Wall clock time and date at job start Mon Mar 30 2020 07:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 C 1.52998 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.61988 * 305.23366 * 4 3 2 6 6 C 1.50753 * 109.54188 * 65.45571 * 4 3 2 7 7 C 1.54178 * 112.60894 * 212.88419 * 6 4 3 8 8 C 1.53813 * 111.97025 * 318.48651 * 7 6 4 9 9 C 1.50821 * 111.62460 * 319.04775 * 8 7 6 10 10 N 1.47635 * 108.05424 * 95.05448 * 9 8 7 11 11 C 1.46904 * 110.99779 * 150.34526 * 10 9 8 12 12 C 1.52991 * 109.47426 * 287.28298 * 11 10 9 13 13 C 1.50702 * 115.54932 * 295.82519 * 12 11 10 14 14 H 1.07998 * 119.99783 * 213.22797 * 13 12 11 15 15 C 1.37872 * 120.00365 * 32.94855 * 13 12 11 16 16 N 1.31521 * 120.00009 * 310.54171 * 15 13 12 17 17 Si 1.86800 * 119.99949 * 130.53836 * 15 13 12 18 18 H 1.48498 * 109.47293 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47209 * 120.00417 * 17 15 13 20 20 H 1.48511 * 109.47015 * 240.00341 * 17 15 13 21 21 C 1.52998 * 117.50013 * 81.48993 * 12 11 10 22 22 C 1.52995 * 117.50078 * 150.14902 * 12 11 10 23 23 C 1.39777 * 114.75568 * 277.19886 * 10 9 8 24 24 H 1.08998 * 109.47458 * 59.99893 * 1 2 3 25 25 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47381 * 299.99848 * 1 2 3 27 27 H 1.09003 * 109.46885 * 240.00306 * 2 1 3 28 28 H 1.08998 * 109.47458 * 120.00107 * 2 1 3 29 29 H 1.09003 * 109.47087 * 60.00429 * 3 2 1 30 30 H 1.09002 * 109.47616 * 300.00395 * 3 2 1 31 31 H 1.09001 * 108.85870 * 333.68960 * 6 4 3 32 32 H 1.09003 * 108.85721 * 92.18373 * 6 4 3 33 33 H 1.08997 * 108.97930 * 79.13171 * 7 6 4 34 34 H 1.09003 * 108.97826 * 197.84917 * 7 6 4 35 35 H 1.09006 * 109.04604 * 79.59508 * 8 7 6 36 36 H 1.08999 * 109.05189 * 198.48890 * 8 7 6 37 37 H 1.08994 * 109.74389 * 335.41268 * 9 8 7 38 38 H 1.09001 * 109.74350 * 214.69743 * 9 8 7 39 39 H 1.08998 * 109.46349 * 167.27666 * 11 10 9 40 40 H 1.09000 * 109.46611 * 47.28677 * 11 10 9 41 41 H 0.96996 * 120.00089 * 189.22286 * 16 15 13 42 42 H 1.09002 * 117.50282 * 215.00659 * 21 12 11 43 43 H 1.09002 * 117.49777 * 0.02562 * 21 12 11 44 44 H 1.09007 * 117.49779 * 359.97438 * 22 12 11 45 45 H 1.09000 * 117.49760 * 144.97182 * 22 12 11 46 46 H 1.09000 * 109.01888 * 182.86921 * 23 10 9 47 47 H 1.09000 * 109.01912 * 301.76472 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9356 0.8504 0.8396 6 6 4.0747 0.8523 -1.2914 7 6 5.3994 0.0835 -1.1141 8 6 6.3722 0.8214 -0.1787 9 6 6.3681 2.3080 -0.4331 10 7 5.4279 2.9324 0.5185 11 6 5.8410 4.3043 0.8432 12 6 7.0731 4.2650 1.7492 13 6 6.8633 3.6414 3.1050 14 1 7.4125 4.0089 3.9592 15 6 5.9660 2.6056 3.2560 16 7 4.7486 2.7141 2.7704 17 14 6.4795 1.0480 4.1504 18 1 7.8897 1.1761 4.5978 19 1 5.6026 0.8433 5.3312 20 1 6.3541 -0.1135 3.2334 21 6 8.4348 4.0624 1.0816 22 6 8.0583 5.4316 1.6530 23 6 4.0865 2.8923 0.1275 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6765 1.9564 -0.8899 31 1 3.3214 0.1699 -1.6850 32 1 4.2299 1.6574 -2.0097 33 1 5.1850 -0.9008 -0.6979 34 1 5.8705 -0.0405 -2.0892 35 1 6.0807 0.6366 0.8552 36 1 7.3794 0.4360 -0.3373 37 1 6.0438 2.5058 -1.4547 38 1 7.3693 2.7106 -0.2795 39 1 5.0278 4.8163 1.3575 40 1 6.0826 4.8380 -0.0760 41 1 4.0779 2.0484 2.9895 42 1 9.1789 3.4781 1.6230 43 1 8.4528 3.9575 -0.0032 44 1 7.8288 6.2270 0.9438 45 1 8.5543 5.7484 2.5704 46 1 3.4849 3.4204 0.8674 47 1 3.9823 3.3910 -0.8361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703251516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:29 Heat of formation + Delta-G solvation = 40.789019 kcal Electronic energy + Delta-G solvation = -22520.937467 eV Core-core repulsion = 19704.980200 eV Total energy + Delta-G solvation = -2815.957267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 265.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.09644 -36.64308 -34.76923 -33.10512 -32.01766 -31.20595 -27.31420 -26.23271 -25.02027 -24.32563 -22.82069 -21.16476 -20.74933 -19.75667 -18.88428 -18.49539 -16.14928 -15.26525 -14.92081 -14.50075 -14.34592 -14.20539 -13.85353 -13.57169 -13.37102 -12.82167 -12.79574 -12.47869 -12.14279 -11.65583 -11.58925 -11.27573 -11.21369 -11.10627 -10.89022 -10.74305 -10.57906 -10.36372 -10.27631 -10.14188 -10.10290 -9.97483 -9.84209 -9.56089 -9.46591 -9.38542 -8.58493 -8.35187 -7.87391 -6.47818 -6.06955 -3.56944 3.40127 3.53643 3.63087 4.60562 4.81363 5.09929 5.11777 5.26957 5.30843 5.40475 5.46896 5.52927 5.64421 5.75022 5.79172 5.94359 5.97886 6.03713 6.12202 6.14769 6.20560 6.24393 6.28503 6.34051 6.37714 6.40980 6.46673 6.53325 6.62837 6.65681 6.68979 6.72314 6.77675 6.80798 6.87273 7.04322 7.05950 7.13105 7.18757 7.24324 7.41665 7.70415 8.05142 8.50646 8.75443 8.86674 9.23641 9.81689 10.96130 Molecular weight = 265.21amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.007764 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.901377 B = 3605.460897 C = 4041.459331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.108 4.108 4 C -0.083 4.083 5 H 0.081 0.919 6 C -0.114 4.114 7 C -0.113 4.113 8 C -0.115 4.115 9 C 0.054 3.946 10 N -0.495 5.495 11 C 0.130 3.870 12 C 0.073 3.927 13 C -0.571 4.571 14 H 0.057 0.943 15 C 0.150 3.850 16 N -0.758 5.758 17 Si 0.825 3.175 18 H -0.275 1.275 19 H -0.294 1.294 20 H -0.281 1.281 21 C -0.228 4.228 22 C -0.215 4.215 23 C 0.110 3.890 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.014 0.986 38 H 0.082 0.918 39 H 0.073 0.927 40 H -0.014 1.014 41 H 0.257 0.743 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.080 0.920 47 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 -3.930 -7.870 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.146 4.146 4 C -0.102 4.102 5 H 0.100 0.900 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.153 4.153 9 C -0.073 4.073 10 N -0.216 5.216 11 C 0.003 3.997 12 C 0.072 3.928 13 C -0.603 4.603 14 H 0.075 0.925 15 C -0.067 4.067 16 N -0.384 5.384 17 Si 0.650 3.350 18 H -0.200 1.200 19 H -0.221 1.221 20 H -0.207 1.207 21 C -0.265 4.265 22 C -0.253 4.253 23 C -0.020 4.020 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.004 0.996 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.099 0.901 47 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -5.782 -4.298 -7.644 10.504 hybrid contribution 0.464 -0.639 -0.313 0.849 sum -5.318 -4.936 -7.957 10.769 Atomic orbital electron populations 1.21773 0.96520 1.00926 1.01564 1.21592 0.95062 0.97821 1.01787 1.21580 0.95741 0.95782 1.01528 1.21034 0.93456 0.98008 0.97670 0.90033 1.21543 0.96282 0.99138 0.98175 1.21889 0.95799 0.98500 0.98876 1.21397 0.97278 0.95607 1.01010 1.22004 0.98378 0.94653 0.92269 1.58340 1.00391 1.20186 1.42675 1.21276 0.97944 0.86960 0.93476 1.18923 0.85072 0.93428 0.95389 1.19705 1.29111 1.19310 0.92126 0.92534 1.24438 0.93392 0.96967 0.91854 1.70326 1.00995 1.32174 1.34898 0.87737 0.80285 0.87427 0.79510 1.20037 1.22111 1.20686 1.23212 1.06619 0.99843 0.96861 1.22816 1.10129 0.91199 1.01157 1.20705 0.91007 0.94412 0.95849 0.93139 0.93363 0.92792 0.92253 0.92160 0.91670 0.92974 0.92873 0.93214 0.93249 0.93502 0.90283 0.93486 0.96784 0.89978 0.90830 0.99591 0.93260 0.90847 0.92152 0.92087 0.90873 0.90133 1.00340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.13 -1.60 5.74 -26.73 -0.15 -1.75 16 3 C -0.11 -1.57 4.59 -26.73 -0.12 -1.69 16 4 C -0.08 -1.39 1.91 -91.00 -0.17 -1.57 16 5 H 0.08 1.59 7.11 -51.92 -0.37 1.22 16 6 C -0.11 -1.76 4.76 -27.24 -0.13 -1.89 16 7 C -0.11 -1.79 5.91 -25.69 -0.15 -1.94 16 8 C -0.11 -2.15 5.41 -27.40 -0.15 -2.30 16 9 C 0.05 1.07 5.14 -4.51 -0.02 1.04 16 10 N -0.49 -10.46 1.35 -240.01 -0.32 -10.78 16 11 C 0.13 2.96 4.05 -3.83 -0.02 2.95 16 12 C 0.07 1.78 2.05 -155.67 -0.32 1.46 16 13 C -0.57 -15.40 8.84 -34.44 -0.30 -15.70 16 14 H 0.06 1.62 8.06 -52.49 -0.42 1.19 16 15 C 0.15 3.87 4.62 -17.82 -0.08 3.79 16 16 N -0.76 -18.69 8.48 55.43 0.47 -18.22 16 17 Si 0.82 20.05 29.69 -169.99 -5.05 15.01 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 C -0.23 -5.09 8.52 -26.70 -0.23 -5.32 16 22 C -0.22 -4.78 9.93 -26.70 -0.27 -5.05 16 23 C 0.11 2.13 3.29 -6.75 -0.02 2.11 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.73 6.27 -51.93 -0.33 0.41 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.74 5.79 -51.93 -0.30 0.44 16 32 H 0.05 0.79 6.57 -51.93 -0.34 0.45 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.73 7.26 -51.93 -0.38 1.35 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.01 0.27 6.66 -51.93 -0.35 -0.08 16 38 H 0.08 1.70 4.12 -51.93 -0.21 1.49 16 39 H 0.07 1.78 7.35 -51.93 -0.38 1.39 16 40 H -0.01 -0.30 8.00 -51.93 -0.42 -0.72 16 41 H 0.26 6.11 8.33 -40.82 -0.34 5.77 16 42 H 0.07 1.69 8.14 -51.93 -0.42 1.26 16 43 H 0.06 1.26 6.54 -51.93 -0.34 0.92 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 46 H 0.08 1.67 6.72 -51.93 -0.35 1.33 16 47 H -0.02 -0.40 7.54 -51.93 -0.39 -0.79 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -25.21 339.45 -10.33 -35.54 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.78 Total: 0.49 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -1.77 Total: -27.15 kcal Atomic # 7 Polarization: -29.15 SS G_CDS: 0.15 Total: -29.01 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.05 Total: 15.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -25.21 -10.33 -35.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703251516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.333 kcal (2) G-P(sol) polarization free energy of solvation -25.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds