Wall clock time and date at job start Mon Mar 30 2020 07:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 C 1.52998 * 109.47298 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.61988 * 305.23366 * 4 3 2 6 6 C 1.50753 * 109.54188 * 65.45571 * 4 3 2 7 7 C 1.54178 * 112.60894 * 212.88419 * 6 4 3 8 8 C 1.53813 * 111.97025 * 318.48651 * 7 6 4 9 9 C 1.50821 * 111.62460 * 319.04775 * 8 7 6 10 10 N 1.47635 * 108.05424 * 95.05448 * 9 8 7 11 11 C 1.46904 * 110.99779 * 150.34526 * 10 9 8 12 12 C 1.52991 * 109.47426 * 287.28298 * 11 10 9 13 13 C 1.50702 * 115.54932 * 295.82519 * 12 11 10 14 14 H 1.07998 * 119.99783 * 213.22797 * 13 12 11 15 15 C 1.37872 * 120.00365 * 32.94855 * 13 12 11 16 16 N 1.31521 * 120.00009 * 310.54171 * 15 13 12 17 17 Si 1.86800 * 119.99949 * 130.53836 * 15 13 12 18 18 H 1.48498 * 109.47293 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47209 * 120.00417 * 17 15 13 20 20 H 1.48511 * 109.47015 * 240.00341 * 17 15 13 21 21 C 1.52998 * 117.50013 * 81.48993 * 12 11 10 22 22 C 1.52995 * 117.50078 * 150.14902 * 12 11 10 23 23 C 1.39777 * 114.75568 * 277.19886 * 10 9 8 24 24 H 1.08998 * 109.47458 * 59.99893 * 1 2 3 25 25 H 1.09001 * 109.47222 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47381 * 299.99848 * 1 2 3 27 27 H 1.09003 * 109.46885 * 240.00306 * 2 1 3 28 28 H 1.08998 * 109.47458 * 120.00107 * 2 1 3 29 29 H 1.09003 * 109.47087 * 60.00429 * 3 2 1 30 30 H 1.09002 * 109.47616 * 300.00395 * 3 2 1 31 31 H 1.09001 * 108.85870 * 333.68960 * 6 4 3 32 32 H 1.09003 * 108.85721 * 92.18373 * 6 4 3 33 33 H 1.08997 * 108.97930 * 79.13171 * 7 6 4 34 34 H 1.09003 * 108.97826 * 197.84917 * 7 6 4 35 35 H 1.09006 * 109.04604 * 79.59508 * 8 7 6 36 36 H 1.08999 * 109.05189 * 198.48890 * 8 7 6 37 37 H 1.08994 * 109.74389 * 335.41268 * 9 8 7 38 38 H 1.09001 * 109.74350 * 214.69743 * 9 8 7 39 39 H 1.08998 * 109.46349 * 167.27666 * 11 10 9 40 40 H 1.09000 * 109.46611 * 47.28677 * 11 10 9 41 41 H 0.96996 * 120.00089 * 189.22286 * 16 15 13 42 42 H 1.09002 * 117.50282 * 215.00659 * 21 12 11 43 43 H 1.09002 * 117.49777 * 0.02562 * 21 12 11 44 44 H 1.09007 * 117.49779 * 359.97438 * 22 12 11 45 45 H 1.09000 * 117.49760 * 144.97182 * 22 12 11 46 46 H 1.09000 * 109.01888 * 182.86921 * 23 10 9 47 47 H 1.09000 * 109.01912 * 301.76472 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9356 0.8504 0.8396 6 6 4.0747 0.8523 -1.2914 7 6 5.3994 0.0835 -1.1141 8 6 6.3722 0.8214 -0.1787 9 6 6.3681 2.3080 -0.4331 10 7 5.4279 2.9324 0.5185 11 6 5.8410 4.3043 0.8432 12 6 7.0731 4.2650 1.7492 13 6 6.8633 3.6414 3.1050 14 1 7.4125 4.0089 3.9592 15 6 5.9660 2.6056 3.2560 16 7 4.7486 2.7141 2.7704 17 14 6.4795 1.0480 4.1504 18 1 7.8897 1.1761 4.5978 19 1 5.6026 0.8433 5.3312 20 1 6.3541 -0.1135 3.2334 21 6 8.4348 4.0624 1.0816 22 6 8.0583 5.4316 1.6530 23 6 4.0865 2.8923 0.1275 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6765 1.9564 -0.8899 31 1 3.3214 0.1699 -1.6850 32 1 4.2299 1.6574 -2.0097 33 1 5.1850 -0.9008 -0.6979 34 1 5.8705 -0.0405 -2.0892 35 1 6.0807 0.6366 0.8552 36 1 7.3794 0.4360 -0.3373 37 1 6.0438 2.5058 -1.4547 38 1 7.3693 2.7106 -0.2795 39 1 5.0278 4.8163 1.3575 40 1 6.0826 4.8380 -0.0760 41 1 4.0779 2.0484 2.9895 42 1 9.1789 3.4781 1.6230 43 1 8.4528 3.9575 -0.0032 44 1 7.8288 6.2270 0.9438 45 1 8.5543 5.7484 2.5704 46 1 3.4849 3.4204 0.8674 47 1 3.9823 3.3910 -0.8361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703251516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:29 Heat of formation + Delta-G solvation = 32.322584 kcal Electronic energy + Delta-G solvation = -22521.304599 eV Core-core repulsion = 19704.980200 eV Total energy + Delta-G solvation = -2816.324400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 265.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61967 -38.28299 -36.11889 -34.61086 -33.97926 -32.45759 -28.80630 -27.72751 -26.86963 -25.76914 -24.20787 -22.91409 -21.93079 -21.26730 -20.71097 -19.92375 -18.06773 -16.66678 -16.48842 -16.23748 -15.85099 -15.66720 -15.31946 -15.25563 -14.67236 -14.38978 -14.17479 -13.71345 -13.56868 -13.46513 -13.06990 -12.84596 -12.77363 -12.63111 -12.47475 -12.17440 -12.10656 -11.99534 -11.93407 -11.70212 -11.56582 -11.47103 -11.26362 -11.20045 -10.93425 -10.83951 -10.39726 -10.19561 -9.80846 -8.16113 -8.07484 -5.62694 1.41013 1.52360 1.61324 2.59267 3.04010 3.40411 3.77614 3.91709 3.98533 4.10943 4.21849 4.27440 4.38810 4.41498 4.44476 4.53562 4.60961 4.69310 4.78701 4.82011 4.83147 4.84661 4.88542 4.93181 4.96716 5.00816 5.06365 5.11639 5.15373 5.19334 5.26429 5.27759 5.30618 5.38394 5.44420 5.46519 5.54418 5.59114 5.62220 5.71584 5.78092 5.87289 6.02577 6.70374 6.85136 7.18090 7.26276 7.76505 8.93779 Molecular weight = 265.21amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.007764 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.901377 B = 3605.460897 C = 4041.459331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.074 4.074 5 H 0.053 0.947 6 C -0.110 4.110 7 C -0.108 4.108 8 C -0.112 4.112 9 C 0.057 3.943 10 N -0.507 5.507 11 C 0.140 3.860 12 C 0.049 3.951 13 C -0.604 4.604 14 H 0.028 0.972 15 C 0.133 3.867 16 N -0.749 5.749 17 Si 0.863 3.137 18 H -0.291 1.291 19 H -0.291 1.291 20 H -0.278 1.278 21 C -0.213 4.213 22 C -0.207 4.207 23 C 0.113 3.887 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.028 0.972 38 H 0.070 0.930 39 H 0.051 0.949 40 H -0.004 1.004 41 H 0.261 0.739 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.059 0.941 47 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -5.008 -9.954 12.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.093 4.093 5 H 0.072 0.928 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.150 4.150 9 C -0.070 4.070 10 N -0.229 5.229 11 C 0.013 3.987 12 C 0.047 3.953 13 C -0.636 4.636 14 H 0.046 0.954 15 C -0.084 4.084 16 N -0.374 5.374 17 Si 0.690 3.310 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.251 4.251 22 C -0.245 4.245 23 C -0.017 4.017 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.014 0.986 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges -6.646 -5.380 -9.729 12.953 hybrid contribution 0.738 -0.272 0.380 0.873 sum -5.908 -5.652 -9.350 12.421 Atomic orbital electron populations 1.21744 0.95017 1.01879 1.01857 1.21549 0.96366 0.96294 1.01660 1.21525 0.93935 0.97155 1.01459 1.20922 0.95008 0.95783 0.97609 0.92812 1.21498 0.96701 0.99484 0.97028 1.21855 0.95326 0.98261 0.99150 1.21337 0.98603 0.95323 0.99722 1.21978 0.97364 0.95089 0.92542 1.58288 1.01435 1.19318 1.43866 1.21057 0.96476 0.87936 0.93226 1.18978 0.86437 0.94988 0.94882 1.19716 1.29904 1.21243 0.92759 0.95369 1.24628 0.93474 0.97564 0.92756 1.70326 1.00744 1.32100 1.34213 0.87156 0.78944 0.85943 0.78991 1.21744 1.21843 1.20364 1.23112 1.04717 0.99545 0.97677 1.22845 1.08791 0.91536 1.01344 1.20680 0.89822 0.95993 0.95165 0.92207 0.92108 0.93184 0.91282 0.93346 0.92999 0.91792 0.90601 0.93241 0.92624 0.91343 0.93791 0.92736 0.95390 0.91138 0.93051 0.98613 0.92870 0.91985 0.90229 0.89980 0.91560 0.92301 0.99897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.91 71.98 0.71 -2.16 16 2 C -0.12 -2.83 5.74 30.59 0.18 -2.65 16 3 C -0.10 -2.80 4.59 30.59 0.14 -2.66 16 4 C -0.07 -2.40 1.91 -11.04 -0.02 -2.43 16 5 H 0.05 2.07 7.11 -2.38 -0.02 2.05 16 6 C -0.11 -3.07 4.76 30.26 0.14 -2.93 16 7 C -0.11 -3.12 5.91 31.27 0.18 -2.93 16 8 C -0.11 -4.02 5.41 30.16 0.16 -3.86 16 9 C 0.06 2.17 5.14 85.45 0.44 2.61 16 10 N -0.51 -21.28 1.35 -913.24 -1.23 -22.51 16 11 C 0.14 6.37 4.05 86.30 0.35 6.72 16 12 C 0.05 2.37 2.05 -52.93 -0.11 2.26 16 13 C -0.60 -33.48 8.84 25.60 0.23 -33.26 16 14 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 15 C 0.13 7.00 4.62 84.65 0.39 7.39 16 16 N -0.75 -37.44 8.48 21.45 0.18 -37.25 16 17 Si 0.86 41.92 29.69 68.60 2.04 43.96 16 18 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 C -0.21 -9.39 8.52 30.62 0.26 -9.13 16 22 C -0.21 -9.12 9.93 30.61 0.30 -8.82 16 23 C 0.11 4.30 3.29 88.07 0.29 4.59 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 27 H 0.07 1.48 6.27 -2.39 -0.01 1.46 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.54 8.05 -2.39 -0.02 1.52 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.80 5.79 -2.39 -0.01 1.79 16 32 H 0.05 1.41 6.57 -2.39 -0.02 1.39 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.90 7.26 -2.38 -0.02 1.88 16 36 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.03 0.99 6.66 -2.39 -0.02 0.97 16 38 H 0.07 2.83 4.12 -2.39 -0.01 2.82 16 39 H 0.05 2.52 7.35 -2.39 -0.02 2.50 16 40 H 0.00 -0.17 8.00 -2.39 -0.02 -0.19 16 41 H 0.26 12.53 8.33 -92.71 -0.77 11.76 16 42 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.08 3.19 6.54 -2.39 -0.02 3.17 16 44 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 45 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 46 H 0.06 2.47 6.72 -2.39 -0.02 2.46 16 47 H -0.02 -0.61 7.54 -2.39 -0.02 -0.63 16 Total: -1.00 -54.10 339.45 5.54 -48.55 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.90 Total: 14.49 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 3.65 Total: -47.24 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -1.05 Total: -59.76 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.04 Total: 43.96 kcal Total: -54.10 5.54 -48.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703251516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.876 kcal (2) G-P(sol) polarization free energy of solvation -54.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds