12 C -0.11 -4.17 5.10 30.63 0.16 -4.02 16 13 C 0.04 1.99 2.26 -11.46 -0.03 1.97 16 14 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 15 C -0.54 -30.54 8.56 25.60 0.22 -30.32 16 16 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 17 C 0.01 0.46 5.30 84.65 0.45 0.91 16 18 N -0.92 -57.83 11.39 21.45 0.24 -57.59 16 19 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.12 6.46 5.41 86.36 0.47 6.92 16 24 H 0.06 0.86 7.50 -2.39 -0.02 0.84 16 25 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 0.86 7.50 -2.38 -0.02 0.84 16 27 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.10 3.18 7.50 -2.91 -0.02 3.15 16 34 H 0.17 3.60 3.60 -2.91 -0.01 3.59 16 35 H 0.11 2.39 5.37 -2.39 -0.01 2.38 16 36 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 4.67 5.11 -2.39 -0.01 4.65 16 Total: -1.00 -76.37 335.84 5.46 -70.91 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.96 Total: 15.34 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 4.74 Total: -14.44 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -2.20 Total: -85.74 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.06 Total: -33.36 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.37 5.46 -70.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.940 kcal (2) G-P(sol) polarization free energy of solvation -76.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds