Wall clock time and date at job start Mon Mar 30 2020 08:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47011 * 2 1 4 4 C 1.50702 * 109.47116 * 240.00472 * 2 1 3 5 5 H 1.08001 * 119.99637 * 240.00260 * 4 2 1 6 6 C 1.37876 * 120.00266 * 59.99540 * 4 2 1 7 7 N 1.31520 * 119.99771 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00218 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47033 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47081 * 300.00240 * 8 6 4 11 11 H 1.48501 * 109.46895 * 60.00195 * 8 6 4 12 12 C 1.50694 * 109.47509 * 120.00448 * 2 1 3 13 13 O 1.21280 * 120.00530 * 87.79777 * 12 2 1 14 14 N 1.34779 * 119.99776 * 267.80696 * 12 2 1 15 15 C 1.47402 * 126.02540 * 5.26843 * 14 12 2 16 16 C 1.54482 * 107.16111 * 181.48911 * 15 14 12 17 17 H 1.08992 * 110.77208 * 264.46289 * 16 15 14 18 18 C 1.53000 * 110.77129 * 141.23305 * 16 15 14 19 19 C 1.55959 * 102.65600 * 22.75614 * 16 15 14 20 20 H 1.09002 * 112.76900 * 202.50636 * 19 16 15 21 21 C 1.53015 * 106.58656 * 78.69109 * 19 16 15 22 22 C 1.52685 * 110.68433 * 196.82827 * 21 19 16 23 23 C 1.53248 * 108.67028 * 61.97058 * 22 21 19 24 24 C 1.52866 * 108.42732 * 296.81147 * 23 22 21 25 25 C 1.46524 * 126.01994 * 184.96738 * 14 12 2 26 26 H 1.08996 * 108.47766 * 270.32240 * 25 14 12 27 27 H 1.08998 * 109.46855 * 293.77723 * 1 2 3 28 28 H 1.08995 * 109.47251 * 53.77956 * 1 2 3 29 29 H 1.09002 * 109.46974 * 173.77750 * 1 2 3 30 30 H 0.97004 * 119.99758 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.90095 * 300.87527 * 15 14 12 32 32 H 1.08995 * 109.89705 * 62.10383 * 15 14 12 33 33 H 1.09000 * 109.46592 * 61.45717 * 18 16 15 34 34 H 1.09001 * 109.46692 * 181.45053 * 18 16 15 35 35 H 1.08991 * 109.47279 * 301.45651 * 18 16 15 36 36 H 1.09006 * 109.23205 * 317.13689 * 21 19 16 37 37 H 1.08999 * 109.23607 * 76.51684 * 21 19 16 38 38 H 1.08998 * 109.60464 * 181.72620 * 22 21 19 39 39 H 1.08993 * 109.60315 * 302.05323 * 22 21 19 40 40 H 1.09003 * 109.67482 * 56.54515 * 23 22 21 41 41 H 1.09000 * 109.67323 * 177.08025 * 23 22 21 42 42 H 1.09001 * 109.12542 * 179.64398 * 24 23 22 43 43 H 1.08994 * 109.12455 * 298.79817 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.8268 -0.4196 -5.2205 10 1 3.8063 -1.1207 -4.0083 11 1 1.8258 -2.5200 -4.0079 12 6 2.0324 -0.7105 1.2303 13 8 2.1966 -1.9120 1.2123 14 7 2.2992 -0.0106 2.3509 15 6 2.0463 1.4270 2.5560 16 6 2.5484 1.7804 3.9735 17 1 1.7302 1.7472 4.6928 18 6 3.2217 3.1543 3.9839 19 6 3.5839 0.6502 4.2610 20 1 3.7560 0.4967 5.3263 21 6 4.8632 1.0292 3.5119 22 6 5.7875 -0.1787 3.3778 23 6 5.0704 -1.2565 2.5576 24 6 3.8289 -1.7044 3.3288 25 6 2.8860 -0.5462 3.5820 26 1 2.0786 -0.8907 4.2281 27 1 -0.3633 0.4143 0.9404 28 1 -0.3633 0.6072 -0.8290 29 1 -0.3633 -1.0216 -0.1114 30 1 0.7088 1.1615 -3.4844 31 1 2.5917 2.0093 1.8133 32 1 0.9783 1.6304 2.4791 33 1 2.4987 3.9153 3.6902 34 1 3.5900 3.3708 4.9866 35 1 4.0557 3.1554 3.2822 36 1 4.6028 1.3942 2.5183 37 1 5.3798 1.8175 4.0594 38 1 6.7051 0.1176 2.8695 39 1 6.0269 -0.5677 4.3674 40 1 4.7745 -0.8466 1.5919 41 1 5.7357 -2.1068 2.4077 42 1 3.3061 -2.4674 2.7521 43 1 4.1359 -2.1277 4.2852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597492483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:21 Heat of formation + Delta-G solvation = -55.736712 kcal Electronic energy + Delta-G solvation = -21973.666193 eV Core-core repulsion = 19017.690161 eV Total energy + Delta-G solvation = -2955.976032 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.55748 -37.62236 -35.02928 -33.65604 -32.98758 -30.68888 -29.24137 -28.85751 -26.14190 -25.15193 -23.16251 -22.91014 -21.59249 -20.19982 -19.12757 -17.79052 -16.23979 -15.92473 -15.82166 -15.14586 -14.79861 -14.33414 -14.02237 -13.37273 -13.26301 -13.11187 -12.82182 -12.47245 -12.30447 -12.15630 -12.10140 -11.83515 -11.48371 -11.31245 -11.14293 -10.93782 -10.87960 -10.66954 -10.63034 -10.47477 -10.32754 -10.18413 -10.00685 -9.80426 -9.74171 -8.97085 -8.45631 -8.17774 -7.88229 -6.01929 -4.04944 3.36087 3.38714 3.43503 3.73687 3.79255 4.47018 4.52317 4.71557 4.80456 5.13719 5.21527 5.31249 5.32784 5.42897 5.52107 5.55231 5.64242 5.72187 5.74479 5.79673 5.87820 5.94628 6.02662 6.06552 6.11791 6.21080 6.23495 6.34737 6.40246 6.49877 6.51838 6.67063 6.72968 6.76786 6.91058 7.05026 7.17558 7.53792 7.78876 8.01602 8.20654 8.48636 8.99262 9.32123 9.59570 11.05836 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022355 B = 0.006563 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.226306 B = 4265.439977 C = 4677.765105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.036 3.964 3 H 0.043 0.957 4 C -0.499 4.499 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.276 1.276 12 C 0.542 3.458 13 O -0.544 6.544 14 N -0.623 5.623 15 C 0.111 3.889 16 C -0.105 4.105 17 H 0.078 0.922 18 C -0.144 4.144 19 C -0.092 4.092 20 H 0.090 0.910 21 C -0.110 4.110 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.133 4.133 25 C 0.146 3.854 26 H 0.052 0.948 27 H 0.009 0.991 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 4.234 14.343 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.015 3.985 3 H 0.060 0.940 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.334 3.666 13 O -0.420 6.420 14 N -0.360 5.360 15 C -0.012 4.012 16 C -0.124 4.124 17 H 0.096 0.904 18 C -0.202 4.202 19 C -0.111 4.111 20 H 0.108 0.892 21 C -0.147 4.147 22 C -0.156 4.156 23 C -0.150 4.150 24 C -0.171 4.171 25 C 0.042 3.958 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.317 3.643 14.076 15.482 hybrid contribution 0.191 -0.294 -0.775 0.851 sum 5.508 3.349 13.301 14.781 Atomic orbital electron populations 1.21656 0.96320 1.00963 0.99440 1.18831 0.94150 0.96459 0.89052 0.93951 1.20990 1.31289 1.12344 0.89132 0.91557 1.24922 0.95094 0.95027 0.98987 1.69882 1.36951 1.22979 1.23602 0.86537 0.79175 0.79860 0.81764 1.21312 1.20265 1.20130 1.21667 0.74833 0.87315 0.82741 1.90451 1.53032 1.15252 1.83273 1.48607 1.64032 1.09445 1.13891 1.22065 1.00470 0.82697 0.96001 1.22479 0.98017 0.95233 0.96680 0.90350 1.21836 1.00950 0.95487 1.01893 1.22477 0.95010 0.94501 0.99151 0.89217 1.21565 0.94867 0.97403 1.00883 1.21544 0.97939 0.96304 0.99803 1.21430 0.96231 0.97845 0.99446 1.21534 0.96354 0.98809 1.00410 1.20998 0.94613 0.93617 0.86608 0.93005 0.97246 0.89249 0.94553 0.92911 0.91308 0.91779 0.92474 0.92586 0.91670 0.91235 0.92241 0.92462 0.92505 0.91408 0.92561 0.88369 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.86 37.16 0.33 -2.74 16 2 C 0.04 0.92 2.23 -92.92 -0.21 0.71 16 3 H 0.04 1.10 7.03 -51.93 -0.37 0.74 16 4 C -0.50 -14.27 8.32 -34.44 -0.29 -14.55 16 5 H 0.07 1.98 7.19 -52.49 -0.38 1.61 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.90 -25.32 11.39 55.43 0.63 -24.69 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.92 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.54 12.67 6.09 -10.99 -0.07 12.60 16 13 O -0.54 -14.10 13.67 5.56 0.08 -14.02 16 14 N -0.62 -11.59 2.99 -164.60 -0.49 -12.08 16 15 C 0.11 1.72 5.11 -2.77 -0.01 1.71 16 16 C -0.11 -1.23 3.35 -88.26 -0.30 -1.53 16 17 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.14 -1.42 8.43 37.16 0.31 -1.10 16 19 C -0.09 -1.12 3.49 -88.38 -0.31 -1.43 16 20 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.11 -1.35 3.64 -26.89 -0.10 -1.45 16 22 C -0.12 -1.50 5.93 -26.76 -0.16 -1.66 16 23 C -0.11 -1.78 5.89 -26.67 -0.16 -1.94 16 24 C -0.13 -2.16 4.87 -27.57 -0.13 -2.30 16 25 C 0.15 2.29 2.89 -68.03 -0.20 2.09 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.01 0.19 8.05 -51.93 -0.42 -0.23 16 28 H 0.09 2.33 6.26 -51.93 -0.33 2.00 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.07 1.11 7.01 -51.93 -0.36 0.75 16 32 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.67 6.00 -51.93 -0.31 0.36 16 36 H 0.07 1.01 6.29 -51.93 -0.33 0.68 16 37 H 0.06 0.62 7.35 -51.93 -0.38 0.24 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.31 7.51 -51.93 -0.39 0.92 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.94 5.66 -51.93 -0.29 1.65 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -30.24 319.42 -8.70 -38.94 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.33 Total: 0.11 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -1.38 Total: -9.99 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.14 Total: -36.77 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.24 -8.70 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597492483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.798 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds