Wall clock time and date at job start Mon Mar 30 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00432 * 2 1 4 4 H 1.08999 * 109.46533 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47200 * 119.99243 * 3 2 1 6 6 C 1.53001 * 109.47283 * 294.45068 * 5 3 2 7 7 C 1.52991 * 109.46943 * 239.99675 * 3 2 1 8 8 C 1.50708 * 109.47430 * 66.13255 * 7 3 2 9 9 O 1.21278 * 119.99530 * 5.78504 * 8 7 3 10 10 N 1.34775 * 120.00196 * 185.77679 * 8 7 3 11 11 C 1.46499 * 119.99981 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.01707 * 326.39409 * 11 10 8 13 13 C 1.53871 * 110.06928 * 87.81386 * 11 10 8 14 14 C 1.54272 * 106.59727 * 119.30748 * 13 11 10 15 15 C 1.54892 * 104.19559 * 23.60826 * 14 13 11 16 16 H 1.09003 * 110.91282 * 80.44653 * 15 14 13 17 17 C 1.50699 * 110.75571 * 203.74341 * 15 14 13 18 18 H 1.07996 * 119.99772 * 113.32748 * 17 15 14 19 19 C 1.37875 * 119.99997 * 293.32455 * 17 15 14 20 20 N 1.31518 * 120.00121 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00222 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47383 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.46979 * 300.00782 * 21 19 17 24 24 H 1.48501 * 109.46722 * 60.00392 * 21 19 17 25 25 C 1.54270 * 110.03396 * 205.00482 * 11 10 8 26 26 H 1.07990 * 120.00242 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99872 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99872 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47007 * 54.45310 * 5 3 2 30 30 H 1.09003 * 109.47072 * 174.45117 * 5 3 2 31 31 H 1.09001 * 109.46725 * 65.46602 * 6 5 3 32 32 H 1.08999 * 109.46793 * 185.46454 * 6 5 3 33 33 H 1.08995 * 109.47356 * 305.46416 * 6 5 3 34 34 H 1.08998 * 109.47225 * 306.13183 * 7 3 2 35 35 H 1.09000 * 109.47243 * 186.12986 * 7 3 2 36 36 H 0.97007 * 119.99885 * 0.02562 * 10 8 7 37 37 H 1.09002 * 110.02990 * 238.59069 * 13 11 10 38 38 H 1.08987 * 110.03820 * 0.02562 * 13 11 10 39 39 H 1.09001 * 110.48731 * 264.92902 * 14 13 11 40 40 H 1.09002 * 110.48455 * 142.28080 * 14 13 11 41 41 H 0.97007 * 119.99565 * 359.97438 * 20 19 17 42 42 H 1.09000 * 110.48573 * 98.37867 * 25 11 10 43 43 H 1.09000 * 110.59850 * 335.79234 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1335 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0561 1.4447 2.4946 7 6 2.9433 1.3860 -1.2491 8 6 2.0696 1.4579 -2.4750 9 8 0.8662 1.5516 -2.3573 10 7 2.6257 1.4184 -3.7021 11 6 1.7763 1.4877 -4.8938 12 1 0.8243 0.9925 -4.7027 13 6 1.5372 2.9560 -5.2870 14 6 2.1119 3.1308 -6.7080 15 6 2.0959 1.7008 -7.3028 16 1 1.1006 1.4403 -7.6630 17 6 3.1125 1.5705 -8.4075 18 1 3.9692 0.9253 -8.2796 19 6 2.9490 2.2748 -9.5814 20 7 1.9061 3.0608 -9.7370 21 14 4.2096 2.1139 -10.9506 22 1 3.8068 2.9672 -12.0972 23 1 5.5391 2.5494 -10.4530 24 1 4.2852 0.6973 -11.3897 25 6 2.4879 0.8215 -6.0895 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5836 0.5057 1.3005 30 1 3.5611 2.2827 1.2010 31 1 1.5096 0.5070 2.5957 32 1 2.6777 1.5999 3.3764 33 1 1.3491 2.2687 2.3987 34 1 3.5764 0.5005 -1.3057 35 1 3.5687 2.2771 -1.1960 36 1 3.5882 1.3432 -3.7962 37 1 0.4691 3.1733 -5.2868 38 1 2.0534 3.6177 -4.5916 39 1 3.1314 3.5138 -6.6627 40 1 1.4792 3.7957 -7.2961 41 1 1.2517 3.1446 -9.0258 42 1 2.1299 -0.1989 -6.2262 43 1 3.5684 0.8297 -5.9457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821195806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:39 Heat of formation + Delta-G solvation = -56.611206 kcal Electronic energy + Delta-G solvation = -20178.010238 eV Core-core repulsion = 17221.996285 eV Total energy + Delta-G solvation = -2956.013953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.82732 -37.67957 -36.46456 -33.82303 -32.07502 -31.86198 -30.35318 -28.18498 -26.94708 -24.65175 -23.61558 -21.80759 -20.57961 -19.90241 -19.54619 -19.18446 -16.91585 -16.77437 -15.83571 -15.46766 -14.95879 -14.65420 -14.37918 -13.96178 -13.74261 -13.54708 -13.15851 -12.87035 -12.50863 -12.29142 -12.07931 -12.00425 -11.49707 -11.36329 -11.13956 -10.96073 -10.93689 -10.71891 -10.65372 -10.57927 -10.13582 -10.06621 -9.78360 -9.62399 -9.43216 -9.15436 -8.64398 -8.45673 -8.33369 -6.32602 -4.05003 2.39761 2.89962 3.42953 3.44404 3.47175 3.63393 4.53414 4.60806 4.65412 4.78749 5.07491 5.10532 5.23382 5.32907 5.34896 5.36826 5.45837 5.56655 5.60714 5.68843 5.71431 5.73686 5.77423 5.93138 6.03966 6.16076 6.19468 6.24819 6.43440 6.53123 6.60040 6.69237 6.73048 6.79918 6.89709 7.01494 7.13917 7.33238 7.64674 7.82102 8.24282 8.44137 8.51311 8.89402 9.67156 11.05509 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046660 B = 0.003347 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.945146 B = 8363.317025 C = 8499.043962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.153 4.153 3 C -0.045 4.045 4 H 0.082 0.918 5 C -0.116 4.116 6 C -0.150 4.150 7 C -0.136 4.136 8 C 0.507 3.493 9 O -0.539 6.539 10 N -0.722 5.722 11 C 0.139 3.861 12 H 0.080 0.920 13 C -0.131 4.131 14 C -0.115 4.115 15 C 0.035 3.965 16 H 0.025 0.975 17 C -0.594 4.594 18 H 0.048 0.952 19 C 0.019 3.981 20 N -0.913 5.913 21 Si 1.066 2.934 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.289 1.289 25 C -0.113 4.113 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.396 0.604 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.272 0.728 42 H 0.053 0.947 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 -3.719 20.235 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.063 4.063 4 H 0.101 0.899 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.176 4.176 8 C 0.293 3.707 9 O -0.416 6.416 10 N -0.373 5.373 11 C 0.035 3.965 12 H 0.098 0.902 13 C -0.170 4.170 14 C -0.154 4.154 15 C 0.017 3.983 16 H 0.043 0.957 17 C -0.632 4.632 18 H 0.066 0.934 19 C -0.185 4.185 20 N -0.549 5.549 21 Si 0.895 3.105 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.151 4.151 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.230 0.770 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.477 -3.128 18.781 19.200 hybrid contribution 0.152 -0.598 1.430 1.557 sum 2.629 -3.726 20.211 20.719 Atomic orbital electron populations 1.23724 0.95975 1.01356 0.99237 1.22659 0.96000 0.97126 1.01331 1.20160 0.96616 0.97081 0.92478 0.89924 1.21545 0.97858 1.01899 0.94063 1.21753 0.99788 1.02107 0.97116 1.21731 0.98732 1.04091 0.93053 1.20622 0.89155 0.76209 0.84732 1.90676 1.15057 1.49186 1.86718 1.46358 1.10642 1.74435 1.05836 1.21795 0.94170 0.96774 0.83801 0.90223 1.22584 1.00430 0.95275 0.98722 1.22571 0.99558 1.00779 0.92485 1.19703 0.96936 0.89888 0.91809 0.95658 1.21911 1.09560 1.30439 1.01318 0.93358 1.25774 0.99813 0.93333 0.99592 1.70795 1.11286 1.36063 1.36737 0.83582 0.74899 0.76132 0.75912 1.20834 1.21547 1.21525 1.22621 0.99287 0.98740 0.94473 0.89257 0.88540 0.88149 0.91888 0.91845 0.92519 0.92996 0.92756 0.89238 0.88885 0.76957 0.92552 0.92959 0.92715 0.92624 0.91588 0.92835 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 13.42 29.01 0.39 -1.57 16 2 C -0.15 -1.69 7.00 -36.03 -0.25 -1.94 16 3 C -0.04 -0.46 1.80 -91.78 -0.17 -0.62 16 4 H 0.08 0.99 7.47 -51.93 -0.39 0.61 16 5 C -0.12 -0.92 5.39 -26.73 -0.14 -1.06 16 6 C -0.15 -1.16 9.64 37.16 0.36 -0.80 16 7 C -0.14 -1.39 5.15 -27.88 -0.14 -1.53 16 8 C 0.51 7.38 7.52 -10.98 -0.08 7.30 16 9 O -0.54 -9.72 14.12 5.56 0.08 -9.64 16 10 N -0.72 -10.67 4.99 -52.72 -0.26 -10.93 16 11 C 0.14 2.51 3.24 -66.81 -0.22 2.30 16 12 H 0.08 1.55 7.57 -51.93 -0.39 1.15 16 13 C -0.13 -2.54 6.59 -25.61 -0.17 -2.71 16 14 C -0.12 -2.62 5.69 -25.07 -0.14 -2.76 16 15 C 0.04 0.86 2.37 -89.78 -0.21 0.65 16 16 H 0.03 0.67 7.91 -51.93 -0.41 0.26 16 17 C -0.59 -16.23 8.49 -34.44 -0.29 -16.52 16 18 H 0.05 1.30 7.77 -52.49 -0.41 0.90 16 19 C 0.02 0.54 5.36 -17.82 -0.10 0.45 16 20 N -0.91 -27.15 13.49 55.43 0.75 -26.40 16 21 Si 1.07 24.80 29.90 -169.99 -5.08 19.72 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.11 -2.26 5.94 -25.07 -0.15 -2.40 16 26 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 27 H 0.10 1.22 7.83 -52.49 -0.41 0.80 16 28 H 0.10 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.45 7.58 -51.93 -0.39 0.06 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.40 4.92 8.36 -40.82 -0.34 4.58 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.96 7.92 -51.94 -0.41 0.54 16 39 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 40 H 0.06 1.34 6.66 -51.93 -0.35 1.00 16 41 H 0.27 8.02 5.56 -40.82 -0.23 7.79 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.19 7.63 -51.93 -0.40 0.80 16 LS Contribution 342.98 15.07 5.17 5.17 Total: -1.00 -30.91 342.98 -8.24 -39.15 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.57 Total: 4.17 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -1.32 Total: -21.23 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.48 Total: -37.34 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.91 -8.24 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821195806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.465 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds