Wall clock time and date at job start Mon Mar 30 2020 07:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.43429 * 2 1 4 4 C 1.54266 * 110.48333 * 122.54025 * 2 1 3 5 5 C 1.53869 * 106.60029 * 142.42057 * 4 2 1 6 6 C 1.54266 * 106.60080 * 359.97438 * 5 4 2 7 7 H 1.08991 * 110.48773 * 95.06564 * 6 5 4 8 8 C 1.50700 * 110.48800 * 217.71872 * 6 5 4 9 9 O 1.21278 * 120.00338 * 114.77634 * 8 6 5 10 10 N 1.34777 * 119.99406 * 294.76950 * 8 6 5 11 11 C 1.46496 * 119.99724 * 180.02562 * 10 8 6 12 12 H 1.09001 * 110.01987 * 325.69939 * 11 10 8 13 13 C 1.54269 * 110.03722 * 87.09258 * 11 10 8 14 14 C 1.55008 * 104.13963 * 95.68603 * 13 11 10 15 15 C 1.54894 * 102.75489 * 37.95216 * 14 13 11 16 16 H 1.08992 * 110.48268 * 80.72419 * 15 14 13 17 17 C 1.50704 * 110.48518 * 203.37176 * 15 14 13 18 18 H 1.08001 * 119.99749 * 114.77842 * 17 15 14 19 19 C 1.37871 * 119.99977 * 294.77176 * 17 15 14 20 20 N 1.31514 * 120.00081 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00204 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46795 * 60.00324 * 21 19 17 23 23 H 1.48503 * 109.47431 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47163 * 300.00586 * 21 19 17 25 25 C 1.53879 * 110.03503 * 204.30956 * 11 10 8 26 26 C 1.54891 * 110.59714 * 237.37668 * 2 1 3 27 27 H 1.08999 * 109.46979 * 298.92238 * 1 2 3 28 28 H 1.09007 * 109.46464 * 58.91241 * 1 2 3 29 29 H 1.08990 * 109.47320 * 178.91246 * 1 2 3 30 30 H 1.09000 * 110.03049 * 261.70715 * 4 2 1 31 31 H 1.09001 * 110.03650 * 23.13198 * 4 2 1 32 32 H 1.08999 * 110.03445 * 119.28652 * 5 4 2 33 33 H 1.09009 * 110.03169 * 240.71589 * 5 4 2 34 34 H 0.97000 * 120.00560 * 0.02562 * 10 8 6 35 35 H 1.09001 * 110.48704 * 214.35562 * 13 11 10 36 36 H 1.09002 * 110.48214 * 336.99691 * 13 11 10 37 37 H 1.09008 * 110.76036 * 279.63463 * 14 13 11 38 38 H 1.08992 * 110.74984 * 156.26707 * 14 13 11 39 39 H 0.97004 * 120.00499 * 179.97438 * 20 19 17 40 40 H 1.09003 * 110.02802 * 0.02562 * 25 11 10 41 41 H 1.09001 * 110.03346 * 121.37618 * 25 11 10 42 42 H 1.08997 * 110.75776 * 321.64253 * 26 2 1 43 43 H 1.08996 * 110.75513 * 84.83404 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0698 -0.7773 1.2183 5 6 3.3184 -1.5370 0.7370 6 6 3.4934 -1.1953 -0.7572 7 1 4.1910 -0.3669 -0.8799 8 6 3.9677 -2.4038 -1.5225 9 8 3.2549 -2.9058 -2.3656 10 7 5.1840 -2.9266 -1.2700 11 6 5.6453 -4.1010 -2.0144 12 1 4.8036 -4.7577 -2.2344 13 6 6.3289 -3.6609 -3.3255 14 6 7.8380 -3.6278 -2.9731 15 6 7.9983 -4.8539 -2.0401 16 1 8.0765 -5.7704 -2.6248 17 6 9.2054 -4.6876 -1.1533 18 1 9.0814 -4.5933 -0.0846 19 6 10.4680 -4.6561 -1.7063 20 7 10.6189 -4.7705 -3.0078 21 14 11.9643 -4.4507 -0.6071 22 1 12.0249 -5.5748 0.3615 23 1 13.1938 -4.4475 -1.4400 24 1 11.8637 -3.1662 0.1311 25 6 6.7061 -4.8596 -1.1976 26 6 2.0749 -0.7817 -1.2212 27 1 -0.3633 0.4970 0.8995 28 1 -0.3632 0.5307 -0.8802 29 1 -0.3633 -1.0274 -0.0195 30 1 2.3389 -0.0834 2.0146 31 1 1.3184 -1.4819 1.5746 32 1 4.1934 -1.2117 1.2997 33 1 3.1728 -2.6103 0.8596 34 1 5.7540 -2.5253 -0.5955 35 1 6.1375 -4.3851 -4.1173 36 1 5.9838 -2.6703 -3.6216 37 1 8.0921 -2.7070 -2.4479 38 1 8.4466 -3.7427 -3.8699 39 1 11.5071 -4.7480 -3.3969 40 1 6.8773 -4.3542 -0.2472 41 1 6.3790 -5.8843 -1.0211 42 1 1.4627 -1.6609 -1.4215 43 1 2.1249 -0.1391 -2.1001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452561904.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:31 Heat of formation + Delta-G solvation = -95.520800 kcal Electronic energy + Delta-G solvation = -20452.082820 eV Core-core repulsion = 17494.381621 eV Total energy + Delta-G solvation = -2957.701199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24055 -39.24450 -38.08379 -35.21959 -33.82195 -32.26025 -30.00816 -29.80015 -28.75613 -26.32907 -25.55492 -23.12300 -21.36147 -20.96042 -20.73968 -20.42451 -18.51012 -17.94497 -17.13174 -16.84301 -16.59310 -16.06141 -15.42503 -15.29627 -14.62074 -14.51547 -14.36266 -14.01140 -13.94361 -13.57101 -13.11101 -12.94548 -12.75268 -12.56286 -12.47052 -12.41134 -12.25422 -12.04479 -11.74624 -11.70614 -11.65957 -11.46200 -11.45299 -11.23610 -11.07342 -10.82695 -10.65068 -10.43567 -9.94275 -8.09106 -6.19045 1.44660 1.45412 1.52827 1.70082 2.31791 2.46296 3.21974 3.53481 3.61373 3.81236 3.95149 4.01897 4.21269 4.26579 4.38083 4.46359 4.51806 4.62388 4.69167 4.73343 4.75673 4.78386 4.91455 4.94137 4.99574 5.05175 5.09931 5.14351 5.18317 5.18821 5.26572 5.31826 5.37238 5.40074 5.43407 5.60562 5.66641 5.71894 5.90741 5.99855 6.38773 6.67401 6.92097 7.33564 7.48662 8.99658 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.003868 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.357747 B = 7237.601184 C = 7714.004868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.087 0.913 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.111 4.111 7 H 0.117 0.883 8 C 0.514 3.486 9 O -0.589 6.589 10 N -0.708 5.708 11 C 0.150 3.850 12 H 0.071 0.929 13 C -0.126 4.126 14 C -0.088 4.088 15 C 0.039 3.961 16 H -0.001 1.001 17 C -0.528 4.528 18 H 0.060 0.940 19 C 0.010 3.990 20 N -0.922 5.922 21 Si 0.953 3.047 22 H -0.272 1.272 23 H -0.290 1.290 24 H -0.268 1.268 25 C -0.109 4.109 26 C -0.101 4.101 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.410 0.590 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.035 0.965 39 H 0.259 0.741 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.802 10.539 8.768 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.106 0.894 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.132 4.132 7 H 0.135 0.865 8 C 0.302 3.698 9 O -0.469 6.469 10 N -0.358 5.358 11 C 0.045 3.955 12 H 0.089 0.911 13 C -0.164 4.164 14 C -0.126 4.126 15 C 0.021 3.979 16 H 0.017 0.983 17 C -0.566 4.566 18 H 0.078 0.922 19 C -0.189 4.189 20 N -0.561 5.561 21 Si 0.779 3.221 22 H -0.197 1.197 23 H -0.216 1.216 24 H -0.193 1.193 25 C -0.147 4.147 26 C -0.139 4.139 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.164 10.157 8.054 20.720 hybrid contribution 1.470 -0.179 0.120 1.486 sum -14.693 9.978 8.174 19.552 Atomic orbital electron populations 1.21787 0.94397 1.01643 1.02230 1.21986 0.96090 0.99472 0.93647 0.89435 1.22208 0.96286 0.98980 0.97869 1.22123 1.00189 1.00489 0.92183 1.22246 0.99584 0.95035 0.96380 0.86467 1.21221 0.80662 0.85444 0.82503 1.90642 1.56521 1.63634 1.36128 1.46213 1.17627 1.31015 1.40987 1.21434 0.95854 0.86679 0.91532 0.91098 1.22747 0.96588 1.00160 0.96933 1.22238 0.92633 0.98782 0.98932 1.19434 0.91874 0.93416 0.93206 0.98320 1.21528 0.91785 1.49605 0.93646 0.92180 1.25788 1.01893 0.95060 0.96124 1.70095 1.23169 1.51197 1.11649 0.85685 0.78649 0.78985 0.78765 1.19694 1.21601 1.19254 1.22418 0.94329 0.99116 0.98881 1.22421 0.93513 0.99764 0.98221 0.91413 0.92541 0.93351 0.89877 0.91675 0.89215 0.92648 0.75336 0.92287 0.92630 0.94017 0.94615 0.93242 0.90900 0.92102 0.92379 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.12 71.98 0.66 -1.30 16 2 C -0.09 -1.40 3.45 -9.72 -0.03 -1.43 16 3 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.12 -1.64 6.37 31.32 0.20 -1.44 16 5 C -0.11 -1.91 6.35 31.32 0.20 -1.71 16 6 C -0.11 -2.35 3.25 -10.47 -0.03 -2.38 16 7 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 8 C 0.51 15.38 6.99 87.66 0.61 15.99 16 9 O -0.59 -22.43 15.38 -3.02 -0.05 -22.47 16 10 N -0.71 -21.10 5.02 -439.10 -2.21 -23.31 16 11 C 0.15 5.37 3.23 45.72 0.15 5.52 16 12 H 0.07 2.64 7.59 -2.39 -0.02 2.62 16 13 C -0.13 -4.94 6.54 31.71 0.21 -4.73 16 14 C -0.09 -4.06 5.75 31.93 0.18 -3.88 16 15 C 0.04 1.92 2.72 -10.46 -0.03 1.89 16 16 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 17 C -0.53 -27.93 8.46 25.60 0.22 -27.71 16 18 H 0.06 3.04 7.54 -2.91 -0.02 3.02 16 19 C 0.01 0.54 5.35 84.65 0.45 1.00 16 20 N -0.92 -53.38 12.29 21.45 0.26 -53.11 16 21 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 C -0.11 -4.23 6.13 31.32 0.19 -4.03 16 26 C -0.10 -2.11 5.37 31.88 0.17 -1.94 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.94 7.84 -2.39 -0.02 0.93 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.10 7.83 -2.38 -0.02 1.09 16 34 H 0.41 10.49 8.31 -92.71 -0.77 9.72 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 37 H 0.04 1.94 8.05 -2.38 -0.02 1.92 16 38 H 0.03 1.85 7.55 -2.39 -0.02 1.83 16 39 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.07 2.64 7.13 -2.39 -0.02 2.62 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 1.49 7.38 -2.39 -0.02 1.47 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -63.81 337.77 3.38 -60.43 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.20 Total: 20.01 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 3.14 Total: -26.17 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -1.94 Total: -76.42 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -63.81 3.38 -60.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452561904.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.088 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds