Wall clock time and date at job start Mon Mar 30 2020 08:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.53001 * 109.47203 * 119.99641 * 2 1 3 5 5 C 1.53000 * 109.46886 * 184.99990 * 4 2 1 6 6 C 1.50703 * 109.46912 * 180.02562 * 5 4 2 7 7 C 1.34515 * 125.79060 * 90.00255 * 6 5 4 8 8 C 1.41380 * 106.83832 * 179.97438 * 7 6 5 9 9 C 1.34506 * 106.84493 * 359.97438 * 8 7 6 10 10 O 1.34306 * 125.78568 * 269.69593 * 6 5 4 11 11 N 1.46894 * 109.47135 * 240.00537 * 2 1 3 12 12 C 1.46897 * 111.00560 * 84.99520 * 11 2 1 13 13 C 1.53003 * 109.47138 * 179.97438 * 12 11 2 14 14 C 1.53002 * 109.46967 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47159 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47121 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00164 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00031 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99898 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00207 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47028 * 60.00473 * 20 18 16 22 22 H 1.48497 * 109.47458 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47222 * 300.00386 * 20 18 16 24 24 H 1.09005 * 109.47243 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47476 * 299.99962 * 1 2 3 26 26 H 1.08996 * 109.47654 * 60.00238 * 1 2 3 27 27 H 1.09001 * 109.46652 * 65.00335 * 4 2 1 28 28 H 1.08992 * 109.47514 * 305.00424 * 4 2 1 29 29 H 1.09002 * 109.47398 * 300.00496 * 5 4 2 30 30 H 1.09001 * 109.47194 * 60.00677 * 5 4 2 31 31 H 1.07996 * 126.58016 * 0.03378 * 7 6 5 32 32 H 1.08006 * 126.57610 * 179.97438 * 8 7 6 33 33 H 1.08006 * 125.79583 * 179.97438 * 9 8 7 34 34 H 1.00904 * 110.99933 * 208.95423 * 11 2 1 35 35 H 1.08996 * 109.47033 * 300.00382 * 12 11 2 36 36 H 1.08998 * 109.46787 * 60.00044 * 12 11 2 37 37 H 1.08992 * 109.47264 * 300.00329 * 13 12 11 38 38 H 1.08998 * 109.46965 * 60.00497 * 13 12 11 39 39 H 1.08996 * 109.47286 * 300.00776 * 14 13 12 40 40 H 1.09007 * 109.46963 * 60.00528 * 14 13 12 41 41 H 1.09005 * 109.47174 * 300.00410 * 15 14 13 42 42 H 1.08994 * 109.47221 * 59.99963 * 15 14 13 43 43 H 0.97002 * 119.99993 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3240 2.5438 7 6 4.4192 -2.6204 2.6147 8 6 4.8278 -2.8616 3.9465 9 6 4.7016 -1.6982 4.6097 10 8 4.2449 -0.7692 3.7540 11 7 2.0196 -0.6924 -1.1995 12 6 2.0823 0.2227 -2.3469 13 6 2.5961 -0.5328 -3.5742 14 6 2.6608 0.4202 -4.7695 15 6 3.1740 -0.3354 -5.9969 16 6 3.2383 0.6034 -7.1740 17 1 2.9424 1.6355 -7.0583 18 6 3.6750 0.1445 -8.3986 19 7 4.0350 -1.1126 -8.5396 20 14 3.7541 1.3079 -9.8579 21 1 4.6748 2.4307 -9.5465 22 1 4.2523 0.5746 -11.0492 23 1 2.3976 1.8433 -10.1383 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.7516 -1.7714 1.2056 28 1 1.6054 -0.2617 2.1370 29 1 3.9994 -1.0726 0.4259 30 1 3.8531 0.4371 1.3573 31 1 4.3952 -3.3388 1.8087 32 1 5.1747 -3.8001 4.3533 33 1 4.9314 -1.5375 5.6527 34 1 2.9173 -1.1204 -1.0288 35 1 1.0869 0.6164 -2.5525 36 1 2.7587 1.0463 -2.1182 37 1 3.5915 -0.9261 -3.3683 38 1 1.9201 -1.3566 -3.8030 39 1 1.6652 0.8132 -4.9751 40 1 3.3367 1.2443 -4.5409 41 1 4.1696 -0.7288 -5.7914 42 1 2.4980 -1.1593 -6.2253 43 1 4.3419 -1.4355 -9.4013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385368952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:06:04 Heat of formation + Delta-G solvation = -22.044642 kcal Electronic energy + Delta-G solvation = -19090.974710 eV Core-core repulsion = 16136.459676 eV Total energy + Delta-G solvation = -2954.515034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.78543 -38.07608 -35.14086 -33.58373 -33.00600 -32.12114 -30.49134 -28.21401 -27.59857 -24.59480 -23.78914 -21.98952 -21.35989 -20.73980 -20.50928 -19.79437 -17.61190 -16.36800 -16.17375 -16.01714 -15.61700 -14.89661 -14.50391 -14.42563 -14.06497 -13.57492 -13.06751 -13.01379 -12.79433 -12.69928 -12.51604 -12.26246 -12.05494 -11.74011 -11.55688 -11.36331 -11.08358 -11.01867 -10.83186 -10.49017 -10.46168 -10.39004 -10.14610 -9.60163 -9.22971 -8.98610 -8.68046 -8.37061 -8.30116 -5.95650 -3.97864 1.49113 2.39005 2.74700 3.35522 3.39690 3.42253 4.15814 4.31908 4.49510 4.65980 4.68701 4.78608 4.82903 5.02070 5.22740 5.25297 5.39552 5.42165 5.45926 5.56347 5.58796 5.62514 5.69535 5.77674 5.80096 5.88043 5.92941 6.00095 6.16016 6.23218 6.27725 6.31753 6.54519 6.85437 6.90258 6.99404 7.08634 7.26307 7.44520 7.73183 7.89534 8.05567 8.48357 9.09505 9.65767 11.15675 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.029023 B = 0.002561 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.511693 B =10931.646157 C =11519.944551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.082 3.918 3 H 0.044 0.956 4 C -0.117 4.117 5 C -0.046 4.046 6 C -0.005 4.005 7 C -0.211 4.211 8 C -0.212 4.212 9 C -0.049 4.049 10 O -0.178 6.178 11 N -0.688 5.688 12 C 0.059 3.941 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.053 0.947 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.201 0.799 34 H 0.338 0.662 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -0.782 26.217 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 H 0.062 0.938 4 C -0.155 4.155 5 C -0.083 4.083 6 C -0.055 4.055 7 C -0.231 4.231 8 C -0.231 4.231 9 C -0.117 4.117 10 O -0.074 6.074 11 N -0.321 5.321 12 C -0.070 4.070 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.217 0.783 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.437 -0.852 25.983 26.111 hybrid contribution 1.022 0.799 -0.563 1.414 sum -1.415 -0.053 25.420 25.460 Atomic orbital electron populations 1.21775 0.94383 1.02407 1.01185 1.21528 0.96191 0.95851 0.89178 0.93819 1.21811 0.93156 1.02498 0.98032 1.20254 0.96399 1.00706 0.90970 1.22442 1.04022 0.93189 0.85852 1.21656 1.06930 0.96148 0.98324 1.21854 1.07180 0.99549 0.94539 1.24004 1.04154 0.87538 0.95971 1.84017 1.65546 1.39029 1.18812 1.60608 1.33350 1.33874 1.04274 1.22124 1.00588 0.93667 0.90595 1.21639 1.00514 0.99296 0.93923 1.21587 1.00191 0.97717 0.95200 1.19085 0.96173 0.95415 0.90913 1.21256 1.43485 0.96426 0.94711 0.92840 1.25037 0.95535 0.95096 0.98887 1.69960 1.44731 1.14390 1.24501 0.86670 0.78388 0.80948 0.82046 1.20292 1.21310 1.20264 0.91952 0.92889 0.92456 0.90355 0.90976 0.88658 0.90076 0.83317 0.83526 0.78258 0.84273 0.91228 0.95597 0.92821 0.91651 0.93468 0.93716 0.96758 0.96618 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.41 37.15 0.35 -1.02 16 2 C 0.08 0.82 2.65 -67.72 -0.18 0.64 16 3 H 0.04 0.45 7.80 -51.92 -0.40 0.04 16 4 C -0.12 -1.02 4.79 -26.73 -0.13 -1.14 16 5 C -0.05 -0.40 5.58 -27.88 -0.16 -0.55 16 6 C 0.00 -0.05 6.57 -35.62 -0.23 -0.28 16 7 C -0.21 -2.07 10.81 -39.70 -0.43 -2.50 16 8 C -0.21 -1.85 10.91 -39.71 -0.43 -2.28 16 9 C -0.05 -0.41 12.09 29.41 0.36 -0.05 16 10 O -0.18 -1.86 10.65 5.68 0.06 -1.79 16 11 N -0.69 -8.22 6.31 -106.73 -0.67 -8.90 16 12 C 0.06 0.82 5.48 -3.82 -0.02 0.80 16 13 C -0.12 -1.97 5.47 -26.73 -0.15 -2.12 16 14 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 15 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 16 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 20 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.78 6.43 -51.93 -0.33 0.45 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.20 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.34 3.73 6.47 -39.29 -0.25 3.48 16 35 H 0.07 0.99 7.44 -51.93 -0.39 0.60 16 36 H 0.03 0.35 8.05 -51.93 -0.42 -0.06 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -31.67 352.99 -8.93 -40.60 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.64 Total: -1.13 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -1.71 Total: -24.35 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.06 Total: -35.60 kcal Atomic # 8 Polarization: -1.86 SS G_CDS: 0.06 Total: -1.79 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.67 -8.93 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385368952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.556 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds