Wall clock time and date at job start Mon Mar 30 2020 07:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.56567 * 2 1 4 4 C 1.53715 * 109.56620 * 239.64266 * 2 1 3 5 5 H 1.09001 * 112.12698 * 67.90417 * 4 2 1 6 6 C 1.54610 * 107.80610 * 192.55931 * 4 2 1 7 7 C 1.54285 * 104.84340 * 88.56548 * 6 4 2 8 8 C 1.54613 * 104.83897 * 359.97438 * 7 6 4 9 9 H 1.09001 * 112.21393 * 146.86742 * 8 7 6 10 10 C 1.53710 * 107.80853 * 271.44270 * 8 7 6 11 11 C 1.53130 * 109.56777 * 120.24005 * 2 1 3 12 12 H 1.08996 * 109.43064 * 305.77721 * 11 2 1 13 13 O 1.42904 * 109.42594 * 185.88295 * 11 2 1 14 14 C 1.42901 * 113.99752 * 139.70798 * 13 11 2 15 15 C 1.53007 * 109.46984 * 185.58006 * 14 13 11 16 16 C 1.50702 * 115.54817 * 281.29505 * 15 14 13 17 17 H 1.07999 * 120.00194 * 143.85567 * 16 15 14 18 18 C 1.37878 * 119.99939 * 323.85936 * 16 15 14 19 19 N 1.31516 * 119.99805 * 339.95452 * 18 16 15 20 20 Si 1.86799 * 120.00348 * 159.95500 * 18 16 15 21 21 H 1.48499 * 109.47106 * 89.99474 * 20 18 16 22 22 H 1.48495 * 109.47085 * 209.99844 * 20 18 16 23 23 H 1.48502 * 109.46668 * 330.00019 * 20 18 16 24 24 C 1.53000 * 117.49872 * 135.58267 * 15 14 13 25 25 C 1.53000 * 60.00019 * 252.50955 * 24 15 14 26 26 N 1.48710 * 107.24004 * 304.26940 * 4 2 1 27 27 H 1.09007 * 109.47405 * 306.23803 * 1 2 3 28 28 H 1.08999 * 109.47568 * 66.24173 * 1 2 3 29 29 H 1.08998 * 109.47128 * 186.24177 * 1 2 3 30 30 H 1.09006 * 110.35976 * 207.40088 * 6 4 2 31 31 H 1.08992 * 110.36690 * 329.71744 * 6 4 2 32 32 H 1.08995 * 110.36720 * 241.15472 * 7 6 4 33 33 H 1.09005 * 110.45994 * 118.87929 * 7 6 4 34 34 H 1.08997 * 109.56612 * 287.80136 * 10 8 7 35 35 H 1.09001 * 109.56857 * 167.44879 * 10 8 7 36 36 H 1.08995 * 109.46898 * 305.57165 * 14 13 11 37 37 H 1.08992 * 109.47470 * 65.57595 * 14 13 11 38 38 H 0.97007 * 119.99965 * 185.12556 * 19 18 16 39 39 H 1.08994 * 117.50132 * 0.02562 * 24 15 14 40 40 H 1.09004 * 117.49151 * 145.01944 * 24 15 14 41 41 H 1.08994 * 117.50264 * 252.50900 * 25 24 15 42 42 H 1.09001 * 117.49467 * 107.48595 * 25 24 15 43 43 H 1.00907 * 111.00619 * 46.56237 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0448 -0.7320 -1.2498 5 1 1.8244 -0.1845 -2.1662 6 6 3.5570 -0.9902 -1.0572 7 6 3.6367 -2.3501 -0.3328 8 6 2.1653 -2.7897 -0.1530 9 1 2.0490 -3.8721 -0.2076 10 6 1.6598 -2.2073 1.1767 11 6 2.0429 -0.7267 1.2465 12 1 1.5981 -0.2796 2.1355 13 8 3.4652 -0.6067 1.3151 14 6 3.9662 -0.3776 2.6336 15 6 5.4745 -0.1280 2.5699 16 6 6.3312 -1.3588 2.4209 17 1 7.2275 -1.3234 1.8194 18 6 5.9708 -2.5302 3.0525 19 7 5.1415 -2.4989 4.0728 20 14 6.6602 -4.1618 2.4591 21 1 7.9262 -4.4549 3.1779 22 1 5.6769 -5.2416 2.7277 23 1 6.9257 -4.0855 1.0000 24 6 6.0351 1.0272 3.4017 25 6 5.9502 1.1517 1.8791 26 7 1.4388 -2.0900 -1.2461 27 1 -0.3634 0.6075 0.8289 28 1 -0.3634 0.4140 -0.9405 29 1 -0.3633 -1.0216 0.1117 30 1 4.0584 -1.0452 -2.0236 31 1 4.0004 -0.2066 -0.4430 32 1 4.1192 -2.2352 0.6377 33 1 4.1777 -3.0748 -0.9413 34 1 2.1184 -2.7431 2.0077 35 1 0.5756 -2.3063 1.2300 36 1 3.4718 0.4933 3.0638 37 1 3.7685 -1.2513 3.2544 38 1 4.9458 -3.3122 4.5639 39 1 5.3297 1.6092 3.9947 40 1 7.0239 0.8970 3.8416 41 1 6.8830 1.1035 1.3174 42 1 5.1887 1.8157 1.4702 43 1 0.4498 -2.0443 -1.0513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685966126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:27 Heat of formation + Delta-G solvation = -2.860810 kcal Electronic energy + Delta-G solvation = -22546.557059 eV Core-core repulsion = 19592.873898 eV Total energy + Delta-G solvation = -2953.683161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68526 -37.09628 -35.11976 -32.84681 -32.18373 -30.83111 -29.52550 -26.81870 -25.79610 -24.90672 -22.76483 -21.98609 -21.10502 -19.80199 -19.19936 -18.43556 -16.69582 -16.15435 -15.83032 -14.85210 -14.68487 -14.22090 -13.85504 -13.46780 -13.23114 -13.13889 -12.60248 -12.45344 -12.32712 -11.92510 -11.64417 -11.55121 -11.38603 -11.04922 -10.92060 -10.88260 -10.48054 -10.42999 -10.35109 -10.31098 -10.08256 -9.95429 -9.61251 -9.32463 -9.10851 -8.68358 -8.32842 -8.04564 -7.88223 -6.09010 -4.04235 3.26754 3.35972 3.43358 4.35313 4.38406 4.62599 4.98670 5.02237 5.08631 5.15466 5.38333 5.44916 5.50432 5.61824 5.62415 5.71874 5.86357 5.88902 5.96801 6.06547 6.13709 6.18276 6.22327 6.35096 6.36986 6.44350 6.55077 6.61143 6.65546 6.73969 6.78988 6.85622 6.91776 7.00811 7.08788 7.27311 7.35657 7.52296 7.58772 7.68793 7.96364 8.32167 8.44984 8.87683 9.51130 10.93257 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.008820 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.847306 B = 3173.763035 C = 3818.015103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 H 0.077 0.923 4 C 0.073 3.927 5 H 0.085 0.915 6 C -0.108 4.108 7 C -0.118 4.118 8 C 0.068 3.932 9 H 0.085 0.915 10 C -0.165 4.165 11 C 0.096 3.904 12 H 0.049 0.951 13 O -0.348 6.348 14 C 0.076 3.924 15 C 0.061 3.939 16 C -0.481 4.481 17 H 0.061 0.939 18 C 0.077 3.923 19 N -0.876 5.876 20 Si 0.881 3.119 21 H -0.283 1.283 22 H -0.284 1.284 23 H -0.268 1.268 24 C -0.201 4.201 25 C -0.202 4.202 26 N -0.664 5.664 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.004 0.996 37 H 0.101 0.899 38 H 0.262 0.738 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.789 2.692 -6.058 11.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 H 0.095 0.905 4 C -0.037 4.037 5 H 0.103 0.897 6 C -0.145 4.145 7 C -0.156 4.156 8 C -0.042 4.042 9 H 0.103 0.897 10 C -0.204 4.204 11 C 0.037 3.963 12 H 0.067 0.933 13 O -0.267 6.267 14 C 0.000 4.000 15 C 0.061 3.939 16 C -0.518 4.518 17 H 0.079 0.921 18 C -0.126 4.126 19 N -0.514 5.514 20 Si 0.708 3.292 21 H -0.209 1.209 22 H -0.210 1.210 23 H -0.193 1.193 24 C -0.239 4.239 25 C -0.239 4.239 26 N -0.293 5.293 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.023 0.977 37 H 0.119 0.881 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.462 2.227 -6.726 11.036 hybrid contribution -0.270 -0.325 0.985 1.072 sum -8.731 1.902 -5.741 10.622 Atomic orbital electron populations 1.21883 0.95370 1.01686 1.01763 1.22114 0.94884 1.00638 0.96701 0.90495 1.22816 0.96148 0.89441 0.95337 0.89672 1.22379 0.93263 0.99784 0.99086 1.22593 0.94074 0.95207 1.03693 1.22779 0.95679 0.97537 0.88174 0.89730 1.22758 0.99642 0.97800 1.00182 1.21808 0.84708 0.93741 0.96031 0.93282 1.88285 1.17133 1.92193 1.29076 1.22568 0.93353 1.00026 0.84019 1.18785 0.90793 0.87608 0.96723 1.20439 1.08344 0.92813 1.30239 0.92129 1.24871 0.94731 0.98842 0.94114 1.69844 1.36084 1.28239 1.17191 0.86764 0.78664 0.83693 0.80094 1.20880 1.20970 1.19298 1.22984 1.01771 1.06897 0.92265 1.22764 1.01700 1.04857 0.94567 1.64003 1.07113 1.13491 1.44681 0.92627 0.92351 0.92505 0.93523 0.88085 0.86365 0.93858 0.90608 0.92395 0.97730 0.88123 0.92825 0.92006 0.90300 0.90785 0.91466 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.51 37.16 0.32 -1.40 16 2 C -0.12 -1.77 2.63 -90.18 -0.24 -2.00 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.07 1.08 4.17 -65.49 -0.27 0.81 16 5 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 6 C -0.11 -1.89 5.92 -25.21 -0.15 -2.03 16 7 C -0.12 -2.25 5.92 -25.21 -0.15 -2.40 16 8 C 0.07 1.12 4.59 -65.48 -0.30 0.82 16 9 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 10 C -0.16 -2.69 5.07 -26.31 -0.13 -2.82 16 11 C 0.10 1.62 2.43 -26.62 -0.06 1.55 16 12 H 0.05 0.84 7.60 -51.93 -0.39 0.44 16 13 O -0.35 -7.01 3.71 -35.23 -0.13 -7.14 16 14 C 0.08 1.72 5.40 37.16 0.20 1.92 16 15 C 0.06 1.49 1.97 -155.66 -0.31 1.18 16 16 C -0.48 -12.77 8.99 -34.44 -0.31 -13.08 16 17 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 18 C 0.08 2.02 5.08 -17.82 -0.09 1.93 16 19 N -0.88 -23.45 11.04 55.43 0.61 -22.84 16 20 Si 0.88 20.62 29.59 -169.99 -5.03 15.59 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.20 -4.56 9.88 -26.73 -0.26 -4.83 16 25 C -0.20 -4.39 9.95 -26.73 -0.27 -4.65 16 26 N -0.66 -9.88 7.40 -94.66 -0.70 -10.58 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.63 4.90 -51.93 -0.25 0.38 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.96 5.79 -51.93 -0.30 1.66 16 32 H 0.12 2.66 5.79 -51.93 -0.30 2.36 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.06 0.82 6.69 -51.93 -0.35 0.47 16 36 H 0.00 0.10 7.81 -51.93 -0.41 -0.31 16 37 H 0.10 2.54 5.39 -51.93 -0.28 2.26 16 38 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 39 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 40 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.33 4.29 6.02 -39.29 -0.24 4.05 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -26.07 317.43 -9.63 -35.70 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.14 Total: 9.49 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -2.03 Total: -25.00 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: -0.09 Total: -33.42 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.13 Total: -7.14 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.07 -9.63 -35.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685966126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.837 kcal (2) G-P(sol) polarization free energy of solvation -26.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds