Wall clock time and date at job start Mon Mar 30 2020 07:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 115.56101 * 2 1 4 4 C 1.53080 * 117.51207 * 214.30328 * 2 1 3 5 5 C 1.53002 * 59.98354 * 252.52356 * 4 2 1 6 6 H 1.09003 * 117.49241 * 252.50045 * 5 4 2 7 7 C 1.52997 * 117.50197 * 107.50166 * 5 4 2 8 8 H 1.08991 * 115.56110 * 325.56141 * 7 5 4 9 9 C 1.53004 * 117.49763 * 179.87536 * 7 5 4 10 10 C 1.52999 * 60.00049 * 252.51147 * 9 7 5 11 11 H 1.08996 * 117.50153 * 107.51066 * 10 9 7 12 12 C 1.50699 * 117.49934 * 252.51352 * 10 9 7 13 13 O 1.21281 * 120.00193 * 68.60788 * 12 10 9 14 14 N 1.34777 * 119.99930 * 248.33293 * 12 10 9 15 15 C 1.46500 * 120.00049 * 180.27598 * 14 12 10 16 16 C 1.53000 * 109.46915 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47076 * 299.99500 * 16 15 14 18 18 C 1.52995 * 109.47336 * 59.99770 * 16 15 14 19 19 C 1.50706 * 109.46957 * 179.97438 * 16 15 14 20 20 H 1.08001 * 119.99875 * 1.34956 * 19 16 15 21 21 C 1.37874 * 120.00116 * 181.34680 * 19 16 15 22 22 N 1.31515 * 119.99953 * 193.97822 * 21 19 16 23 23 Si 1.86800 * 119.99957 * 13.97520 * 21 19 16 24 24 H 1.48498 * 109.47069 * 84.55046 * 23 21 19 25 25 H 1.48498 * 109.47323 * 204.55168 * 23 21 19 26 26 H 1.48499 * 109.47319 * 324.54870 * 23 21 19 27 27 H 1.09004 * 109.46478 * 274.30450 * 1 2 3 28 28 H 1.08994 * 109.46910 * 34.30700 * 1 2 3 29 29 H 1.08999 * 109.47277 * 154.30945 * 1 2 3 30 30 H 1.08998 * 117.49604 * 145.03283 * 4 2 1 31 31 H 1.09007 * 117.52995 * 359.97438 * 4 2 1 32 32 H 1.08990 * 117.50060 * 145.01942 * 9 7 5 33 33 H 1.09002 * 117.49498 * 359.97438 * 9 7 5 34 34 H 0.97002 * 119.99780 * 0.26733 * 14 12 10 35 35 H 1.09000 * 109.46748 * 299.99695 * 15 14 12 36 36 H 1.09005 * 109.47365 * 59.99767 * 15 14 12 37 37 H 1.08997 * 109.46914 * 69.36978 * 17 16 15 38 38 H 1.08999 * 109.46774 * 189.37160 * 17 16 15 39 39 H 1.09000 * 109.47014 * 309.37063 * 17 16 15 40 40 H 1.08999 * 109.47006 * 60.00208 * 18 16 15 41 41 H 1.09000 * 109.47339 * 179.97438 * 18 16 15 42 42 H 1.09000 * 109.47459 * 299.99944 * 18 16 15 43 43 H 0.97008 * 119.99717 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2372 -1.1215 -0.7652 5 6 2.2365 -1.1211 0.7649 6 1 3.1714 -0.8752 1.2684 7 6 1.3589 -2.1563 1.4713 8 1 0.4231 -2.4009 0.9688 9 6 1.3605 -2.1577 3.0013 10 6 2.0653 -3.2785 2.2345 11 1 3.1553 -3.2795 2.2336 12 6 1.4141 -4.6375 2.2339 13 8 0.3690 -4.8089 1.6430 14 7 1.9960 -5.6639 2.8854 15 6 1.3661 -6.9865 2.8798 16 6 2.2244 -7.9636 3.6857 17 6 3.6158 -8.0588 3.0565 18 6 2.3492 -7.4643 5.1264 19 6 1.5760 -9.3241 3.6804 20 1 0.6563 -9.4818 3.1367 21 6 2.1570 -10.3673 4.3696 22 7 1.7604 -11.6019 4.1506 23 14 3.5077 -10.0271 5.6144 24 1 2.8984 -9.6771 6.9226 25 1 4.3535 -11.2377 5.7703 26 1 4.3449 -8.8962 5.1398 27 1 -0.3632 0.0771 1.0248 28 1 -0.3633 0.8488 -0.5792 29 1 -0.3634 -0.9261 -0.4455 30 1 3.1723 -0.8756 -1.2682 31 1 1.6126 -1.8598 -1.2683 32 1 0.4259 -2.4033 3.5053 33 1 1.9872 -1.4214 3.5045 34 1 2.8320 -5.5268 3.3579 35 1 0.3746 -6.9186 3.3276 36 1 1.2775 -7.3425 1.8533 37 1 4.1485 -7.1202 3.2090 38 1 4.1711 -8.8719 3.5241 39 1 3.5190 -8.2522 1.9882 40 1 1.3579 -7.3965 5.5746 41 1 2.9603 -8.1606 5.7007 42 1 2.8179 -6.4802 5.1307 43 1 2.1689 -12.3359 4.6358 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717212128.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:49:15 Heat of formation + Delta-G solvation = 11.471874 kcal Electronic energy + Delta-G solvation = -20209.222066 eV Core-core repulsion = 17256.160417 eV Total energy + Delta-G solvation = -2953.061649 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.92915 -38.41814 -36.80031 -35.25849 -33.27000 -31.47610 -28.71770 -26.69098 -26.36739 -25.07896 -23.96440 -23.12709 -21.52025 -19.89074 -19.43103 -19.08426 -17.15995 -16.19716 -16.01343 -15.32426 -15.01195 -14.90500 -14.45718 -13.81897 -13.34058 -13.32248 -12.99785 -12.88205 -12.70537 -12.61224 -12.32636 -12.20620 -12.05126 -11.69331 -11.36571 -11.32618 -11.11089 -10.72185 -10.44393 -10.31903 -10.17810 -10.07315 -9.96943 -9.68381 -9.41948 -9.10991 -8.69302 -8.53506 -8.44066 -6.15532 -4.12851 2.75117 3.23307 3.30309 3.32766 3.37928 3.62737 4.04058 4.34760 4.37551 4.52702 4.69675 4.81989 5.01509 5.10186 5.13505 5.15212 5.16010 5.25540 5.58853 5.59762 5.63612 5.63911 5.75753 5.83891 5.88080 5.96581 6.04718 6.05622 6.10573 6.22178 6.35423 6.47654 6.52250 6.62377 6.68830 6.79559 6.97114 7.21307 7.42277 7.71497 7.96355 8.44068 8.62870 8.89916 9.48351 10.97616 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.044031 B = 0.003608 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.761621 B = 7758.885460 C = 7891.446326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.148 4.148 3 H 0.102 0.898 4 C -0.173 4.173 5 C -0.122 4.122 6 H 0.104 0.896 7 C -0.088 4.088 8 H 0.119 0.881 9 C -0.147 4.147 10 C -0.184 4.184 11 H 0.120 0.880 12 C 0.535 3.465 13 O -0.550 6.550 14 N -0.718 5.718 15 C 0.142 3.858 16 C 0.029 3.971 17 C -0.142 4.142 18 C -0.148 4.148 19 C -0.514 4.514 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.891 5.891 23 Si 0.886 3.114 24 H -0.286 1.286 25 H -0.305 1.305 26 H -0.249 1.249 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.397 0.603 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.022 0.978 38 H 0.056 0.944 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.030 0.970 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.542 21.916 -3.863 22.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.166 4.166 3 H 0.120 0.880 4 C -0.210 4.210 5 C -0.140 4.140 6 H 0.122 0.878 7 C -0.107 4.107 8 H 0.137 0.863 9 C -0.184 4.184 10 C -0.206 4.206 11 H 0.138 0.862 12 C 0.320 3.680 13 O -0.428 6.428 14 N -0.368 5.368 15 C 0.019 3.981 16 C 0.027 3.973 17 C -0.199 4.199 18 C -0.204 4.204 19 C -0.552 4.552 20 H 0.094 0.906 21 C -0.127 4.127 22 N -0.528 5.528 23 Si 0.718 3.282 24 H -0.213 1.213 25 H -0.234 1.234 26 H -0.175 1.175 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.794 21.544 -4.248 22.136 hybrid contribution 1.286 -0.057 1.075 1.677 sum 4.080 21.487 -3.173 22.100 Atomic orbital electron populations 1.21361 0.92727 1.01929 1.02039 1.22358 0.95644 0.94059 1.04578 0.87957 1.23140 1.02578 1.01451 0.93833 1.21824 0.99828 0.98627 0.93756 0.87828 1.21734 1.00068 0.95453 0.93429 0.86319 1.22976 1.02300 0.98759 0.94376 1.22313 0.99936 0.89513 1.08809 0.86193 1.19574 0.84679 0.84964 0.78756 1.90669 1.23516 1.84280 1.44379 1.46237 1.26851 1.10688 1.53004 1.21514 0.96383 0.79456 1.00704 1.18718 0.92715 0.95064 0.90772 1.22294 0.97917 0.98971 1.00751 1.22356 1.00768 0.97933 0.99378 1.20729 1.10657 0.90852 1.32925 0.90556 1.24975 0.96360 0.94675 0.96730 1.69956 1.43388 0.98691 1.40755 0.87288 0.82647 0.76257 0.81969 1.21349 1.23395 1.17509 0.91961 0.92448 0.92245 0.88856 0.88452 0.88173 0.87999 0.76851 0.92049 0.91923 0.95929 0.92518 0.93414 0.92812 0.94042 0.95132 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.04 37.16 0.34 -0.68 16 2 C -0.15 -1.23 6.41 -90.57 -0.58 -1.81 16 3 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.17 -1.55 9.90 -26.69 -0.26 -1.81 16 5 C -0.12 -1.12 5.84 -90.62 -0.53 -1.65 16 6 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 7 C -0.09 -0.99 4.69 -90.62 -0.43 -1.41 16 8 H 0.12 1.56 6.71 -51.93 -0.35 1.21 16 9 C -0.15 -1.52 9.95 -26.73 -0.27 -1.79 16 10 C -0.18 -2.25 5.91 -91.77 -0.54 -2.79 16 11 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 12 C 0.53 8.86 7.61 -10.99 -0.08 8.78 16 13 O -0.55 -11.21 16.26 5.56 0.09 -11.12 16 14 N -0.72 -11.95 5.00 -60.29 -0.30 -12.25 16 15 C 0.14 2.88 4.49 -4.04 -0.02 2.86 16 16 C 0.03 0.62 0.50 -155.66 -0.08 0.55 16 17 C -0.14 -2.90 7.53 37.16 0.28 -2.62 16 18 C -0.15 -2.99 7.52 37.16 0.28 -2.71 16 19 C -0.51 -13.88 8.62 -34.44 -0.30 -14.18 16 20 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.08 2.10 5.32 -17.82 -0.09 2.00 16 22 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 23 Si 0.89 21.10 22.79 -169.99 -3.87 17.23 16 24 H -0.29 -6.78 7.10 56.52 0.40 -6.38 16 25 H -0.31 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.25 -5.38 4.65 56.52 0.26 -5.12 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.54 7.40 -51.93 -0.38 0.15 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 0.96 8.05 -51.92 -0.42 0.54 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.40 5.73 6.26 -40.82 -0.26 5.48 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 38 H 0.06 1.23 4.30 -51.93 -0.22 1.01 16 39 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.89 2.25 -51.93 -0.12 0.77 16 42 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -30.70 333.17 -7.81 -38.52 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.24 Total: 5.81 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.28 Total: -17.25 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.47 Total: -38.21 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -3.87 Total: 17.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.70 -7.81 -38.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717212128.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.990 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds