Wall clock time and date at job start Mon Mar 30 2020 07:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.56567 * 2 1 4 4 C 1.53715 * 109.56620 * 239.64266 * 2 1 3 5 5 H 1.09001 * 112.12698 * 67.90417 * 4 2 1 6 6 C 1.54610 * 107.80610 * 192.55931 * 4 2 1 7 7 C 1.54285 * 104.84340 * 88.56548 * 6 4 2 8 8 C 1.54613 * 104.83897 * 359.97438 * 7 6 4 9 9 H 1.09001 * 112.21393 * 146.86742 * 8 7 6 10 10 C 1.53710 * 107.80853 * 271.44270 * 8 7 6 11 11 C 1.53130 * 109.56777 * 120.24005 * 2 1 3 12 12 H 1.08996 * 109.43064 * 305.77721 * 11 2 1 13 13 O 1.42904 * 109.42594 * 185.88295 * 11 2 1 14 14 C 1.42901 * 113.99752 * 139.70798 * 13 11 2 15 15 C 1.53007 * 109.46984 * 185.58006 * 14 13 11 16 16 C 1.50702 * 115.54817 * 281.29505 * 15 14 13 17 17 H 1.07999 * 120.00194 * 143.85567 * 16 15 14 18 18 C 1.37878 * 119.99939 * 323.85936 * 16 15 14 19 19 N 1.31516 * 119.99805 * 339.95452 * 18 16 15 20 20 Si 1.86799 * 120.00348 * 159.95500 * 18 16 15 21 21 H 1.48499 * 109.47106 * 89.99474 * 20 18 16 22 22 H 1.48495 * 109.47085 * 209.99844 * 20 18 16 23 23 H 1.48502 * 109.46668 * 330.00019 * 20 18 16 24 24 C 1.53000 * 117.49872 * 135.58267 * 15 14 13 25 25 C 1.53000 * 60.00019 * 252.50955 * 24 15 14 26 26 N 1.48710 * 107.24004 * 304.26940 * 4 2 1 27 27 H 1.09007 * 109.47405 * 306.23803 * 1 2 3 28 28 H 1.08999 * 109.47568 * 66.24173 * 1 2 3 29 29 H 1.08998 * 109.47128 * 186.24177 * 1 2 3 30 30 H 1.09006 * 110.35976 * 207.40088 * 6 4 2 31 31 H 1.08992 * 110.36690 * 329.71744 * 6 4 2 32 32 H 1.08995 * 110.36720 * 241.15472 * 7 6 4 33 33 H 1.09005 * 110.45994 * 118.87929 * 7 6 4 34 34 H 1.08997 * 109.56612 * 287.80136 * 10 8 7 35 35 H 1.09001 * 109.56857 * 167.44879 * 10 8 7 36 36 H 1.08995 * 109.46898 * 305.57165 * 14 13 11 37 37 H 1.08992 * 109.47470 * 65.57595 * 14 13 11 38 38 H 0.97007 * 119.99965 * 185.12556 * 19 18 16 39 39 H 1.08994 * 117.50132 * 0.02562 * 24 15 14 40 40 H 1.09004 * 117.49151 * 145.01944 * 24 15 14 41 41 H 1.08994 * 117.50264 * 252.50900 * 25 24 15 42 42 H 1.09001 * 117.49467 * 107.48595 * 25 24 15 43 43 H 1.00907 * 111.00619 * 46.56237 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0448 -0.7320 -1.2498 5 1 1.8244 -0.1845 -2.1662 6 6 3.5570 -0.9902 -1.0572 7 6 3.6367 -2.3501 -0.3328 8 6 2.1653 -2.7897 -0.1530 9 1 2.0490 -3.8721 -0.2076 10 6 1.6598 -2.2073 1.1767 11 6 2.0429 -0.7267 1.2465 12 1 1.5981 -0.2796 2.1355 13 8 3.4652 -0.6067 1.3151 14 6 3.9662 -0.3776 2.6336 15 6 5.4745 -0.1280 2.5699 16 6 6.3312 -1.3588 2.4209 17 1 7.2275 -1.3234 1.8194 18 6 5.9708 -2.5302 3.0525 19 7 5.1415 -2.4989 4.0728 20 14 6.6602 -4.1618 2.4591 21 1 7.9262 -4.4549 3.1779 22 1 5.6769 -5.2416 2.7277 23 1 6.9257 -4.0855 1.0000 24 6 6.0351 1.0272 3.4017 25 6 5.9502 1.1517 1.8791 26 7 1.4388 -2.0900 -1.2461 27 1 -0.3634 0.6075 0.8289 28 1 -0.3634 0.4140 -0.9405 29 1 -0.3633 -1.0216 0.1117 30 1 4.0584 -1.0452 -2.0236 31 1 4.0004 -0.2066 -0.4430 32 1 4.1192 -2.2352 0.6377 33 1 4.1777 -3.0748 -0.9413 34 1 2.1184 -2.7431 2.0077 35 1 0.5756 -2.3063 1.2300 36 1 3.4718 0.4933 3.0638 37 1 3.7685 -1.2513 3.2544 38 1 4.9458 -3.3122 4.5639 39 1 5.3297 1.6092 3.9947 40 1 7.0239 0.8970 3.8416 41 1 6.8830 1.1035 1.3174 42 1 5.1887 1.8157 1.4702 43 1 0.4498 -2.0443 -1.0513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685966126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:26 Heat of formation + Delta-G solvation = -16.572830 kcal Electronic energy + Delta-G solvation = -22547.151657 eV Core-core repulsion = 19592.873898 eV Total energy + Delta-G solvation = -2954.277758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.00574 -38.82124 -36.73388 -34.22243 -34.01579 -32.16956 -30.87430 -28.24131 -27.53046 -26.66725 -24.05922 -23.27288 -22.88913 -21.20955 -21.02992 -19.77000 -18.40100 -17.53512 -17.47514 -16.69368 -16.02268 -15.89671 -15.42464 -14.96982 -14.73153 -14.39176 -14.10892 -13.76283 -13.72899 -13.55464 -13.19566 -12.95214 -12.84418 -12.73071 -12.53586 -12.31970 -12.26056 -12.09139 -11.79824 -11.76566 -11.62423 -11.46295 -11.12565 -10.98396 -10.93791 -10.56181 -10.05977 -9.63874 -9.28306 -8.10358 -6.10550 1.36008 1.42224 1.52001 2.41055 2.85277 3.07894 3.39772 3.72668 3.80033 3.83822 3.91112 4.12788 4.20840 4.29200 4.33780 4.41850 4.49925 4.56001 4.60648 4.69009 4.73559 4.78540 4.87885 4.89796 4.96475 5.02747 5.06278 5.10320 5.14102 5.25452 5.27691 5.34979 5.36953 5.40681 5.55837 5.60589 5.66027 5.73912 6.00165 6.06820 6.45073 6.57304 6.73574 6.84313 7.46148 8.90474 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.008820 C = 0.007332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.847306 B = 3173.763035 C = 3818.015103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 H 0.075 0.925 4 C 0.079 3.921 5 H 0.108 0.892 6 C -0.107 4.107 7 C -0.122 4.122 8 C 0.072 3.928 9 H 0.089 0.911 10 C -0.158 4.158 11 C 0.086 3.914 12 H 0.047 0.953 13 O -0.352 6.352 14 C 0.090 3.910 15 C 0.032 3.968 16 C -0.500 4.500 17 H 0.046 0.954 18 C 0.046 3.954 19 N -0.894 5.894 20 Si 0.928 3.072 21 H -0.279 1.279 22 H -0.280 1.280 23 H -0.272 1.272 24 C -0.200 4.200 25 C -0.181 4.181 26 N -0.657 5.657 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.009 0.991 37 H 0.073 0.927 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.647 3.214 -7.399 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.093 0.907 4 C -0.031 4.031 5 H 0.126 0.874 6 C -0.145 4.145 7 C -0.160 4.160 8 C -0.038 4.038 9 H 0.107 0.893 10 C -0.197 4.197 11 C 0.027 3.973 12 H 0.065 0.935 13 O -0.272 6.272 14 C 0.014 3.986 15 C 0.031 3.969 16 C -0.537 4.537 17 H 0.064 0.936 18 C -0.155 4.155 19 N -0.531 5.531 20 Si 0.754 3.246 21 H -0.205 1.205 22 H -0.206 1.206 23 H -0.197 1.197 24 C -0.238 4.238 25 C -0.218 4.218 26 N -0.287 5.287 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.329 2.755 -8.069 13.393 hybrid contribution 0.334 -0.475 1.390 1.506 sum -9.995 2.280 -6.679 12.235 Atomic orbital electron populations 1.21851 0.92592 1.02404 1.03258 1.22074 0.97023 0.99850 0.94671 0.90655 1.22820 0.93970 0.89696 0.96593 0.87381 1.22306 0.95577 0.98106 0.98486 1.22487 0.95600 0.96216 1.01691 1.22679 0.94207 0.98022 0.88876 0.89271 1.22695 1.01078 0.97047 0.98906 1.22101 0.83073 0.94507 0.97588 0.93484 1.88318 1.19287 1.92287 1.27295 1.22178 0.92700 0.98758 0.84957 1.18901 0.91527 0.87676 0.98747 1.20598 1.08452 0.94476 1.30183 0.93612 1.25337 0.95175 1.00925 0.94090 1.69934 1.36808 1.28683 1.17719 0.86022 0.78253 0.80975 0.79330 1.20466 1.20567 1.19668 1.22969 1.01514 1.06268 0.93088 1.22732 1.01851 1.03306 0.93942 1.63969 1.07959 1.13245 1.43568 0.91940 0.90308 0.91969 0.93200 0.90087 0.90024 0.94786 0.93658 0.89549 0.97304 0.90898 0.92821 0.90629 0.91168 0.90844 0.89691 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.51 71.98 0.61 -2.11 16 2 C -0.12 -3.01 2.63 -10.51 -0.03 -3.04 16 3 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.08 2.14 4.17 45.35 0.19 2.32 16 5 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 6 C -0.11 -3.67 5.92 31.58 0.19 -3.48 16 7 C -0.12 -4.68 5.92 31.58 0.19 -4.49 16 8 C 0.07 2.30 4.59 45.35 0.21 2.51 16 9 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 10 C -0.16 -5.01 5.07 30.86 0.16 -4.85 16 11 C 0.09 2.80 2.43 30.67 0.07 2.88 16 12 H 0.05 1.56 7.60 -2.39 -0.02 1.54 16 13 O -0.35 -14.31 3.71 -148.98 -0.55 -14.86 16 14 C 0.09 4.16 5.40 71.98 0.39 4.55 16 15 C 0.03 1.57 1.97 -52.92 -0.10 1.46 16 16 C -0.50 -27.25 8.99 25.60 0.23 -27.02 16 17 H 0.05 2.55 7.89 -2.91 -0.02 2.53 16 18 C 0.05 2.46 5.08 84.65 0.43 2.89 16 19 N -0.89 -48.97 11.04 21.45 0.24 -48.73 16 20 Si 0.93 43.23 29.59 68.60 2.03 45.26 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 C -0.20 -9.06 9.88 30.59 0.30 -8.76 16 25 C -0.18 -7.80 9.95 30.59 0.30 -7.49 16 26 N -0.66 -17.61 7.40 -453.40 -3.36 -20.96 16 27 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.11 4.90 -2.39 -0.01 1.10 16 30 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.08 3.12 5.79 -2.39 -0.01 3.11 16 32 H 0.08 3.79 5.79 -2.39 -0.01 3.78 16 33 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 2.22 6.69 -2.39 -0.02 2.20 16 36 H 0.01 0.39 7.81 -2.39 -0.02 0.37 16 37 H 0.07 3.80 5.39 -2.39 -0.01 3.78 16 38 H 0.26 13.75 8.32 -92.70 -0.77 12.98 16 39 H 0.08 3.17 8.09 -2.39 -0.02 3.15 16 40 H 0.07 3.25 8.14 -2.38 -0.02 3.23 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.34 7.59 6.02 -89.69 -0.54 7.05 16 Total: -1.00 -56.57 317.43 1.94 -54.62 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.45 Total: 29.30 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 3.14 Total: -44.64 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -3.12 Total: -69.69 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.55 Total: -14.86 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -56.57 1.94 -54.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685966126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.049 kcal (2) G-P(sol) polarization free energy of solvation -56.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds