Wall clock time and date at job start Mon Mar 30 2020 08:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46689 * 2 1 4 4 C 1.50695 * 109.47069 * 240.00132 * 2 1 3 5 5 H 1.08004 * 120.00286 * 244.11447 * 4 2 1 6 6 C 1.37885 * 119.99939 * 64.11794 * 4 2 1 7 7 N 1.31514 * 119.99947 * 7.02256 * 6 4 2 8 8 Si 1.86798 * 119.99934 * 187.02820 * 6 4 2 9 9 H 1.48504 * 109.47359 * 94.96214 * 8 6 4 10 10 H 1.48503 * 109.47258 * 214.96680 * 8 6 4 11 11 H 1.48500 * 109.47365 * 334.96487 * 8 6 4 12 12 N 1.46502 * 109.47226 * 120.00248 * 2 1 3 13 13 C 1.34776 * 119.99956 * 275.00252 * 12 2 1 14 14 O 1.21287 * 119.99869 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00186 * 180.02562 * 13 12 2 16 16 H 1.08995 * 109.46836 * 24.72032 * 15 13 12 17 17 C 1.53000 * 109.46833 * 264.72222 * 15 13 12 18 18 C 1.53004 * 109.47038 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47122 * 59.99742 * 18 17 15 20 20 C 1.52997 * 109.47041 * 299.99936 * 19 18 17 21 21 C 1.53000 * 109.47156 * 144.72070 * 15 13 12 22 22 H 1.09003 * 109.47015 * 60.00355 * 21 15 13 23 23 C 1.52993 * 109.47389 * 300.00106 * 21 15 13 24 24 C 1.53008 * 117.49821 * 245.59374 * 23 21 15 25 25 C 1.52995 * 117.50317 * 176.97148 * 23 21 15 26 26 H 1.09005 * 109.46954 * 174.55450 * 1 2 3 27 27 H 1.09003 * 109.47179 * 294.55383 * 1 2 3 28 28 H 1.09001 * 109.47188 * 54.55724 * 1 2 3 29 29 H 0.97000 * 119.99432 * 180.02562 * 7 6 4 30 30 H 0.96997 * 120.00099 * 95.00256 * 12 2 1 31 31 H 1.08994 * 109.47398 * 60.00116 * 17 15 13 32 32 H 1.09003 * 109.47486 * 299.99735 * 17 15 13 33 33 H 1.09009 * 109.46559 * 299.99688 * 18 17 15 34 34 H 1.08999 * 109.47072 * 180.02562 * 18 17 15 35 35 H 1.09007 * 109.46846 * 180.02562 * 19 18 17 36 36 H 1.08995 * 109.47280 * 60.00464 * 19 18 17 37 37 H 1.09003 * 109.47747 * 300.00202 * 20 19 18 38 38 H 1.09005 * 109.46692 * 180.02562 * 20 19 18 39 39 H 1.08996 * 115.54933 * 31.29690 * 23 21 15 40 40 H 1.08995 * 117.49442 * 359.97438 * 24 23 21 41 41 H 1.08996 * 117.49603 * 145.01632 * 24 23 21 42 42 H 1.08999 * 117.50160 * 214.98197 * 25 23 21 43 43 H 1.09005 * 117.49785 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5973 -1.6256 -1.1328 6 6 1.7707 -0.1918 -2.4810 7 7 1.2051 0.9898 -2.5977 8 14 2.2194 -1.1676 -4.0093 9 1 1.0364 -1.9380 -4.4698 10 1 2.6519 -0.2362 -5.0821 11 1 3.3268 -2.1044 -3.6911 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8590 1.1585 2.4115 15 6 2.6500 -0.7286 3.5874 16 1 3.2517 -1.5876 3.2906 17 6 1.4603 -1.2039 4.4239 18 6 1.9709 -1.9245 5.6734 19 6 2.8260 -0.9641 6.5024 20 6 4.0156 -0.4888 5.6658 21 6 3.5055 0.2313 4.4166 22 1 2.9036 1.0903 4.7135 23 6 4.6950 0.7067 3.5802 24 6 6.0932 0.2846 4.0365 25 6 5.6366 1.7344 4.2110 26 1 -0.3633 -1.0231 -0.0975 27 1 -0.3634 0.4271 0.9348 28 1 -0.3633 0.5959 -0.8372 29 1 1.0207 1.3543 -3.4775 30 1 2.2491 -1.6318 1.1526 31 1 0.8509 -1.8878 3.8332 32 1 0.8585 -0.3450 4.7208 33 1 2.5729 -2.7835 5.3768 34 1 1.1233 -2.2635 6.2691 35 1 3.1901 -1.4776 7.3923 36 1 2.2240 -0.1052 6.7989 37 1 4.6177 -1.3478 5.3693 38 1 4.6251 0.1950 6.2566 39 1 4.5161 0.7798 2.5075 40 1 6.1654 -0.3313 4.9328 41 1 6.8342 0.0799 3.2638 42 1 6.0773 2.4836 3.5533 43 1 5.4083 2.0723 5.2219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592755544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:18:01 Heat of formation + Delta-G solvation = -65.287513 kcal Electronic energy + Delta-G solvation = -21049.019053 eV Core-core repulsion = 18092.628868 eV Total energy + Delta-G solvation = -2956.390186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39945 -39.33545 -37.07407 -36.60679 -34.29973 -32.36461 -31.13870 -30.52458 -27.33651 -25.10905 -24.62325 -23.28222 -22.68930 -21.21466 -21.10665 -20.08343 -18.90222 -17.51750 -17.23886 -16.79709 -16.16955 -15.85583 -15.46816 -15.08116 -14.94388 -14.76409 -14.33155 -14.21874 -13.90807 -13.57143 -13.20441 -12.92297 -12.88550 -12.72718 -12.56942 -12.42972 -12.36767 -12.29549 -12.14878 -11.96369 -11.48193 -11.43348 -11.31177 -11.15142 -10.87180 -10.63806 -10.62055 -10.36353 -9.73345 -8.21641 -6.36321 1.42799 1.43488 1.54599 1.88364 2.35162 2.66188 2.94201 3.10520 3.56408 3.76018 3.84934 4.07997 4.11539 4.15297 4.27750 4.35378 4.42320 4.50467 4.55637 4.63497 4.71570 4.76233 4.81598 4.84486 4.93937 4.98210 5.02540 5.12173 5.20998 5.25019 5.28606 5.30874 5.34056 5.37797 5.41344 5.47857 5.59818 5.62081 5.62732 5.90732 6.03155 6.72641 7.01386 7.31347 7.61276 8.87614 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.005056 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.122348 B = 5536.645989 C = 6057.483784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.708 5.708 13 C 0.503 3.497 14 O -0.602 6.602 15 C -0.088 4.088 16 H 0.104 0.896 17 C -0.106 4.106 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.030 4.030 22 H 0.054 0.946 23 C -0.171 4.171 24 C -0.161 4.161 25 C -0.181 4.181 26 H 0.046 0.954 27 H 0.015 0.985 28 H 0.048 0.952 29 H 0.265 0.735 30 H 0.403 0.597 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 -8.380 17.555 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.356 5.356 13 C 0.291 3.709 14 O -0.484 6.484 15 C -0.109 4.109 16 H 0.123 0.877 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.144 4.144 21 C -0.049 4.049 22 H 0.073 0.927 23 C -0.189 4.189 24 C -0.197 4.197 25 C -0.218 4.218 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.143 0.857 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.349 -7.425 17.434 19.985 hybrid contribution -0.138 0.082 -1.632 1.640 sum 6.210 -7.342 15.803 18.499 Atomic orbital electron populations 1.21815 0.98457 0.99844 0.98307 1.18298 0.90873 0.91975 0.82295 0.98638 1.21532 1.36049 1.10007 0.90889 0.90892 1.25840 0.94795 0.95495 1.02464 1.70131 1.43483 1.17480 1.24780 0.85338 0.78810 0.78257 0.77973 1.19653 1.21290 1.18519 1.46366 1.65328 1.14071 1.09849 1.21400 0.76899 0.87008 0.85593 1.90614 1.53238 1.18535 1.85993 1.21355 0.98566 0.99132 0.91852 0.87738 1.21479 0.95523 1.00181 0.97231 1.21515 1.00248 0.98248 0.94662 1.21586 0.96454 0.99189 0.98507 1.21695 0.98177 1.00391 0.94178 1.20411 0.93324 0.96650 0.94542 0.92731 1.22250 0.92434 1.06254 0.97986 1.23218 0.95303 0.97219 1.03974 1.22967 1.03553 0.92940 1.02301 0.93498 0.96592 0.93297 0.92596 0.76270 0.91411 0.93252 0.90277 0.90422 0.89558 0.92801 0.89985 0.90622 0.92189 0.85660 0.89112 0.89914 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.49 9.24 71.98 0.67 -5.82 16 2 C 0.27 14.47 2.44 44.24 0.11 14.58 16 3 H 0.00 -0.28 7.56 -2.39 -0.02 -0.30 16 4 C -0.55 -29.67 8.68 25.60 0.22 -29.45 16 5 H 0.07 3.69 7.73 -2.91 -0.02 3.67 16 6 C 0.01 0.78 5.26 84.66 0.45 1.22 16 7 N -0.92 -54.60 11.99 21.45 0.26 -54.34 16 8 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 N -0.71 -30.59 5.07 -446.09 -2.26 -32.85 16 13 C 0.50 20.89 5.50 87.66 0.48 21.37 16 14 O -0.60 -30.96 15.84 -3.05 -0.05 -31.01 16 15 C -0.09 -2.53 2.05 -11.54 -0.02 -2.56 16 16 H 0.10 2.57 8.11 -2.39 -0.02 2.55 16 17 C -0.11 -2.59 5.19 30.60 0.16 -2.43 16 18 C -0.11 -1.80 5.92 30.60 0.18 -1.62 16 19 C -0.12 -1.88 5.92 30.59 0.18 -1.69 16 20 C -0.11 -1.90 3.78 30.58 0.12 -1.78 16 21 C -0.03 -0.82 1.70 -10.81 -0.02 -0.84 16 22 H 0.05 1.78 7.86 -2.39 -0.02 1.76 16 23 C -0.17 -5.05 5.42 -10.79 -0.06 -5.11 16 24 C -0.16 -3.46 9.53 30.60 0.29 -3.17 16 25 C -0.18 -4.48 9.92 30.59 0.30 -4.17 16 26 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 27 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 2.74 6.83 -2.39 -0.02 2.73 16 29 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.40 14.68 8.50 -92.71 -0.79 13.89 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.24 7.13 -2.39 -0.02 1.22 16 38 H 0.08 1.19 7.14 -2.38 -0.02 1.17 16 39 H 0.06 2.32 7.10 -2.39 -0.02 2.30 16 40 H 0.13 2.02 5.83 -2.39 -0.01 2.00 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.11 2.28 7.80 -2.38 -0.02 2.26 16 Total: -1.00 -69.70 335.63 3.22 -66.48 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.19 Total: 28.49 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 3.05 Total: -21.48 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.00 Total: -87.19 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.05 Total: -31.01 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.70 3.22 -66.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.190 kcal (2) G-P(sol) polarization free energy of solvation -69.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds