Wall clock time and date at job start Mon Mar 30 2020 06:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48498 * 109.47046 * 240.00165 * 3 2 1 5 5 H 1.48499 * 109.46861 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47068 * 120.00193 * 3 2 1 7 7 C 1.37875 * 120.00160 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00232 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99794 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46839 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47215 * 54.99824 * 10 9 7 12 12 O 1.42905 * 109.46964 * 294.99389 * 10 9 7 13 13 C 1.50703 * 109.47031 * 174.99956 * 10 9 7 14 14 C 1.36761 * 119.79808 * 94.95205 * 13 10 9 15 15 C 1.39369 * 119.73310 * 179.97438 * 14 13 10 16 16 C 1.46801 * 134.35595 * 180.02562 * 15 14 13 17 17 C 1.33986 * 106.18690 * 180.02562 * 16 15 14 18 18 O 1.34464 * 110.16475 * 0.23005 * 17 16 15 19 19 C 1.34814 * 110.88594 * 359.60713 * 18 17 16 20 20 C 1.38893 * 133.48192 * 180.10784 * 19 18 17 21 21 C 1.38004 * 119.80537 * 180.29419 * 20 19 18 22 22 Cl 1.73600 * 119.67359 * 180.02562 * 21 20 19 23 23 H 0.97006 * 120.00022 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47210 * 60.00096 * 9 7 2 25 25 H 1.08997 * 109.46696 * 300.00146 * 9 7 2 26 26 H 0.96694 * 114.00515 * 300.00072 * 12 10 9 27 27 H 1.07997 * 120.12959 * 0.05012 * 14 13 10 28 28 H 1.07996 * 126.90763 * 0.05904 * 16 15 14 29 29 H 1.08002 * 124.91453 * 179.97438 * 17 16 15 30 30 H 1.07999 * 120.10336 * 0.27977 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 1 2.9287 -3.5555 0.8409 12 8 2.9884 -3.6536 -1.2220 13 6 1.4958 -4.9637 0.1212 14 6 1.1690 -5.6685 -1.0043 15 6 0.4764 -6.8724 -0.8893 16 6 -0.0242 -7.8642 -1.8488 17 6 -0.6174 -8.8208 -1.1221 18 8 -0.5412 -8.5228 0.1869 19 6 0.1139 -7.3601 0.3778 20 6 0.4543 -6.6294 1.5089 21 6 1.1407 -5.4396 1.3759 22 17 1.5650 -4.5293 2.7920 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5574 0.8880 26 1 2.4431 -3.7447 -2.0153 27 1 1.4477 -5.2942 -1.9783 28 1 0.0678 -7.8300 -2.9243 29 1 -1.0921 -9.7015 -1.5290 30 1 0.1825 -6.9910 2.4895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259385394.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:25 Heat of formation + Delta-G solvation = -55.091509 kcal Electronic energy + Delta-G solvation = -17380.231070 eV Core-core repulsion = 14359.774236 eV Total energy + Delta-G solvation = -3020.456835 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 266.050 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.45321 -40.15802 -37.82910 -37.12048 -34.98007 -33.73974 -32.48663 -30.76748 -30.00490 -26.81681 -24.41207 -23.58142 -22.36929 -22.11204 -18.99883 -18.63750 -18.08159 -17.72741 -17.13828 -16.69741 -16.12144 -15.66607 -15.33931 -14.98332 -14.61187 -14.48291 -14.11803 -13.76501 -13.72140 -13.12223 -12.79376 -12.64432 -12.47646 -12.35315 -12.25782 -12.06315 -11.81780 -11.21009 -11.06366 -10.79721 -10.55685 -9.53084 -9.18922 -8.17564 -6.26606 -0.26809 0.12868 0.91512 1.38784 1.41291 1.43730 1.51669 1.94373 2.41065 2.47629 3.15413 3.40816 3.54966 3.60610 3.82370 3.96300 4.18576 4.31418 4.52095 4.62983 4.69245 4.75619 4.85578 5.06909 5.21200 5.35674 5.42294 5.45069 5.63947 5.79199 6.07264 6.23076 6.83215 6.90129 7.41018 8.93622 Molecular weight = 266.05amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.005442 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.656217 B = 5144.052959 C = 5604.763702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.014 3.986 10 C 0.161 3.839 11 H 0.094 0.906 12 O -0.560 6.560 13 C -0.124 4.124 14 C -0.064 4.064 15 C -0.137 4.137 16 C -0.220 4.220 17 C 0.024 3.976 18 O -0.200 6.200 19 C 0.036 3.964 20 C -0.096 4.096 21 C -0.019 4.019 22 Cl -0.054 7.054 23 H 0.263 0.737 24 H -0.002 1.002 25 H 0.010 0.990 26 H 0.378 0.622 27 H 0.150 0.850 28 H 0.186 0.814 29 H 0.260 0.740 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -18.127 -1.946 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.102 3.898 11 H 0.112 0.888 12 O -0.366 6.366 13 C -0.125 4.125 14 C -0.082 4.082 15 C -0.138 4.138 16 C -0.239 4.239 17 C -0.040 4.040 18 O -0.102 6.102 19 C -0.012 4.012 20 C -0.115 4.115 21 C -0.046 4.046 22 Cl -0.024 7.024 23 H 0.071 0.929 24 H 0.017 0.983 25 H 0.028 0.972 26 H 0.227 0.773 27 H 0.167 0.833 28 H 0.203 0.797 29 H 0.276 0.724 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.741 -18.014 -1.185 18.068 hybrid contribution -0.218 1.251 -0.191 1.284 sum -0.959 -16.763 -1.377 16.846 Atomic orbital electron populations 1.70082 1.07572 1.27688 1.51863 1.25845 0.95654 1.02898 0.94919 0.85588 0.78338 0.78572 0.79089 1.19321 1.20834 1.19482 1.21421 0.93264 0.91703 1.50075 0.92562 1.19539 0.94016 0.92580 0.96195 1.20775 0.92696 0.89049 0.87313 0.88847 1.86501 1.37918 1.96323 1.15889 1.20324 1.01247 0.98568 0.92352 1.20098 0.96625 0.92787 0.98666 1.20358 1.02174 0.97186 0.94125 1.22889 1.05447 0.94314 1.01248 1.24994 0.99576 1.01257 0.78177 1.84015 1.62959 1.34199 1.29015 1.19341 0.98879 0.87793 0.95160 1.19678 1.01025 0.92830 0.98003 1.20325 1.02280 0.93942 0.88084 1.98377 1.91766 1.73725 1.38576 0.92853 0.98319 0.97195 0.77337 0.83253 0.79650 0.72401 0.82198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.53 -30.12 8.88 25.60 0.23 -29.89 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.01 0.73 4.64 29.85 0.14 0.87 16 10 C 0.16 6.90 2.65 29.85 0.08 6.97 16 11 H 0.09 4.18 7.09 -2.39 -0.02 4.16 16 12 O -0.56 -22.68 12.73 -148.98 -1.90 -24.58 16 13 C -0.12 -4.58 5.04 -20.07 -0.10 -4.68 16 14 C -0.06 -2.03 9.30 22.20 0.21 -1.83 16 15 C -0.14 -3.91 6.40 -20.21 -0.13 -4.03 16 16 C -0.22 -4.30 11.14 23.54 0.26 -4.04 16 17 C 0.02 0.37 11.96 66.85 0.80 1.17 16 18 O -0.20 -4.71 10.58 -9.13 -0.10 -4.81 16 19 C 0.04 1.03 7.42 22.98 0.17 1.20 16 20 C -0.10 -2.88 9.84 22.37 0.22 -2.66 16 21 C -0.02 -0.67 6.31 22.35 0.14 -0.53 16 22 Cl -0.05 -1.88 27.10 -2.72 -0.07 -1.95 16 23 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 24 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.01 0.55 7.91 -2.39 -0.02 0.53 16 26 H 0.38 12.68 7.30 -74.06 -0.54 12.14 16 27 H 0.15 4.12 6.36 -2.91 -0.02 4.10 16 28 H 0.19 2.49 8.06 -2.91 -0.02 2.46 16 29 H 0.26 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -70.21 280.60 3.36 -66.85 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.64 Total: 10.52 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 2.48 Total: -36.72 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.28 Total: -56.29 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -1.99 Total: -29.39 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.07 Total: -1.95 kcal Total: -70.21 3.36 -66.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259385394.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.755 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds