Wall clock time and date at job start Mon Mar 30 2020 08:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47086 * 2 1 4 4 C 1.50699 * 109.47425 * 119.99872 * 2 1 3 5 5 H 1.08007 * 119.99618 * 119.99875 * 4 2 1 6 6 C 1.37872 * 120.00100 * 300.00233 * 4 2 1 7 7 N 1.31519 * 119.99811 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00341 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47351 * 89.99789 * 8 6 4 10 10 H 1.48493 * 109.47453 * 210.00277 * 8 6 4 11 11 H 1.48503 * 109.46703 * 329.99895 * 8 6 4 12 12 C 1.50704 * 109.46925 * 240.00386 * 2 1 3 13 13 O 1.21272 * 119.99808 * 295.40995 * 12 2 1 14 14 N 1.34777 * 119.99911 * 115.41345 * 12 2 1 15 15 C 1.46493 * 120.00059 * 358.57564 * 14 12 2 16 16 C 1.53005 * 117.50177 * 313.88666 * 15 14 12 17 17 C 1.52998 * 59.99999 * 252.51269 * 16 15 14 18 18 C 1.46497 * 119.99627 * 178.57297 * 14 12 2 19 19 C 1.53000 * 109.47509 * 299.99924 * 18 14 12 20 20 C 1.53000 * 109.47241 * 180.02562 * 19 18 14 21 21 C 1.53007 * 109.46882 * 300.00072 * 20 19 18 22 22 C 1.53000 * 109.47241 * 59.99928 * 21 20 19 23 23 C 1.53000 * 109.47241 * 299.99852 * 22 21 20 24 24 H 1.09000 * 109.46962 * 303.50333 * 1 2 3 25 25 H 1.08999 * 109.47377 * 63.50017 * 1 2 3 26 26 H 1.08993 * 109.47159 * 183.50939 * 1 2 3 27 27 H 0.97006 * 119.99925 * 179.97438 * 7 6 4 28 28 H 1.09004 * 115.55513 * 99.59835 * 15 14 12 29 29 H 1.09006 * 117.49532 * 0.02562 * 16 15 14 30 30 H 1.08994 * 117.50039 * 145.02005 * 16 15 14 31 31 H 1.09003 * 117.49773 * 252.50654 * 17 16 15 32 32 H 1.09002 * 117.50169 * 107.48742 * 17 16 15 33 33 H 1.09001 * 109.47034 * 179.97438 * 18 14 12 34 34 H 1.09004 * 109.46673 * 60.00049 * 19 18 14 35 35 H 1.08996 * 109.46755 * 300.00132 * 19 18 14 36 36 H 1.08993 * 109.47111 * 59.99670 * 20 19 18 37 37 H 1.08999 * 109.47121 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47135 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.46668 * 299.99877 * 21 20 19 40 40 H 1.08996 * 109.46755 * 179.97438 * 22 21 20 41 41 H 1.09004 * 109.46673 * 60.00048 * 22 21 20 42 42 H 1.08993 * 109.47111 * 300.00330 * 23 22 21 43 43 H 1.09000 * 109.46918 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8019 0.8744 2.6994 10 1 0.9773 1.9953 3.9071 11 1 0.8492 2.1773 1.4924 12 6 2.0323 -0.7103 -1.2306 13 8 1.8095 -1.8928 -1.3815 14 7 2.7291 -0.0315 -2.1633 15 6 2.9715 1.4036 -1.9961 16 6 1.7859 2.2765 -1.5796 17 6 2.3264 2.3517 -3.0090 18 6 3.2443 -0.7287 -3.3442 19 6 4.2002 -1.8393 -2.9043 20 6 4.7387 -2.5671 -4.1377 21 6 3.5732 -3.1771 -4.9191 22 6 2.6172 -2.0665 -5.3591 23 6 2.0788 -1.3388 -4.1256 24 1 -0.3633 0.5673 0.8569 25 1 -0.3634 0.4585 -0.9197 26 1 -0.3633 -1.0257 0.0629 27 1 1.9034 -0.5280 4.4376 28 1 3.9549 1.6726 -1.6105 29 1 0.8257 1.7829 -1.4296 30 1 1.9892 3.1198 -0.9197 31 1 2.8852 3.2445 -3.2895 32 1 1.7217 1.9076 -3.7997 33 1 3.7766 -0.0215 -3.9803 34 1 3.6675 -2.5465 -2.2684 35 1 5.0306 -1.4046 -2.3480 36 1 5.2714 -1.8597 -4.7732 37 1 5.4194 -3.3586 -3.8243 38 1 3.9568 -3.6960 -5.7976 39 1 3.0405 -3.8845 -4.2836 40 1 1.7873 -2.5011 -5.9161 41 1 3.1501 -1.3591 -5.9946 42 1 1.5461 -2.0461 -3.4902 43 1 1.3981 -0.5473 -4.4391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596905170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:13:19 Heat of formation + Delta-G solvation = -15.858048 kcal Electronic energy + Delta-G solvation = -21827.004962 eV Core-core repulsion = 18872.758199 eV Total energy + Delta-G solvation = -2954.246763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12514 -37.51954 -36.70482 -33.83827 -32.72382 -31.20677 -30.55793 -28.88585 -25.18981 -23.91914 -22.48484 -22.24475 -22.03761 -21.20445 -19.66847 -17.95058 -16.79774 -16.42139 -15.79313 -15.11684 -14.68188 -14.56083 -13.97439 -13.79861 -13.75650 -13.48289 -13.05419 -12.71633 -12.36712 -12.18390 -12.03023 -11.95737 -11.53311 -11.32658 -11.17391 -10.98732 -10.90584 -10.72772 -10.50299 -10.44054 -10.37189 -10.15088 -9.96496 -9.84252 -9.60467 -9.07494 -8.57756 -8.37543 -8.09618 -6.08054 -4.07473 3.24527 3.30633 3.36134 3.44476 3.60572 3.89654 4.37110 4.85554 4.91777 5.01534 5.03866 5.06512 5.14015 5.24448 5.32886 5.45967 5.58068 5.69349 5.69830 5.70933 5.75437 5.82617 5.88272 5.97534 6.12179 6.14560 6.20225 6.25499 6.27625 6.30600 6.38424 6.47850 6.49486 6.57310 6.63770 6.70453 6.84513 7.18666 7.27650 7.60987 8.09309 8.50072 8.98371 9.14018 9.50945 11.05032 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.006724 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.445301 B = 4163.138553 C = 4716.977681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.013 4.013 3 H 0.059 0.941 4 C -0.500 4.500 5 H 0.078 0.922 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.264 1.264 12 C 0.542 3.458 13 O -0.537 6.537 14 N -0.600 5.600 15 C 0.076 3.924 16 C -0.175 4.175 17 C -0.189 4.189 18 C 0.161 3.839 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.137 4.137 24 H 0.046 0.954 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.265 0.735 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 4.999 -16.505 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 H 0.077 0.923 4 C -0.538 4.538 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.189 1.189 12 C 0.334 3.666 13 O -0.413 6.413 14 N -0.334 5.334 15 C -0.029 4.029 16 C -0.213 4.213 17 C -0.227 4.227 18 C 0.058 3.942 19 C -0.176 4.176 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.150 4.150 23 C -0.175 4.175 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.907 4.339 -16.366 17.038 hybrid contribution -0.529 0.893 0.315 1.085 sum 1.378 5.232 -16.051 16.938 Atomic orbital electron populations 1.22073 0.97366 1.01958 0.98428 1.19618 0.93187 0.98298 0.92333 0.92334 1.20690 1.32249 1.13382 0.87529 0.90435 1.24931 0.95700 0.96705 0.95614 1.69885 1.45483 1.40186 0.97892 0.86884 0.80786 0.83746 0.77049 1.20534 1.22378 1.18861 1.21214 0.75371 0.87040 0.83009 1.90497 1.57162 1.16055 1.77579 1.47750 1.56395 1.06928 1.22349 1.21531 0.97537 0.79650 1.04203 1.23491 0.99103 1.01853 0.96812 1.23366 1.04408 1.01247 0.93696 1.20836 0.94039 0.93353 0.86012 1.21972 0.98788 0.98823 0.98043 1.21463 0.97380 0.99408 0.96737 1.21544 0.96738 0.97996 0.99486 1.21457 0.98714 0.97589 0.97195 1.21997 0.98077 1.00637 0.96813 0.93536 0.95168 0.91831 0.92538 0.86917 0.87391 0.87786 0.88410 0.88808 0.90681 0.89261 0.92237 0.92544 0.92090 0.92526 0.91632 0.92240 0.92530 0.89260 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.05 37.16 0.30 -2.81 16 2 C -0.01 -0.31 1.20 -92.92 -0.11 -0.42 16 3 H 0.06 1.30 3.56 -51.93 -0.18 1.12 16 4 C -0.50 -14.36 8.98 -34.44 -0.31 -14.67 16 5 H 0.08 2.52 7.95 -52.48 -0.42 2.10 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 8 Si 0.89 21.34 24.34 -169.99 -4.14 17.21 16 9 H -0.28 -6.61 6.90 56.52 0.39 -6.22 16 10 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -5.79 6.53 56.52 0.37 -5.42 16 12 C 0.54 12.02 5.68 -10.98 -0.06 11.96 16 13 O -0.54 -13.23 13.02 5.56 0.07 -13.16 16 14 N -0.60 -10.68 2.73 -158.58 -0.43 -11.12 16 15 C 0.08 1.15 5.47 -67.93 -0.37 0.78 16 16 C -0.18 -2.56 7.71 -26.73 -0.21 -2.77 16 17 C -0.19 -2.26 10.38 -26.73 -0.28 -2.54 16 18 C 0.16 2.47 2.50 -67.93 -0.17 2.30 16 19 C -0.14 -2.20 5.13 -26.73 -0.14 -2.34 16 20 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 21 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 22 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 23 C -0.14 -2.03 5.13 -26.73 -0.14 -2.16 16 24 H 0.05 1.03 3.36 -51.93 -0.17 0.86 16 25 H 0.03 0.56 6.72 -51.93 -0.35 0.21 16 26 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 29 H 0.11 1.76 4.97 -51.93 -0.26 1.50 16 30 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 34 H 0.09 1.75 6.22 -51.93 -0.32 1.43 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.62 6.12 -51.93 -0.32 1.30 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -31.50 319.01 -8.08 -39.58 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.11 Total: 4.81 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.06 Total: -15.34 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.34 Total: -37.91 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.16 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.21 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.50 -8.08 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596905170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.726 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds