Wall clock time and date at job start Mon Mar 30 2020 07:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 O 1.42894 * 109.47291 * 180.02562 * 3 2 1 5 5 C 1.35712 * 117.00145 * 179.97438 * 4 3 2 6 6 C 1.39216 * 119.84840 * 359.97438 * 5 4 3 7 7 C 1.37558 * 120.26957 * 180.02562 * 6 5 4 8 8 C 1.39877 * 119.97325 * 359.97438 * 7 6 5 9 9 C 1.47155 * 120.14878 * 179.97438 * 8 7 6 10 10 O 1.21542 * 119.99775 * 180.02562 * 9 8 7 11 11 O 1.34788 * 119.99861 * 0.02912 * 9 8 7 12 12 C 1.40484 * 119.70509 * 0.02562 * 8 7 6 13 13 O 1.35517 * 120.13169 * 179.71840 * 12 8 7 14 14 C 1.34826 * 116.99443 * 174.67467 * 13 12 8 15 15 H 1.07997 * 120.00115 * 5.06987 * 14 13 12 16 16 C 1.38698 * 119.99450 * 185.06572 * 14 13 12 17 17 N 1.31523 * 119.99784 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00178 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47119 * 90.00338 * 18 16 14 20 20 H 1.48502 * 109.47039 * 209.99875 * 18 16 14 21 21 H 1.48499 * 109.47287 * 329.99877 * 18 16 14 22 22 C 1.38561 * 119.73066 * 359.97438 * 12 8 7 23 23 H 1.09000 * 109.47011 * 299.99618 * 1 2 3 24 24 H 1.08993 * 109.47128 * 60.00494 * 1 2 3 25 25 H 1.08998 * 109.46851 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47360 * 239.99699 * 2 1 3 27 27 H 1.09007 * 109.47173 * 119.99628 * 2 1 3 28 28 H 1.08998 * 109.47250 * 59.99632 * 3 2 1 29 29 H 1.08999 * 109.46954 * 300.00136 * 3 2 1 30 30 H 1.07997 * 119.86809 * 0.02562 * 6 5 4 31 31 H 1.08000 * 120.01399 * 179.97438 * 7 6 5 32 32 H 0.96697 * 117.00253 * 179.97438 * 11 9 8 33 33 H 0.96992 * 119.99931 * 179.97438 * 17 16 14 34 34 H 1.08005 * 119.99104 * 179.97438 * 22 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0851 2.6518 -0.0012 6 6 3.3238 3.8173 -0.0018 7 6 3.9393 5.0475 -0.0030 8 6 5.3356 5.1304 -0.0030 9 6 5.9980 6.4444 -0.0048 10 8 7.2115 6.5132 -0.0054 11 8 5.2590 7.5716 -0.0058 12 6 6.1027 3.9535 -0.0025 13 8 7.4561 4.0237 -0.0083 14 6 8.1296 2.8611 0.1041 15 1 7.5924 1.9243 0.1109 16 6 9.5125 2.8685 0.2109 17 7 10.1697 1.7345 0.3201 18 14 10.4415 4.4890 0.1997 19 1 10.5797 4.9900 1.5908 20 1 11.7895 4.2827 -0.3883 21 1 9.6941 5.4826 -0.6123 22 6 5.4700 2.7208 -0.0013 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 2.2456 3.7555 -0.0013 31 1 3.3446 5.9491 -0.0038 32 1 5.7388 8.4112 -0.0066 33 1 11.1367 1.7396 0.3944 34 1 6.0557 1.8133 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035414283.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:00 Heat of formation + Delta-G solvation = -138.311345 kcal Electronic energy + Delta-G solvation = -19814.359397 eV Core-core repulsion = 16485.417809 eV Total energy + Delta-G solvation = -3328.941588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13005 -39.17268 -38.32138 -36.01486 -35.31186 -33.92021 -32.51383 -30.16693 -29.32276 -26.62479 -25.47911 -23.48708 -22.30340 -21.39338 -20.33106 -18.31788 -17.98760 -17.39951 -16.51261 -16.20501 -15.77627 -15.40695 -15.00308 -14.29519 -14.16255 -13.90711 -13.74487 -13.63912 -13.09462 -12.75818 -12.37791 -12.26424 -12.07260 -11.95900 -11.73145 -11.32419 -11.17673 -10.92574 -10.81631 -10.58959 -10.32957 -10.15610 -9.89346 -9.48185 -8.96042 -7.95172 -7.62409 -6.54361 -4.20514 1.47087 2.08184 3.24024 3.27134 3.33584 3.37763 3.59409 3.70839 4.28343 4.36639 4.62056 4.78685 4.80600 5.01377 5.11130 5.22734 5.30270 5.32864 5.52267 5.52891 5.77630 5.82569 5.93555 5.95996 6.06103 6.16269 6.41498 6.65619 6.77459 6.90389 7.07180 7.18952 7.63814 7.76609 7.88729 8.63005 8.79576 9.38788 10.50091 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.005950 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.775704 B = 4705.005688 C = 6204.084430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.059 3.941 4 O -0.314 6.314 5 C 0.200 3.800 6 C -0.304 4.304 7 C 0.020 3.980 8 C -0.245 4.245 9 C 0.522 3.478 10 O -0.506 6.506 11 O -0.529 6.529 12 C 0.232 3.768 13 O -0.159 6.159 14 C -0.397 4.397 15 H 0.113 0.887 16 C 0.074 3.926 17 N -0.862 5.862 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.239 1.239 22 C -0.265 4.265 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.402 0.598 33 H 0.284 0.716 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.173 2.491 -0.564 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.016 4.016 4 O -0.227 6.227 5 C 0.154 3.846 6 C -0.323 4.323 7 C 0.002 3.998 8 C -0.248 4.248 9 C 0.368 3.632 10 O -0.395 6.395 11 O -0.341 6.341 12 C 0.173 3.827 13 O -0.058 6.058 14 C -0.471 4.471 15 H 0.130 0.870 16 C -0.133 4.133 17 N -0.497 5.497 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.162 1.162 22 C -0.285 4.285 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.149 0.851 32 H 0.258 0.742 33 H 0.094 0.906 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.537 1.983 -0.565 15.674 hybrid contribution 0.606 1.067 0.053 1.229 sum -14.931 3.050 -0.513 15.248 Atomic orbital electron populations 1.21681 0.94505 1.02282 1.02101 1.21497 0.95764 0.95249 1.03795 1.22824 0.79038 0.98329 1.01423 1.86013 1.20853 1.27869 1.87980 1.18907 0.91571 0.83428 0.90686 1.20698 0.99154 0.92009 1.20479 1.20731 0.92009 0.97093 0.89993 1.17910 0.92715 0.87790 1.26343 1.20670 0.85225 0.84125 0.73186 1.90964 1.14786 1.87339 1.46371 1.84563 1.44954 1.17207 1.87337 1.18519 0.83692 0.90893 0.89572 1.83776 1.12928 1.34319 1.74808 1.21004 0.90668 0.83821 1.51639 0.86980 1.24526 0.95516 0.98884 0.94388 1.69636 1.09409 1.25996 1.44630 0.86206 0.78213 0.83008 0.80118 1.19764 1.20981 1.16237 1.20288 0.91436 0.98821 1.17946 0.92439 0.92440 0.91921 0.90827 0.90815 0.92064 0.92081 0.86071 0.85102 0.74167 0.90624 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.13 -1.24 6.30 -26.73 -0.17 -1.41 16 3 C 0.06 0.71 4.73 37.16 0.18 0.88 16 4 O -0.31 -5.28 10.12 -18.84 -0.19 -5.47 16 5 C 0.20 3.74 6.69 -39.06 -0.26 3.48 16 6 C -0.30 -4.94 9.01 -39.47 -0.36 -5.30 16 7 C 0.02 0.34 9.60 -39.22 -0.38 -0.03 16 8 C -0.24 -5.09 5.89 -104.82 -0.62 -5.71 16 9 C 0.52 10.65 8.26 34.35 0.28 10.93 16 10 O -0.51 -12.31 15.94 -26.63 -0.42 -12.74 16 11 O -0.53 -8.00 12.67 -40.73 -0.52 -8.52 16 12 C 0.23 5.53 6.66 -38.62 -0.26 5.27 16 13 O -0.16 -4.34 6.65 -21.14 -0.14 -4.49 16 14 C -0.40 -11.28 9.95 30.90 0.31 -10.97 16 15 H 0.11 3.21 5.44 -52.49 -0.29 2.92 16 16 C 0.07 2.09 5.49 -17.51 -0.10 1.99 16 17 N -0.86 -24.76 13.96 55.48 0.77 -23.98 16 18 Si 0.90 22.73 28.62 -169.99 -4.86 17.87 16 19 H -0.27 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.24 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.27 -5.85 9.09 -39.30 -0.36 -6.21 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 28 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 29 H 0.06 0.66 7.65 -51.93 -0.40 0.27 16 30 H 0.12 1.57 6.26 -52.49 -0.33 1.24 16 31 H 0.13 1.83 7.60 -52.49 -0.40 1.43 16 32 H 0.40 4.19 9.11 45.56 0.42 4.60 16 33 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.15 3.45 5.63 -52.48 -0.30 3.16 16 LS Contribution 299.22 15.07 4.51 4.51 Total: -1.00 -32.63 299.22 -5.14 -37.78 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.94 Total: 2.85 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.35 Total: -7.80 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.77 Total: -23.98 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.27 Total: -31.22 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.86 Total: 17.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.63 -5.14 -37.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035414283.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.536 kcal (2) G-P(sol) polarization free energy of solvation -32.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds