Wall clock time and date at job start Mon Mar 30 2020 07:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.43429 * 2 1 4 4 C 1.54266 * 110.48333 * 122.54025 * 2 1 3 5 5 C 1.53869 * 106.60029 * 142.42057 * 4 2 1 6 6 C 1.54266 * 106.60080 * 359.97438 * 5 4 2 7 7 H 1.08991 * 110.48773 * 95.06564 * 6 5 4 8 8 C 1.50700 * 110.48800 * 217.71872 * 6 5 4 9 9 O 1.21278 * 120.00338 * 114.77634 * 8 6 5 10 10 N 1.34777 * 119.99406 * 294.76950 * 8 6 5 11 11 C 1.46496 * 119.99724 * 180.02562 * 10 8 6 12 12 H 1.09001 * 110.01987 * 325.69939 * 11 10 8 13 13 C 1.54269 * 110.03722 * 87.09258 * 11 10 8 14 14 C 1.55008 * 104.13963 * 95.68603 * 13 11 10 15 15 C 1.54894 * 102.75489 * 37.95216 * 14 13 11 16 16 H 1.08992 * 110.48268 * 80.72419 * 15 14 13 17 17 C 1.50704 * 110.48518 * 203.37176 * 15 14 13 18 18 H 1.08001 * 119.99749 * 114.77842 * 17 15 14 19 19 C 1.37871 * 119.99977 * 294.77176 * 17 15 14 20 20 N 1.31514 * 120.00081 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00204 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46795 * 60.00324 * 21 19 17 23 23 H 1.48503 * 109.47431 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47163 * 300.00586 * 21 19 17 25 25 C 1.53879 * 110.03503 * 204.30956 * 11 10 8 26 26 C 1.54891 * 110.59714 * 237.37668 * 2 1 3 27 27 H 1.08999 * 109.46979 * 298.92238 * 1 2 3 28 28 H 1.09007 * 109.46464 * 58.91241 * 1 2 3 29 29 H 1.08990 * 109.47320 * 178.91246 * 1 2 3 30 30 H 1.09000 * 110.03049 * 261.70715 * 4 2 1 31 31 H 1.09001 * 110.03650 * 23.13198 * 4 2 1 32 32 H 1.08999 * 110.03445 * 119.28652 * 5 4 2 33 33 H 1.09009 * 110.03169 * 240.71589 * 5 4 2 34 34 H 0.97000 * 120.00560 * 0.02562 * 10 8 6 35 35 H 1.09001 * 110.48704 * 214.35562 * 13 11 10 36 36 H 1.09002 * 110.48214 * 336.99691 * 13 11 10 37 37 H 1.09008 * 110.76036 * 279.63463 * 14 13 11 38 38 H 1.08992 * 110.74984 * 156.26707 * 14 13 11 39 39 H 0.97004 * 120.00499 * 179.97438 * 20 19 17 40 40 H 1.09003 * 110.02802 * 0.02562 * 25 11 10 41 41 H 1.09001 * 110.03346 * 121.37618 * 25 11 10 42 42 H 1.08997 * 110.75776 * 321.64253 * 26 2 1 43 43 H 1.08996 * 110.75513 * 84.83404 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0698 -0.7773 1.2183 5 6 3.3184 -1.5370 0.7370 6 6 3.4934 -1.1953 -0.7572 7 1 4.1910 -0.3669 -0.8799 8 6 3.9677 -2.4038 -1.5225 9 8 3.2549 -2.9058 -2.3656 10 7 5.1840 -2.9266 -1.2700 11 6 5.6453 -4.1010 -2.0144 12 1 4.8036 -4.7577 -2.2344 13 6 6.3289 -3.6609 -3.3255 14 6 7.8380 -3.6278 -2.9731 15 6 7.9983 -4.8539 -2.0401 16 1 8.0765 -5.7704 -2.6248 17 6 9.2054 -4.6876 -1.1533 18 1 9.0814 -4.5933 -0.0846 19 6 10.4680 -4.6561 -1.7063 20 7 10.6189 -4.7705 -3.0078 21 14 11.9643 -4.4507 -0.6071 22 1 12.0249 -5.5748 0.3615 23 1 13.1938 -4.4475 -1.4400 24 1 11.8637 -3.1662 0.1311 25 6 6.7061 -4.8596 -1.1976 26 6 2.0749 -0.7817 -1.2212 27 1 -0.3633 0.4970 0.8995 28 1 -0.3632 0.5307 -0.8802 29 1 -0.3633 -1.0274 -0.0195 30 1 2.3389 -0.0834 2.0146 31 1 1.3184 -1.4819 1.5746 32 1 4.1934 -1.2117 1.2997 33 1 3.1728 -2.6103 0.8596 34 1 5.7540 -2.5253 -0.5955 35 1 6.1375 -4.3851 -4.1173 36 1 5.9838 -2.6703 -3.6216 37 1 8.0921 -2.7070 -2.4479 38 1 8.4466 -3.7427 -3.8699 39 1 11.5071 -4.7480 -3.3969 40 1 6.8773 -4.3542 -0.2472 41 1 6.3790 -5.8843 -1.0211 42 1 1.4627 -1.6609 -1.4215 43 1 2.1249 -0.1391 -2.1001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452561904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:31 Heat of formation + Delta-G solvation = -79.555092 kcal Electronic energy + Delta-G solvation = -20451.390495 eV Core-core repulsion = 17494.381621 eV Total energy + Delta-G solvation = -2957.008874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03180 -38.02318 -36.72924 -33.55071 -32.16715 -31.28602 -29.01617 -28.15494 -27.17169 -25.30851 -23.80553 -22.04163 -20.03294 -19.88650 -19.39070 -18.94759 -16.82484 -16.56240 -16.13370 -15.47930 -14.83982 -14.52273 -14.13654 -13.95117 -13.71280 -13.38390 -13.28004 -12.79262 -12.33089 -12.29578 -11.73664 -11.72012 -11.28968 -11.05549 -11.01477 -10.99338 -10.89924 -10.81232 -10.75389 -10.60038 -10.53928 -10.37853 -9.94116 -9.58531 -9.37719 -9.20467 -8.83110 -8.53670 -8.35782 -6.01924 -4.05273 2.93156 3.29915 3.35478 3.37026 3.56353 4.37464 4.41798 4.42495 4.62412 5.04879 5.14039 5.24285 5.27812 5.30018 5.41996 5.44217 5.47246 5.61571 5.63719 5.67541 5.76188 5.83647 5.84819 5.88055 5.97277 6.12331 6.16250 6.31604 6.34342 6.37095 6.62270 6.65069 6.76561 6.94701 6.95834 7.26673 7.35010 7.69256 7.84974 7.92352 8.01977 8.42230 8.57842 8.97129 9.58725 11.07480 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.003868 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.357747 B = 7237.601184 C = 7714.004868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.116 4.116 7 H 0.098 0.902 8 C 0.515 3.485 9 O -0.550 6.550 10 N -0.713 5.713 11 C 0.139 3.861 12 H 0.074 0.926 13 C -0.136 4.136 14 C -0.099 4.099 15 C 0.048 3.952 16 H 0.033 0.967 17 C -0.515 4.515 18 H 0.054 0.946 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.122 4.122 26 C -0.099 4.099 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.399 0.601 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.260 0.740 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.262 8.964 6.576 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.152 4.152 6 C -0.138 4.138 7 H 0.116 0.884 8 C 0.301 3.699 9 O -0.428 6.428 10 N -0.363 5.363 11 C 0.035 3.965 12 H 0.092 0.908 13 C -0.174 4.174 14 C -0.137 4.137 15 C 0.030 3.970 16 H 0.051 0.949 17 C -0.553 4.553 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.160 4.160 26 C -0.137 4.137 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.234 0.766 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.619 8.567 5.829 18.743 hybrid contribution 1.320 0.346 0.849 1.607 sum -14.298 8.913 6.678 18.124 Atomic orbital electron populations 1.21788 0.94945 1.01918 1.01427 1.21997 0.95615 0.99217 0.94982 0.90807 1.22200 0.97020 0.98810 0.97579 1.22102 0.98657 1.01014 0.93466 1.22186 0.99173 0.96637 0.95789 0.88413 1.20493 0.81466 0.84889 0.83027 1.90655 1.55575 1.62249 1.34297 1.46324 1.17210 1.31757 1.41057 1.21761 0.96615 0.85812 0.92319 0.90785 1.22858 0.98817 0.99771 0.95992 1.22476 0.90980 0.99635 1.00624 1.19456 0.90157 0.94565 0.92851 0.94933 1.21128 0.90819 1.50316 0.93064 0.92782 1.24983 0.98877 0.95141 0.94920 1.69949 1.22760 1.49999 1.09956 0.86712 0.82379 0.78621 0.80567 1.20334 1.21366 1.20352 1.22605 0.96229 0.98067 0.99124 1.22420 0.93927 1.00347 0.96960 0.92830 0.92682 0.92526 0.91737 0.91595 0.91005 0.91303 0.76647 0.92120 0.93232 0.93527 0.91532 0.93005 0.92073 0.92905 0.90050 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.12 37.16 0.34 -0.79 16 2 C -0.10 -0.87 3.45 -88.96 -0.31 -1.18 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -1.01 6.37 -25.62 -0.16 -1.18 16 5 C -0.11 -1.13 6.35 -25.62 -0.16 -1.29 16 6 C -0.12 -1.35 3.25 -90.12 -0.29 -1.64 16 7 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 8 C 0.52 8.03 6.99 -10.99 -0.08 7.95 16 9 O -0.55 -10.54 15.38 5.56 0.09 -10.46 16 10 N -0.71 -11.20 5.02 -52.72 -0.26 -11.46 16 11 C 0.14 2.54 3.23 -66.81 -0.22 2.33 16 12 H 0.07 1.40 7.59 -51.93 -0.39 1.01 16 13 C -0.14 -2.67 6.54 -25.01 -0.16 -2.84 16 14 C -0.10 -2.26 5.75 -24.67 -0.14 -2.40 16 15 C 0.05 1.16 2.72 -90.11 -0.25 0.92 16 16 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.52 -13.67 8.46 -34.44 -0.29 -13.96 16 18 H 0.05 1.40 7.54 -52.49 -0.40 1.00 16 19 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 20 N -0.89 -25.22 12.29 55.43 0.68 -24.54 16 21 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.12 -2.41 6.13 -25.61 -0.16 -2.57 16 26 C -0.10 -1.10 5.37 -24.75 -0.13 -1.23 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.75 7.83 -51.92 -0.41 0.35 16 34 H 0.40 5.57 8.31 -40.82 -0.34 5.23 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 37 H 0.05 1.08 8.05 -51.92 -0.42 0.66 16 38 H 0.07 1.67 7.55 -51.93 -0.39 1.28 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.06 1.17 7.13 -51.93 -0.37 0.80 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.05 7.38 -51.93 -0.38 0.67 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -29.45 337.77 -9.25 -38.69 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.71 Total: 3.09 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.11 Total: -16.27 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.42 Total: -36.00 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.45 -9.25 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452561904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.864 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds