Wall clock time and date at job start Mon Mar 30 2020 07:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47280 * 2 1 4 4 C 1.53002 * 109.46978 * 119.99927 * 2 1 3 5 5 C 1.52997 * 109.46978 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47164 * 299.99874 * 5 4 2 7 7 C 1.52997 * 109.47127 * 59.99836 * 6 5 4 8 8 C 1.52996 * 109.46975 * 239.99465 * 2 1 3 9 9 H 1.09004 * 109.47368 * 60.00217 * 8 2 1 10 10 C 1.50702 * 109.47592 * 300.00152 * 8 2 1 11 11 O 1.21282 * 119.99683 * 0.02562 * 10 8 2 12 12 N 1.34779 * 120.00389 * 179.97438 * 10 8 2 13 13 C 1.46497 * 119.99798 * 180.02562 * 12 10 8 14 14 C 1.50694 * 109.47160 * 90.00592 * 13 12 10 15 15 H 1.08009 * 120.00058 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00057 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00296 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47150 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47271 * 119.99825 * 18 16 14 21 21 H 1.48496 * 109.46890 * 239.99730 * 18 16 14 22 22 C 1.46499 * 119.99712 * 0.02562 * 12 10 8 23 23 C 1.52994 * 117.49762 * 188.61988 * 22 12 10 24 24 C 1.52999 * 117.49555 * 119.99790 * 22 12 10 25 25 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47045 * 300.00240 * 1 2 3 27 27 H 1.09000 * 109.47140 * 60.00147 * 1 2 3 28 28 H 1.09002 * 109.47097 * 299.99801 * 4 2 1 29 29 H 1.09001 * 109.47142 * 59.99766 * 4 2 1 30 30 H 1.09001 * 109.47375 * 59.99908 * 5 4 2 31 31 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 32 32 H 1.08998 * 109.46505 * 299.99708 * 6 5 4 33 33 H 1.08996 * 109.46884 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 36 36 H 1.09004 * 109.46519 * 210.00274 * 13 12 10 37 37 H 1.08994 * 109.47256 * 330.00047 * 13 12 10 38 38 H 0.97001 * 120.00121 * 179.97438 * 17 16 14 39 39 H 1.08997 * 115.55041 * 334.33339 * 22 12 10 40 40 H 1.09007 * 117.49666 * 359.97438 * 23 22 12 41 41 H 1.08997 * 117.50605 * 145.02294 * 23 22 12 42 42 H 1.09004 * 117.49602 * 214.97713 * 24 22 12 43 43 H 1.08998 * 117.50374 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0003 7 6 3.5704 -0.7205 -1.2489 8 6 2.0399 -0.7214 -1.2492 9 1 1.6766 -0.2076 -2.1392 10 6 1.5376 -2.1422 -1.2491 11 8 0.8399 -2.5387 -0.3397 12 7 1.8627 -2.9720 -2.2602 13 6 1.3739 -4.3530 -2.2603 14 6 0.0463 -4.4159 -2.9706 15 1 -0.3899 -3.5169 -3.3806 16 6 -0.6114 -5.6210 -3.0971 17 7 -0.0801 -6.7158 -2.5984 18 14 -2.2575 -5.6988 -3.9770 19 1 -2.6349 -4.3400 -4.4420 20 1 -2.1521 -6.6104 -5.1445 21 1 -3.2941 -6.2077 -3.0435 22 6 2.7050 -2.4929 -3.3589 23 6 2.8735 -3.4103 -4.5717 24 6 4.0346 -3.2121 -3.5952 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6766 -0.2074 2.1393 29 1 1.6766 -1.7489 1.2493 30 1 3.9329 0.3071 1.2498 31 1 3.9332 -1.2341 2.1398 32 1 3.7175 -2.4694 0.0003 33 1 5.1704 -1.4416 0.0008 34 1 3.9338 -1.2343 -2.1389 35 1 3.9335 0.3073 -1.2487 36 1 2.0916 -4.9924 -2.7744 37 1 1.2528 -4.6957 -1.2327 38 1 -0.5430 -7.5635 -2.6871 39 1 2.6748 -1.4186 -3.5404 40 1 2.3580 -4.3706 -4.5518 41 1 2.9540 -2.9397 -5.5515 42 1 4.8789 -2.6110 -3.9326 43 1 4.2828 -4.0415 -2.9329 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714390860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:18 Heat of formation + Delta-G solvation = -25.160800 kcal Electronic energy + Delta-G solvation = -21931.871784 eV Core-core repulsion = 18977.221623 eV Total energy + Delta-G solvation = -2954.650161 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.33274 -37.56550 -36.27893 -33.22451 -32.41144 -31.89219 -30.76147 -27.39630 -26.05456 -23.50830 -22.83937 -22.03031 -21.41052 -20.97795 -19.93386 -17.95168 -16.46702 -16.25022 -15.39796 -15.18080 -14.69535 -14.42373 -14.11456 -13.81060 -13.55638 -13.15362 -12.98174 -12.56903 -12.17719 -11.97764 -11.80502 -11.58787 -11.40544 -11.19318 -11.04417 -10.93471 -10.85002 -10.67631 -10.50833 -10.48894 -10.24738 -10.08740 -10.01553 -9.82133 -9.70676 -9.43798 -8.46985 -8.42958 -7.46255 -6.03346 -4.07513 3.29804 3.37266 3.39844 3.43958 3.89114 4.38203 4.48003 4.84422 4.89762 5.00315 5.23010 5.27501 5.31455 5.34782 5.42168 5.44523 5.50672 5.64166 5.71573 5.73903 5.82674 5.96045 6.00861 6.06664 6.13001 6.18730 6.23013 6.24000 6.41498 6.44408 6.46780 6.51590 6.58937 6.75082 6.85455 6.98395 7.10110 7.46779 7.59883 7.93751 8.25107 8.48811 8.93483 9.17680 9.57702 11.04363 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020595 B = 0.006987 C = 0.005976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.205107 B = 4006.576000 C = 4684.247943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.063 4.063 3 H 0.062 0.938 4 C -0.129 4.129 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.106 4.106 9 H 0.085 0.915 10 C 0.520 3.480 11 O -0.531 6.531 12 N -0.570 5.570 13 C 0.245 3.755 14 C -0.518 4.518 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.079 3.921 23 C -0.177 4.177 24 C -0.203 4.203 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.262 0.738 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 12.498 1.063 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.082 4.082 3 H 0.080 0.920 4 C -0.167 4.167 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.128 4.128 9 H 0.103 0.897 10 C 0.308 3.692 11 O -0.409 6.409 12 N -0.299 5.299 13 C 0.126 3.874 14 C -0.557 4.557 15 H 0.076 0.924 16 C -0.141 4.141 17 N -0.535 5.535 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.027 4.027 23 C -0.215 4.215 24 C -0.242 4.242 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.548 12.064 1.578 14.869 hybrid contribution -0.884 -0.082 -0.677 1.116 sum 7.664 11.982 0.901 14.252 Atomic orbital electron populations 1.22100 0.94984 1.04779 1.00016 1.20806 0.96039 0.97528 0.93792 0.91957 1.21863 0.94469 1.03947 0.96374 1.21519 0.96596 0.99698 0.97530 1.21507 0.99569 1.00117 0.94478 1.21755 0.93474 1.00896 0.99492 1.21408 0.96673 0.94867 0.99821 0.89668 1.20137 0.80287 0.86839 0.81916 1.90521 1.37931 1.76769 1.35651 1.47746 1.48127 1.14359 1.19703 1.19262 0.94109 0.75414 0.98643 1.21441 1.04619 0.93960 1.35720 0.92446 1.24921 0.97839 0.95553 0.95803 1.69943 1.38911 0.98949 1.45678 0.86481 0.83949 0.77989 0.79254 1.19826 1.21019 1.20954 1.21493 0.93752 0.95968 0.91502 1.23375 1.01262 1.03383 0.93471 1.23408 0.92333 1.04213 1.04280 0.89093 0.93640 0.93885 0.92990 0.88492 0.92824 0.92575 0.91678 0.92379 0.90156 0.91821 0.94974 0.93948 0.92844 0.86620 0.86397 0.89035 0.89057 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 8.89 37.16 0.33 -2.22 16 2 C -0.06 -0.92 2.46 -90.62 -0.22 -1.14 16 3 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -1.94 4.93 -26.73 -0.13 -2.07 16 5 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 6 C -0.12 -1.61 5.70 -26.73 -0.15 -1.77 16 7 C -0.12 -1.52 5.08 -26.71 -0.14 -1.66 16 8 C -0.11 -1.63 1.75 -91.75 -0.16 -1.79 16 9 H 0.09 1.22 7.57 -51.93 -0.39 0.83 16 10 C 0.52 10.50 5.27 -10.98 -0.06 10.44 16 11 O -0.53 -12.56 10.93 5.56 0.06 -12.50 16 12 N -0.57 -11.85 2.79 -167.48 -0.47 -12.32 16 13 C 0.24 6.27 4.46 -5.20 -0.02 6.24 16 14 C -0.52 -14.47 9.19 -34.45 -0.32 -14.79 16 15 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 18 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.08 1.30 4.33 -67.93 -0.29 1.01 16 23 C -0.18 -2.89 9.72 -26.73 -0.26 -3.15 16 24 C -0.20 -2.95 9.30 -26.73 -0.25 -3.19 16 25 H 0.09 1.77 5.51 -51.93 -0.29 1.49 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 1.80 5.51 -51.93 -0.29 1.51 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.08 7.22 -51.93 -0.37 0.70 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.01 4.42 -51.93 -0.23 0.78 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.03 0.84 6.33 -51.93 -0.33 0.51 16 37 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.12 1.62 6.17 -51.93 -0.32 1.30 16 40 H 0.12 2.35 6.29 -51.92 -0.33 2.02 16 41 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 1.51 8.12 -51.93 -0.42 1.09 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -30.37 322.45 -8.89 -39.26 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.12 Total: 3.64 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.93 Total: -14.12 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.27 Total: -37.98 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.06 Total: -12.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.37 -8.89 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714390860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.096 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds