Wall clock time and date at job start Mon Mar 30 2020 06:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48498 * 109.47046 * 240.00165 * 3 2 1 5 5 H 1.48499 * 109.46861 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47068 * 120.00193 * 3 2 1 7 7 C 1.37875 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00232 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46839 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47215 * 54.99824 * 10 9 7 12 12 O 1.42905 * 109.46964 * 294.99389 * 10 9 7 13 13 C 1.50703 * 109.47031 * 174.99956 * 10 9 7 14 14 C 1.36761 * 119.79808 * 94.95205 * 13 10 9 15 15 C 1.39369 * 119.73310 * 179.97438 * 14 13 10 16 16 C 1.46801 * 134.35595 * 180.02562 * 15 14 13 17 17 C 1.33986 * 106.18690 * 180.02562 * 16 15 14 18 18 O 1.34464 * 110.16475 * 0.23005 * 17 16 15 19 19 C 1.34814 * 110.88594 * 359.60713 * 18 17 16 20 20 C 1.38893 * 133.48192 * 180.10784 * 19 18 17 21 21 C 1.38004 * 119.80537 * 180.29419 * 20 19 18 22 22 Cl 1.73600 * 119.67359 * 180.02562 * 21 20 19 23 23 H 0.97006 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47210 * 60.00096 * 9 7 2 25 25 H 1.08997 * 109.46696 * 300.00146 * 9 7 2 26 26 H 0.96694 * 114.00515 * 300.00072 * 12 10 9 27 27 H 1.07997 * 120.12959 * 0.05012 * 14 13 10 28 28 H 1.07996 * 126.90763 * 0.05904 * 16 15 14 29 29 H 1.08002 * 124.91453 * 179.97438 * 17 16 15 30 30 H 1.07999 * 120.10336 * 0.27977 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 1 2.9287 -3.5555 0.8409 12 8 2.9884 -3.6536 -1.2220 13 6 1.4958 -4.9637 0.1212 14 6 1.1690 -5.6685 -1.0043 15 6 0.4764 -6.8724 -0.8893 16 6 -0.0242 -7.8642 -1.8488 17 6 -0.6174 -8.8208 -1.1221 18 8 -0.5412 -8.5228 0.1869 19 6 0.1139 -7.3601 0.3778 20 6 0.4543 -6.6294 1.5089 21 6 1.1407 -5.4396 1.3759 22 17 1.5650 -4.5293 2.7920 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5574 0.8880 26 1 2.4431 -3.7447 -2.0153 27 1 1.4477 -5.2942 -1.9783 28 1 0.0678 -7.8300 -2.9243 29 1 -1.0921 -9.7015 -1.5290 30 1 0.1825 -6.9910 2.4895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259385394.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:25 Heat of formation + Delta-G solvation = -34.218476 kcal Electronic energy + Delta-G solvation = -17379.325948 eV Core-core repulsion = 14359.774236 eV Total energy + Delta-G solvation = -3019.551712 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 266.050 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.42061 -38.80602 -36.38559 -35.77345 -32.89317 -32.68534 -30.98656 -29.37353 -28.55849 -25.06943 -22.98983 -22.14532 -21.37204 -20.56296 -17.70734 -17.29037 -16.75264 -16.10872 -15.89288 -14.90999 -14.60281 -14.28303 -14.01677 -13.47451 -13.36343 -13.03958 -12.87288 -12.45623 -12.14865 -11.29151 -11.23365 -11.08221 -10.86730 -10.81131 -10.47320 -10.36280 -10.15542 -10.02523 -9.17129 -9.09462 -8.36859 -8.18658 -8.11774 -5.99237 -4.00742 0.85071 1.38371 2.14407 2.31061 2.96736 3.36320 3.39959 3.43538 3.68153 4.43204 4.48809 4.65017 4.95142 5.01217 5.19764 5.27925 5.36300 5.41867 5.61623 5.75214 6.05515 6.08965 6.15320 6.36324 6.51447 6.58450 6.70594 7.10408 7.53572 7.60953 7.97325 8.32699 8.42332 9.04855 9.62556 11.12022 Molecular weight = 266.05amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.005442 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.656217 B = 5144.052959 C = 5604.763702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.060 0.940 9 C 0.004 3.996 10 C 0.144 3.856 11 H 0.106 0.894 12 O -0.552 6.552 13 C -0.101 4.101 14 C -0.059 4.059 15 C -0.126 4.126 16 C -0.206 4.206 17 C 0.002 3.998 18 O -0.195 6.195 19 C 0.049 3.951 20 C -0.102 4.102 21 C 0.000 4.000 22 Cl -0.043 7.043 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.032 0.968 26 H 0.364 0.636 27 H 0.136 0.864 28 H 0.158 0.842 29 H 0.207 0.793 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -16.490 -0.939 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.079 0.921 9 C -0.033 4.033 10 C 0.085 3.915 11 H 0.124 0.876 12 O -0.357 6.357 13 C -0.102 4.102 14 C -0.077 4.077 15 C -0.127 4.127 16 C -0.225 4.225 17 C -0.063 4.063 18 O -0.097 6.097 19 C 0.002 3.998 20 C -0.121 4.121 21 C -0.027 4.027 22 Cl -0.014 7.014 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.211 0.789 27 H 0.153 0.847 28 H 0.176 0.824 29 H 0.224 0.776 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.555 -16.361 -0.169 16.372 hybrid contribution -0.201 0.910 -0.432 1.027 sum -0.756 -15.451 -0.601 15.482 Atomic orbital electron populations 1.69959 1.06040 1.26735 1.50913 1.24993 0.94814 0.99219 0.95378 0.86629 0.79524 0.82985 0.78710 1.20196 1.21415 1.20223 1.21070 0.93234 0.90171 1.50345 0.92144 1.19728 0.93813 0.91359 0.98411 1.21273 0.93939 0.88914 0.87339 0.87643 1.86554 1.37460 1.96275 1.15431 1.20584 0.99616 0.99079 0.90950 1.19929 0.96692 0.92305 0.98747 1.19956 1.02853 0.97200 0.92726 1.22516 1.04846 0.95010 1.00084 1.23918 1.01830 1.00680 0.79884 1.83979 1.63465 1.35227 1.27034 1.19197 0.98519 0.86959 0.95129 1.19519 1.02189 0.93677 0.96707 1.20264 1.00809 0.92973 0.88687 1.98393 1.91547 1.73277 1.38205 0.92972 0.96261 0.94941 0.78922 0.84659 0.82391 0.77643 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.27 8.88 -34.44 -0.31 -14.58 16 8 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 9 C 0.00 0.10 4.64 -27.88 -0.13 -0.03 16 10 C 0.14 3.00 2.65 -27.88 -0.07 2.93 16 11 H 0.11 2.27 7.09 -51.93 -0.37 1.90 16 12 O -0.55 -11.08 12.73 -35.23 -0.45 -11.53 16 13 C -0.10 -1.84 5.04 -104.94 -0.53 -2.37 16 14 C -0.06 -0.94 9.30 -39.70 -0.37 -1.31 16 15 C -0.13 -1.90 6.40 -105.15 -0.67 -2.57 16 16 C -0.21 -2.36 11.14 -37.62 -0.42 -2.78 16 17 C 0.00 0.02 11.96 29.24 0.35 0.37 16 18 O -0.20 -2.60 10.58 3.85 0.04 -2.56 16 19 C 0.05 0.75 7.42 -38.48 -0.29 0.46 16 20 C -0.10 -1.55 9.84 -39.42 -0.39 -1.93 16 21 C 0.00 0.00 6.31 -39.46 -0.25 -0.25 16 22 Cl -0.04 -0.74 27.10 -51.86 -1.41 -2.14 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.87 7.91 -51.93 -0.41 0.46 16 26 H 0.36 6.09 7.30 45.56 0.33 6.42 16 27 H 0.14 1.91 6.36 -52.49 -0.33 1.57 16 28 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -32.05 280.60 -7.05 -39.10 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -2.01 Total: 2.67 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -3.17 Total: -20.54 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.74 Total: -26.00 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.41 Total: -14.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.41 Total: -2.14 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.05 -7.05 -39.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259385394.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.880 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds