Wall clock time and date at job start Mon Mar 30 2020 07:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42893 * 109.47549 * 2 1 4 4 C 1.35868 * 117.00138 * 180.02562 * 3 2 1 5 5 C 1.38023 * 119.87711 * 0.02562 * 4 3 2 6 6 C 1.38537 * 120.21171 * 180.02562 * 5 4 3 7 7 C 1.37882 * 120.22011 * 0.17458 * 6 5 4 8 8 F 1.35096 * 119.77870 * 179.71049 * 7 6 5 9 9 C 1.40018 * 120.44540 * 359.58972 * 7 6 5 10 10 S 1.75788 * 130.16742 * 180.13119 * 9 7 6 11 11 C 1.69983 * 93.22536 * 180.27660 * 10 9 7 12 12 C 1.36481 * 111.93069 * 0.02562 * 11 10 9 13 13 C 1.40820 * 123.30203 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00372 * 156.33900 * 13 12 11 15 15 C 1.39655 * 119.99635 * 336.34104 * 13 12 11 16 16 N 1.31106 * 120.00339 * 161.30574 * 15 13 12 17 17 Si 1.86806 * 120.00265 * 341.30195 * 15 13 12 18 18 H 1.48492 * 109.47041 * 94.05038 * 17 15 13 19 19 H 1.48501 * 109.47165 * 214.05208 * 17 15 13 20 20 H 1.48506 * 109.47027 * 334.05283 * 17 15 13 21 21 C 1.39270 * 119.64781 * 0.42685 * 9 7 6 22 22 H 1.09005 * 109.46667 * 60.00133 * 1 2 3 23 23 H 1.08998 * 109.46947 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46675 * 299.99876 * 1 2 3 25 25 H 1.09001 * 109.46818 * 239.99427 * 2 1 3 26 26 H 1.08998 * 109.46959 * 120.00154 * 2 1 3 27 27 H 1.07993 * 119.88941 * 0.02562 * 5 4 3 28 28 H 1.08001 * 119.89014 * 179.97438 * 6 5 4 29 29 H 1.08006 * 124.03311 * 180.02562 * 11 10 9 30 30 H 0.96994 * 120.00657 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3534 1.5251 -0.0005 5 6 4.1918 0.4287 -0.0016 6 6 5.5663 0.6021 -0.0016 7 6 6.1057 1.8710 0.0030 8 9 7.4473 2.0298 0.0089 9 6 5.2723 2.9962 -0.0008 10 16 5.6770 4.7069 0.0004 11 6 4.0474 5.1906 0.0016 12 6 3.1985 4.1220 0.0016 13 6 1.7960 4.2487 0.0020 14 1 1.1809 3.4441 -0.3733 15 6 1.2004 5.4148 0.4876 16 7 -0.0381 5.7010 0.1667 17 14 2.1683 6.5668 1.5947 18 1 2.7986 7.6303 0.7720 19 1 1.2527 7.1856 2.5866 20 1 3.2232 5.8003 2.3054 21 6 3.8896 2.8295 -0.0004 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.7749 -0.5675 -0.0024 28 1 6.2175 -0.2595 -0.0020 29 1 3.7226 6.2207 0.0022 30 1 -0.4520 6.5107 0.5043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396410799.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:12 Heat of formation + Delta-G solvation = -70.023065 kcal Electronic energy + Delta-G solvation = -17715.874327 eV Core-core repulsion = 14709.186508 eV Total energy + Delta-G solvation = -3006.687820 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 266.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.75923 -41.13850 -38.69105 -36.69199 -34.57630 -32.62007 -31.06344 -29.65621 -27.83117 -25.15230 -24.05056 -22.78370 -21.63590 -19.72850 -18.79212 -18.29219 -17.69364 -17.04255 -16.89084 -16.47405 -16.41826 -15.71188 -15.31643 -14.91531 -14.54680 -14.43659 -13.83499 -13.64072 -13.45572 -13.33051 -13.14387 -12.82157 -12.66210 -12.60503 -12.01969 -11.75173 -11.60297 -11.47429 -11.44459 -11.06545 -9.86520 -9.38340 -8.95199 -8.43217 -6.42929 -0.11815 0.15803 0.84212 1.09723 1.25369 1.40471 1.58445 1.68328 2.11254 2.39798 2.51600 3.15228 3.32709 3.72537 3.90433 4.13040 4.16087 4.30597 4.34073 4.43319 4.60719 4.85318 4.86336 4.98516 5.00734 5.09661 5.17572 5.30973 5.46365 5.64912 5.71690 6.30827 6.45023 6.59521 6.78250 8.10996 Molecular weight = 266.05amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.010975 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.539224 B = 2550.755616 C = 4336.988112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.038 3.962 3 O -0.320 6.320 4 C 0.163 3.837 5 C -0.201 4.201 6 C -0.079 4.079 7 C 0.055 3.945 8 F -0.143 7.143 9 C -0.149 4.149 10 S 0.110 5.890 11 C -0.483 4.483 12 C 0.082 3.918 13 C -0.429 4.429 14 H 0.080 0.920 15 C 0.054 3.946 16 N -0.836 5.836 17 Si 0.962 3.038 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.256 1.256 21 C -0.113 4.113 22 H 0.049 0.951 23 H 0.112 0.888 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.179 0.821 28 H 0.182 0.818 29 H 0.131 0.869 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -11.962 1.170 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.036 4.036 3 O -0.233 6.233 4 C 0.115 3.885 5 C -0.223 4.223 6 C -0.100 4.100 7 C 0.030 3.970 8 F -0.122 7.122 9 C -0.266 4.266 10 S 0.373 5.627 11 C -0.617 4.617 12 C 0.073 3.927 13 C -0.461 4.461 14 H 0.098 0.902 15 C -0.162 4.162 16 N -0.462 5.462 17 Si 0.787 3.213 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.180 1.180 21 C -0.124 4.124 22 H 0.068 0.932 23 H 0.130 0.870 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.196 0.804 28 H 0.199 0.801 29 H 0.148 0.852 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.132 -10.745 1.160 12.426 hybrid contribution -1.264 0.338 0.272 1.336 sum 4.868 -10.407 1.432 11.578 Atomic orbital electron populations 1.21790 0.92462 1.03996 1.02327 1.23200 0.96531 0.80910 1.02959 1.86336 1.18454 1.31248 1.87244 1.19051 0.83427 0.91908 0.94157 1.21117 0.92696 0.98371 1.10117 1.21036 0.95649 0.94822 0.98486 1.16968 0.76139 0.92583 1.11350 1.91428 1.29527 1.96528 1.94707 1.22757 0.96072 0.98943 1.08800 1.81510 1.06411 0.93941 1.80834 1.23794 0.96871 1.01107 1.39937 1.17595 0.93878 0.88596 0.92631 1.19090 0.90311 1.01631 1.35051 0.90167 1.26677 0.95592 0.98047 0.95906 1.69807 1.14493 1.25191 1.36691 0.85478 0.78486 0.78289 0.79016 1.19621 1.20399 1.17968 1.18816 0.91367 0.93099 1.09101 0.93155 0.87000 0.93130 0.90013 0.89988 0.80428 0.80083 0.85184 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 10.28 71.98 0.74 -2.83 16 2 C 0.04 0.98 5.45 71.98 0.39 1.37 16 3 O -0.32 -12.62 8.07 -92.06 -0.74 -13.36 16 4 C 0.16 6.44 6.74 22.90 0.15 6.59 16 5 C -0.20 -5.75 9.01 22.29 0.20 -5.55 16 6 C -0.08 -2.20 10.00 22.26 0.22 -1.97 16 7 C 0.06 1.98 7.32 22.62 0.17 2.15 16 8 F -0.14 -4.92 17.26 44.97 0.78 -4.14 16 9 C -0.15 -6.48 6.42 22.95 0.15 -6.33 16 10 S 0.11 4.85 22.96 -56.49 -1.30 3.56 16 11 C -0.48 -24.88 8.06 67.41 0.54 -24.34 16 12 C 0.08 4.42 5.32 -20.88 -0.11 4.31 16 13 C -0.43 -24.53 9.20 23.24 0.21 -24.32 16 14 H 0.08 4.84 6.58 -2.91 -0.02 4.82 16 15 C 0.05 2.98 5.46 85.14 0.46 3.44 16 16 N -0.84 -46.15 13.94 21.79 0.30 -45.85 16 17 Si 0.96 45.59 24.56 68.60 1.68 47.28 16 18 H -0.27 -12.49 6.67 99.48 0.66 -11.83 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.26 -12.59 6.75 99.48 0.67 -11.92 16 21 C -0.11 -5.37 6.03 -20.17 -0.12 -5.49 16 22 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 1.68 7.64 -2.39 -0.02 1.66 16 26 H 0.08 1.69 7.65 -2.39 -0.02 1.67 16 27 H 0.18 3.43 6.24 -2.91 -0.02 3.41 16 28 H 0.18 3.32 8.06 -2.91 -0.02 3.29 16 29 H 0.13 6.80 4.42 -2.91 -0.01 6.78 16 30 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 Total: -1.00 -65.59 269.93 4.84 -60.75 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: 1.10 Total: 4.76 kcal Atomic # 6 Polarization: -56.00 SS G_CDS: 3.01 Total: -52.98 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.30 Total: -45.85 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.74 Total: -13.36 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.78 Total: -4.14 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.68 Total: 47.28 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.30 Total: 3.56 kcal Total: -65.59 4.84 -60.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396410799.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.275 kcal (2) G-P(sol) polarization free energy of solvation -65.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds