Wall clock time and date at job start Mon Mar 30 2020 08:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47011 * 2 1 4 4 C 1.50702 * 109.47116 * 240.00472 * 2 1 3 5 5 H 1.08001 * 119.99637 * 240.00260 * 4 2 1 6 6 C 1.37876 * 120.00266 * 59.99540 * 4 2 1 7 7 N 1.31520 * 119.99771 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00218 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47033 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47081 * 300.00240 * 8 6 4 11 11 H 1.48501 * 109.46895 * 60.00195 * 8 6 4 12 12 C 1.50694 * 109.47509 * 120.00448 * 2 1 3 13 13 O 1.21280 * 120.00530 * 87.79777 * 12 2 1 14 14 N 1.34779 * 119.99776 * 267.80696 * 12 2 1 15 15 C 1.47402 * 126.02540 * 5.26843 * 14 12 2 16 16 C 1.54482 * 107.16111 * 181.48911 * 15 14 12 17 17 H 1.08992 * 110.77208 * 264.46289 * 16 15 14 18 18 C 1.53000 * 110.77129 * 141.23305 * 16 15 14 19 19 C 1.55959 * 102.65600 * 22.75614 * 16 15 14 20 20 H 1.09002 * 112.76900 * 202.50636 * 19 16 15 21 21 C 1.53015 * 106.58656 * 78.69109 * 19 16 15 22 22 C 1.52685 * 110.68433 * 196.82827 * 21 19 16 23 23 C 1.53248 * 108.67028 * 61.97058 * 22 21 19 24 24 C 1.52866 * 108.42732 * 296.81147 * 23 22 21 25 25 C 1.46524 * 126.01994 * 184.96738 * 14 12 2 26 26 H 1.08996 * 108.47766 * 270.32240 * 25 14 12 27 27 H 1.08998 * 109.46855 * 293.77723 * 1 2 3 28 28 H 1.08995 * 109.47251 * 53.77956 * 1 2 3 29 29 H 1.09002 * 109.46974 * 173.77750 * 1 2 3 30 30 H 0.97004 * 119.99758 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.90095 * 300.87527 * 15 14 12 32 32 H 1.08995 * 109.89705 * 62.10383 * 15 14 12 33 33 H 1.09000 * 109.46592 * 61.45717 * 18 16 15 34 34 H 1.09001 * 109.46692 * 181.45053 * 18 16 15 35 35 H 1.08991 * 109.47279 * 301.45651 * 18 16 15 36 36 H 1.09006 * 109.23205 * 317.13689 * 21 19 16 37 37 H 1.08999 * 109.23607 * 76.51684 * 21 19 16 38 38 H 1.08998 * 109.60464 * 181.72620 * 22 21 19 39 39 H 1.08993 * 109.60315 * 302.05323 * 22 21 19 40 40 H 1.09003 * 109.67482 * 56.54515 * 23 22 21 41 41 H 1.09000 * 109.67323 * 177.08025 * 23 22 21 42 42 H 1.09001 * 109.12542 * 179.64398 * 24 23 22 43 43 H 1.08994 * 109.12455 * 298.79817 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.8268 -0.4196 -5.2205 10 1 3.8063 -1.1207 -4.0083 11 1 1.8258 -2.5200 -4.0079 12 6 2.0324 -0.7105 1.2303 13 8 2.1966 -1.9120 1.2123 14 7 2.2992 -0.0106 2.3509 15 6 2.0463 1.4270 2.5560 16 6 2.5484 1.7804 3.9735 17 1 1.7302 1.7472 4.6928 18 6 3.2217 3.1543 3.9839 19 6 3.5839 0.6502 4.2610 20 1 3.7560 0.4967 5.3263 21 6 4.8632 1.0292 3.5119 22 6 5.7875 -0.1787 3.3778 23 6 5.0704 -1.2565 2.5576 24 6 3.8289 -1.7044 3.3288 25 6 2.8860 -0.5462 3.5820 26 1 2.0786 -0.8907 4.2281 27 1 -0.3633 0.4143 0.9404 28 1 -0.3633 0.6072 -0.8290 29 1 -0.3633 -1.0216 -0.1114 30 1 0.7088 1.1615 -3.4844 31 1 2.5917 2.0093 1.8133 32 1 0.9783 1.6304 2.4791 33 1 2.4987 3.9153 3.6902 34 1 3.5900 3.3708 4.9866 35 1 4.0557 3.1554 3.2822 36 1 4.6028 1.3942 2.5183 37 1 5.3798 1.8175 4.0594 38 1 6.7051 0.1176 2.8695 39 1 6.0269 -0.5677 4.3674 40 1 4.7745 -0.8466 1.5919 41 1 5.7357 -2.1068 2.4077 42 1 3.3061 -2.4674 2.7521 43 1 4.1359 -2.1277 4.2852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597492483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:20 Heat of formation + Delta-G solvation = -72.842511 kcal Electronic energy + Delta-G solvation = -21974.407956 eV Core-core repulsion = 19017.690161 eV Total energy + Delta-G solvation = -2956.717795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87954 -39.28932 -36.30045 -35.68236 -34.28879 -32.62863 -30.61240 -29.94874 -27.33796 -27.30975 -24.78863 -24.07138 -23.01822 -21.54615 -20.28652 -19.35671 -18.30705 -17.53768 -17.22263 -16.68052 -16.19801 -15.89337 -15.44828 -14.88721 -14.75475 -14.61616 -14.18107 -13.79724 -13.51925 -13.50980 -13.32293 -13.21893 -13.12140 -12.92950 -12.66404 -12.59803 -12.34847 -12.28534 -12.24033 -12.05842 -11.86517 -11.70191 -11.31323 -11.10690 -10.96518 -10.85144 -10.58579 -10.00073 -9.41082 -8.19143 -6.29932 1.36837 1.39112 1.47289 1.94671 2.23829 2.44057 3.10216 3.45593 3.60026 3.78140 4.03542 4.13888 4.20603 4.24238 4.38871 4.45365 4.57078 4.59489 4.64308 4.66741 4.70386 4.73003 4.86628 4.90044 4.95812 4.97646 5.01279 5.11550 5.15623 5.19653 5.26026 5.28710 5.36148 5.42876 5.46115 5.53747 5.59559 5.66426 5.78797 5.90487 6.16495 6.69672 6.79919 7.35649 7.55659 8.87214 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.022355 B = 0.006563 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.226306 B = 4265.439977 C = 4677.765105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.034 3.966 3 H 0.032 0.968 4 C -0.528 4.528 5 H 0.041 0.959 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.539 3.461 13 O -0.581 6.581 14 N -0.619 5.619 15 C 0.101 3.899 16 C -0.091 4.091 17 H 0.098 0.902 18 C -0.141 4.141 19 C -0.079 4.079 20 H 0.129 0.871 21 C -0.109 4.109 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.132 4.132 25 C 0.133 3.867 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.018 0.982 30 H 0.266 0.734 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.292 5.599 16.844 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.013 3.987 3 H 0.050 0.950 4 C -0.566 4.566 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.330 3.670 13 O -0.461 6.461 14 N -0.353 5.353 15 C -0.022 4.022 16 C -0.110 4.110 17 H 0.117 0.883 18 C -0.198 4.198 19 C -0.098 4.098 20 H 0.147 0.853 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.169 4.169 25 C 0.030 3.970 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.263 5.055 16.611 18.458 hybrid contribution -0.106 -0.709 -1.545 1.704 sum 6.157 4.346 15.066 16.845 Atomic orbital electron populations 1.21463 0.95716 0.99633 1.00215 1.18719 0.94682 0.95612 0.89690 0.95037 1.21120 1.32035 1.12255 0.91195 0.94116 1.25596 0.95094 0.95693 1.01369 1.69956 1.36971 1.23454 1.24475 0.85659 0.78764 0.78698 0.78832 1.19561 1.19912 1.20337 1.21142 0.75281 0.86836 0.83710 1.90436 1.54869 1.16585 1.84227 1.48478 1.62494 1.10798 1.13522 1.22355 1.00509 0.80535 0.98801 1.22481 0.98548 0.96172 0.93818 0.88349 1.21825 1.00630 0.94060 1.03281 1.22536 0.94370 0.92242 1.00605 0.85339 1.21582 0.95225 0.97998 0.99840 1.21520 0.97690 0.95190 1.00453 1.21392 0.96690 0.99021 0.97834 1.21471 0.96112 0.98134 1.01216 1.21346 0.95114 0.95206 0.85290 0.92319 0.94402 0.90890 0.96227 0.92456 0.92656 0.91910 0.92147 0.89912 0.92465 0.94276 0.89005 0.91939 0.89682 0.96244 0.92486 0.92741 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.66 8.86 71.98 0.64 -5.03 16 2 C 0.03 1.83 2.23 -12.29 -0.03 1.80 16 3 H 0.03 1.73 7.03 -2.39 -0.02 1.71 16 4 C -0.53 -31.71 8.32 25.60 0.21 -31.49 16 5 H 0.04 2.60 7.19 -2.91 -0.02 2.58 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -52.38 11.39 21.45 0.24 -52.13 16 8 Si 0.96 45.89 29.54 68.60 2.03 47.92 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.54 26.48 6.09 87.65 0.53 27.01 16 13 O -0.58 -32.10 13.67 -3.03 -0.04 -32.14 16 14 N -0.62 -23.39 2.99 -793.05 -2.37 -25.76 16 15 C 0.10 3.06 5.11 86.71 0.44 3.50 16 16 C -0.09 -1.83 3.35 -9.27 -0.03 -1.86 16 17 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 18 C -0.14 -2.22 8.43 71.98 0.61 -1.61 16 19 C -0.08 -1.62 3.49 -9.34 -0.03 -1.65 16 20 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 21 C -0.11 -2.37 3.64 30.49 0.11 -2.26 16 22 C -0.11 -2.55 5.93 30.57 0.18 -2.37 16 23 C -0.11 -3.59 5.89 30.63 0.18 -3.41 16 24 C -0.13 -4.24 4.87 30.05 0.15 -4.09 16 25 C 0.13 4.01 2.89 44.91 0.13 4.14 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.04 1.63 8.05 -2.39 -0.02 1.61 16 28 H 0.07 3.91 6.26 -2.39 -0.01 3.89 16 29 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.06 1.82 7.01 -2.39 -0.02 1.81 16 32 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.01 6.00 -2.39 -0.01 1.00 16 36 H 0.04 1.09 6.29 -2.38 -0.01 1.08 16 37 H 0.09 1.46 7.35 -2.39 -0.02 1.44 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.02 0.78 7.51 -2.39 -0.02 0.77 16 41 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 2.25 5.66 -2.39 -0.01 2.24 16 43 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -70.04 319.42 4.37 -65.67 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.97 Total: 12.04 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.54 Total: -15.60 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.13 Total: -77.89 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.04 Total: -32.14 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -70.04 4.37 -65.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597492483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.170 kcal (2) G-P(sol) polarization free energy of solvation -70.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds