Wall clock time and date at job start Mon Mar 30 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 120.00432 * 2 1 4 4 H 1.08999 * 109.46533 * 359.97438 * 3 2 1 5 5 C 1.52997 * 109.47200 * 119.99243 * 3 2 1 6 6 C 1.53001 * 109.47283 * 294.45068 * 5 3 2 7 7 C 1.52991 * 109.46943 * 239.99675 * 3 2 1 8 8 C 1.50708 * 109.47430 * 66.13255 * 7 3 2 9 9 O 1.21278 * 119.99530 * 5.78504 * 8 7 3 10 10 N 1.34775 * 120.00196 * 185.77679 * 8 7 3 11 11 C 1.46499 * 119.99981 * 179.97438 * 10 8 7 12 12 H 1.08997 * 110.01707 * 326.39409 * 11 10 8 13 13 C 1.53871 * 110.06928 * 87.81386 * 11 10 8 14 14 C 1.54272 * 106.59727 * 119.30748 * 13 11 10 15 15 C 1.54892 * 104.19559 * 23.60826 * 14 13 11 16 16 H 1.09003 * 110.91282 * 80.44653 * 15 14 13 17 17 C 1.50699 * 110.75571 * 203.74341 * 15 14 13 18 18 H 1.07996 * 119.99772 * 113.32748 * 17 15 14 19 19 C 1.37875 * 119.99997 * 293.32455 * 17 15 14 20 20 N 1.31518 * 120.00121 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00222 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47383 * 180.02562 * 21 19 17 23 23 H 1.48493 * 109.46979 * 300.00782 * 21 19 17 24 24 H 1.48501 * 109.46722 * 60.00392 * 21 19 17 25 25 C 1.54270 * 110.03396 * 205.00482 * 11 10 8 26 26 H 1.07990 * 120.00242 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.99872 * 0.02562 * 1 2 3 28 28 H 1.07999 * 119.99872 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47007 * 54.45310 * 5 3 2 30 30 H 1.09003 * 109.47072 * 174.45117 * 5 3 2 31 31 H 1.09001 * 109.46725 * 65.46602 * 6 5 3 32 32 H 1.08999 * 109.46793 * 185.46454 * 6 5 3 33 33 H 1.08995 * 109.47356 * 305.46416 * 6 5 3 34 34 H 1.08998 * 109.47225 * 306.13183 * 7 3 2 35 35 H 1.09000 * 109.47243 * 186.12986 * 7 3 2 36 36 H 0.97007 * 119.99885 * 0.02562 * 10 8 7 37 37 H 1.09002 * 110.02990 * 238.59069 * 13 11 10 38 38 H 1.08987 * 110.03820 * 0.02562 * 13 11 10 39 39 H 1.09001 * 110.48731 * 264.92902 * 14 13 11 40 40 H 1.09002 * 110.48455 * 142.28080 * 14 13 11 41 41 H 0.97007 * 119.99565 * 359.97438 * 20 19 17 42 42 H 1.09000 * 110.48573 * 98.37867 * 25 11 10 43 43 H 1.09000 * 110.59850 * 335.79234 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3553 2.1335 -0.0005 5 6 2.9431 1.3861 1.2493 6 6 2.0561 1.4447 2.4946 7 6 2.9433 1.3860 -1.2491 8 6 2.0696 1.4579 -2.4750 9 8 0.8662 1.5516 -2.3573 10 7 2.6257 1.4184 -3.7021 11 6 1.7763 1.4877 -4.8938 12 1 0.8243 0.9925 -4.7027 13 6 1.5372 2.9560 -5.2870 14 6 2.1119 3.1308 -6.7080 15 6 2.0959 1.7008 -7.3028 16 1 1.1006 1.4403 -7.6630 17 6 3.1125 1.5705 -8.4075 18 1 3.9692 0.9253 -8.2796 19 6 2.9490 2.2748 -9.5814 20 7 1.9061 3.0608 -9.7370 21 14 4.2096 2.1139 -10.9506 22 1 3.8068 2.9672 -12.0972 23 1 5.5391 2.5494 -10.4530 24 1 4.2852 0.6973 -11.3897 25 6 2.4879 0.8215 -6.0895 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 3.5836 0.5057 1.3005 30 1 3.5611 2.2827 1.2010 31 1 1.5096 0.5070 2.5957 32 1 2.6777 1.5999 3.3764 33 1 1.3491 2.2687 2.3987 34 1 3.5764 0.5005 -1.3057 35 1 3.5687 2.2771 -1.1960 36 1 3.5882 1.3432 -3.7962 37 1 0.4691 3.1733 -5.2868 38 1 2.0534 3.6177 -4.5916 39 1 3.1314 3.5138 -6.6627 40 1 1.4792 3.7957 -7.2961 41 1 1.2517 3.1446 -9.0258 42 1 2.1299 -0.1989 -6.2262 43 1 3.5684 0.8297 -5.9457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821195806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:35 Heat of formation + Delta-G solvation = -73.963762 kcal Electronic energy + Delta-G solvation = -20178.762701 eV Core-core repulsion = 17221.996285 eV Total energy + Delta-G solvation = -2956.766416 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04796 -39.12454 -37.50596 -35.47572 -33.79776 -32.62347 -31.30255 -29.96982 -28.51618 -25.96432 -25.24196 -22.53692 -21.91117 -21.46092 -20.85368 -20.40428 -18.90244 -17.92544 -17.27573 -16.49665 -16.29729 -15.68971 -15.60516 -15.45839 -14.93648 -14.72917 -14.54238 -14.13457 -14.00693 -13.88226 -13.02871 -12.98175 -12.85754 -12.64793 -12.51977 -12.39499 -12.12376 -12.02990 -11.92793 -11.78756 -11.67449 -11.62325 -11.35130 -11.31928 -10.77070 -10.52832 -10.44800 -10.11987 -9.92064 -8.54821 -6.28174 1.52110 1.55496 1.63073 1.77361 1.81698 2.29884 2.61169 3.23777 3.71038 3.83744 3.88825 3.90875 3.94511 4.05068 4.37391 4.41456 4.46649 4.54593 4.58619 4.63572 4.68501 4.73223 4.84104 4.89558 4.92825 4.96654 5.01562 5.06650 5.08396 5.12108 5.19711 5.23027 5.40641 5.44124 5.47451 5.61474 5.72119 5.82202 6.04843 6.13458 6.27675 6.68380 6.68639 7.38325 7.52820 8.83523 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046660 B = 0.003347 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.945146 B = 8363.317025 C = 8499.043962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.149 4.149 3 C -0.045 4.045 4 H 0.058 0.942 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.127 4.127 8 C 0.502 3.498 9 O -0.578 6.578 10 N -0.715 5.715 11 C 0.152 3.848 12 H 0.067 0.933 13 C -0.121 4.121 14 C -0.105 4.105 15 C 0.022 3.978 16 H -0.006 1.006 17 C -0.603 4.603 18 H 0.051 0.949 19 C -0.034 4.034 20 N -0.942 5.942 21 Si 1.112 2.888 22 H -0.289 1.289 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.100 4.100 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.412 0.588 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.612 -4.530 21.734 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.167 4.167 3 C -0.064 4.064 4 H 0.077 0.923 5 C -0.147 4.147 6 C -0.209 4.209 7 C -0.166 4.166 8 C 0.291 3.709 9 O -0.457 6.457 10 N -0.367 5.367 11 C 0.047 3.953 12 H 0.085 0.915 13 C -0.159 4.159 14 C -0.143 4.143 15 C 0.003 3.997 16 H 0.012 0.988 17 C -0.641 4.641 18 H 0.069 0.931 19 C -0.232 4.232 20 N -0.580 5.580 21 Si 0.935 3.065 22 H -0.215 1.215 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.138 4.138 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.248 0.752 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.126 -3.954 20.317 21.324 hybrid contribution -0.709 -0.358 0.991 1.270 sum 4.417 -4.312 21.308 22.184 Atomic orbital electron populations 1.23735 0.96662 1.00941 1.01036 1.22919 0.95819 0.98214 0.99700 1.20171 0.96620 0.95719 0.93883 0.92309 1.21516 0.97520 1.03213 0.92473 1.21762 0.99859 1.01450 0.97830 1.21780 0.98177 1.06585 0.90093 1.21454 0.89182 0.74779 0.85511 1.90679 1.17099 1.50700 1.87215 1.46195 1.11084 1.74472 1.04923 1.21352 0.94059 0.95229 0.84654 0.91521 1.22472 1.00036 0.96687 0.96744 1.22348 0.98741 0.99085 0.94142 1.19719 0.94772 0.92063 0.93170 0.98787 1.22310 1.09912 1.29736 1.02163 0.93060 1.27203 1.00768 0.92775 1.02426 1.70908 1.12355 1.37982 1.36708 0.82989 0.73510 0.76886 0.73156 1.21502 1.19389 1.19747 1.22437 1.00168 0.98087 0.93075 0.88618 0.90249 0.86598 0.90421 0.90569 0.93123 0.91647 0.93677 0.86467 0.86352 0.75150 0.93092 0.91423 0.93386 0.95157 0.92849 0.92454 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.39 13.42 67.78 0.91 -3.48 16 2 C -0.15 -3.03 7.00 25.65 0.18 -2.85 16 3 C -0.04 -0.82 1.80 -11.54 -0.02 -0.84 16 4 H 0.06 1.37 7.47 -2.39 -0.02 1.35 16 5 C -0.11 -1.39 5.39 30.59 0.16 -1.23 16 6 C -0.15 -2.05 9.64 71.98 0.69 -1.35 16 7 C -0.13 -2.13 5.15 29.85 0.15 -1.97 16 8 C 0.50 13.49 7.52 87.66 0.66 14.15 16 9 O -0.58 -20.38 14.12 -3.02 -0.04 -20.43 16 10 N -0.71 -19.30 4.99 -439.10 -2.19 -21.49 16 11 C 0.15 5.37 3.24 45.72 0.15 5.51 16 12 H 0.07 2.56 7.57 -2.39 -0.02 2.55 16 13 C -0.12 -4.61 6.59 31.32 0.21 -4.40 16 14 C -0.10 -4.82 5.69 31.67 0.18 -4.64 16 15 C 0.02 1.07 2.37 -10.25 -0.02 1.05 16 16 H -0.01 -0.33 7.91 -2.39 -0.02 -0.35 16 17 C -0.60 -32.98 8.49 25.60 0.22 -32.76 16 18 H 0.05 2.71 7.77 -2.91 -0.02 2.69 16 19 C -0.03 -1.90 5.36 84.65 0.45 -1.45 16 20 N -0.94 -57.40 13.49 21.45 0.29 -57.11 16 21 Si 1.11 49.42 29.90 68.60 2.05 51.47 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.10 -3.87 5.94 31.67 0.19 -3.68 16 26 H 0.10 2.03 8.06 -2.92 -0.02 2.01 16 27 H 0.08 2.10 7.83 -2.91 -0.02 2.08 16 28 H 0.12 2.00 8.06 -2.91 -0.02 1.97 16 29 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.73 7.58 -2.39 -0.02 0.72 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.41 8.73 8.36 -92.70 -0.78 7.95 16 37 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.37 7.92 -2.39 -0.02 2.35 16 39 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 40 H 0.03 1.51 6.66 -2.39 -0.02 1.50 16 41 H 0.26 16.02 5.56 -92.70 -0.52 15.51 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.07 2.72 7.63 -2.39 -0.02 2.70 16 Total: -1.00 -68.25 342.98 4.66 -63.59 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.44 Total: 21.90 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 4.11 Total: -37.93 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -1.90 Total: -78.61 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.04 Total: -20.43 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.47 kcal Total: -68.25 4.66 -63.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821195806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.370 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds