Wall clock time and date at job start Mon Mar 30 2020 07:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42893 * 109.47549 * 2 1 4 4 C 1.35868 * 117.00138 * 180.02562 * 3 2 1 5 5 C 1.38023 * 119.87711 * 0.02562 * 4 3 2 6 6 C 1.38537 * 120.21171 * 180.02562 * 5 4 3 7 7 C 1.37882 * 120.22011 * 0.17458 * 6 5 4 8 8 F 1.35096 * 119.77870 * 179.71049 * 7 6 5 9 9 C 1.40018 * 120.44540 * 359.58972 * 7 6 5 10 10 S 1.75788 * 130.16742 * 180.13119 * 9 7 6 11 11 C 1.69983 * 93.22536 * 180.27660 * 10 9 7 12 12 C 1.36481 * 111.93069 * 0.02562 * 11 10 9 13 13 C 1.40820 * 123.30203 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00372 * 156.33900 * 13 12 11 15 15 C 1.39655 * 119.99635 * 336.34104 * 13 12 11 16 16 N 1.31106 * 120.00339 * 161.30574 * 15 13 12 17 17 Si 1.86806 * 120.00265 * 341.30195 * 15 13 12 18 18 H 1.48492 * 109.47041 * 94.05038 * 17 15 13 19 19 H 1.48501 * 109.47165 * 214.05208 * 17 15 13 20 20 H 1.48506 * 109.47027 * 334.05283 * 17 15 13 21 21 C 1.39270 * 119.64781 * 0.42685 * 9 7 6 22 22 H 1.09005 * 109.46667 * 60.00133 * 1 2 3 23 23 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46675 * 299.99876 * 1 2 3 25 25 H 1.09001 * 109.46818 * 239.99427 * 2 1 3 26 26 H 1.08998 * 109.46959 * 120.00154 * 2 1 3 27 27 H 1.07993 * 119.88941 * 0.02562 * 5 4 3 28 28 H 1.08001 * 119.89014 * 179.97438 * 6 5 4 29 29 H 1.08006 * 124.03311 * 180.02562 * 11 10 9 30 30 H 0.96994 * 120.00657 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3534 1.5251 -0.0005 5 6 4.1918 0.4287 -0.0016 6 6 5.5663 0.6021 -0.0016 7 6 6.1057 1.8710 0.0030 8 9 7.4473 2.0298 0.0089 9 6 5.2723 2.9962 -0.0008 10 16 5.6770 4.7069 0.0004 11 6 4.0474 5.1906 0.0016 12 6 3.1985 4.1220 0.0016 13 6 1.7960 4.2487 0.0020 14 1 1.1809 3.4441 -0.3733 15 6 1.2004 5.4148 0.4876 16 7 -0.0381 5.7010 0.1667 17 14 2.1683 6.5668 1.5947 18 1 2.7986 7.6303 0.7720 19 1 1.2527 7.1856 2.5866 20 1 3.2232 5.8003 2.3054 21 6 3.8896 2.8295 -0.0004 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.7749 -0.5675 -0.0024 28 1 6.2175 -0.2595 -0.0020 29 1 3.7226 6.2207 0.0022 30 1 -0.4520 6.5107 0.5043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396410799.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:13 Heat of formation + Delta-G solvation = -53.321489 kcal Electronic energy + Delta-G solvation = -17715.150093 eV Core-core repulsion = 14709.186508 eV Total energy + Delta-G solvation = -3005.963585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 266.052 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.29663 -39.66387 -37.16881 -34.93313 -32.70518 -31.48023 -29.40944 -28.16209 -25.92936 -23.77411 -22.51974 -21.38486 -19.86499 -18.21444 -17.06518 -16.58357 -16.18648 -15.75787 -15.08184 -15.03096 -14.83026 -14.17680 -13.78851 -13.13490 -12.98848 -12.87647 -12.46237 -12.23516 -12.03002 -11.88025 -11.51824 -11.28200 -10.95412 -10.86069 -10.55005 -10.36487 -9.98777 -9.76452 -9.60452 -9.18903 -8.18111 -7.70752 -6.95764 -6.76529 -4.42703 1.47031 1.66935 2.50200 2.98278 3.18754 3.27539 3.43963 3.47623 3.75381 4.04354 4.13373 4.80008 5.08407 5.12602 5.16814 5.27191 5.29897 5.45256 5.64808 5.79579 5.88868 6.03678 6.24934 6.30933 6.44796 6.53652 6.64908 6.95762 7.10429 7.34672 7.60216 7.93604 8.36645 8.43890 8.79818 10.05029 Molecular weight = 266.05amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.010975 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.539224 B = 2550.755616 C = 4336.988112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.285 6.285 4 C 0.175 3.825 5 C -0.224 4.224 6 C -0.107 4.107 7 C 0.069 3.931 8 F -0.147 7.147 9 C -0.137 4.137 10 S 0.096 5.904 11 C -0.468 4.468 12 C 0.096 3.904 13 C -0.401 4.401 14 H 0.105 0.895 15 C 0.086 3.914 16 N -0.804 5.804 17 Si 0.914 3.086 18 H -0.273 1.273 19 H -0.295 1.295 20 H -0.241 1.241 21 C -0.068 4.068 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -9.123 0.767 9.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.197 6.197 4 C 0.127 3.873 5 C -0.247 4.247 6 C -0.128 4.128 7 C 0.044 3.956 8 F -0.126 7.126 9 C -0.253 4.253 10 S 0.360 5.640 11 C -0.603 4.603 12 C 0.087 3.913 13 C -0.432 4.432 14 H 0.123 0.877 15 C -0.134 4.134 16 N -0.428 5.428 17 Si 0.742 3.258 18 H -0.200 1.200 19 H -0.223 1.223 20 H -0.164 1.164 21 C -0.079 4.079 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.158 0.842 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.638 -7.890 0.760 9.184 hybrid contribution -0.848 -0.298 0.449 1.005 sum 3.790 -8.189 1.210 9.104 Atomic orbital electron populations 1.21738 0.92952 1.01973 1.04102 1.22766 0.95991 0.83051 1.00712 1.86354 1.18462 1.27551 1.87359 1.18805 0.82459 0.91958 0.94066 1.20595 0.93037 0.97590 1.13466 1.20442 0.95164 0.94639 1.02592 1.16752 0.76099 0.92304 1.10482 1.91417 1.29992 1.96487 1.94655 1.22546 0.95956 0.98528 1.08309 1.81820 1.09007 0.93132 1.80041 1.23637 0.94723 1.01486 1.40449 1.17326 0.94161 0.86675 0.93160 1.19115 0.89555 1.01607 1.32942 0.87716 1.26131 0.94901 0.97136 0.95221 1.69797 1.13570 1.24055 1.35349 0.86192 0.79660 0.79774 0.80188 1.19981 1.22313 1.16418 1.18677 0.90729 0.92468 1.06057 0.91345 0.91042 0.91338 0.92479 0.92469 0.85075 0.85049 0.84247 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 37.16 0.38 -1.52 16 2 C 0.05 0.71 5.45 37.16 0.20 0.92 16 3 O -0.28 -5.68 8.07 -19.32 -0.16 -5.83 16 4 C 0.18 3.59 6.74 -38.60 -0.26 3.33 16 5 C -0.22 -3.73 9.01 -39.55 -0.36 -4.09 16 6 C -0.11 -1.77 10.00 -39.60 -0.40 -2.16 16 7 C 0.07 1.34 7.32 -39.04 -0.29 1.06 16 8 F -0.15 -2.74 17.26 2.25 0.04 -2.70 16 9 C -0.14 -3.02 6.42 -38.53 -0.25 -3.27 16 10 S 0.10 2.11 22.96 -107.50 -2.47 -0.36 16 11 C -0.47 -11.75 8.06 30.10 0.24 -11.51 16 12 C 0.10 2.48 5.32 -106.20 -0.56 1.92 16 13 C -0.40 -10.91 9.20 -38.08 -0.35 -11.26 16 14 H 0.11 2.96 6.58 -52.49 -0.35 2.61 16 15 C 0.09 2.27 5.46 -17.33 -0.09 2.18 16 16 N -0.80 -21.38 13.94 55.53 0.77 -20.61 16 17 Si 0.91 21.53 24.56 -169.99 -4.17 17.35 16 18 H -0.27 -6.33 6.67 56.52 0.38 -5.96 16 19 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.24 -5.85 6.75 56.52 0.38 -5.47 16 21 C -0.07 -1.60 6.03 -105.10 -0.63 -2.23 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16 26 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 27 H 0.13 1.72 6.24 -52.49 -0.33 1.39 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.14 3.54 4.42 -52.48 -0.23 3.30 16 30 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 LS Contribution 269.93 15.07 4.07 4.07 Total: -1.00 -28.54 269.93 -6.85 -35.39 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.57 Total: -0.64 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -2.36 Total: -26.66 kcal Atomic # 7 Polarization: -21.38 SS G_CDS: 0.77 Total: -20.61 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.16 Total: -5.83 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.70 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.17 Total: 17.35 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.47 Total: -0.36 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.54 -6.85 -35.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396410799.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.931 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds