Wall clock time and date at job start Mon Mar 30 2020 07:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47119 * 2 1 4 4 O 1.42894 * 109.47291 * 180.02562 * 3 2 1 5 5 C 1.35712 * 117.00145 * 179.97438 * 4 3 2 6 6 C 1.39216 * 119.84840 * 359.97438 * 5 4 3 7 7 C 1.37558 * 120.26957 * 180.02562 * 6 5 4 8 8 C 1.39877 * 119.97325 * 359.97438 * 7 6 5 9 9 C 1.47155 * 120.14878 * 179.97438 * 8 7 6 10 10 O 1.21542 * 119.99775 * 180.02562 * 9 8 7 11 11 O 1.34788 * 119.99861 * 0.02912 * 9 8 7 12 12 C 1.40484 * 119.70509 * 0.02562 * 8 7 6 13 13 O 1.35517 * 120.13169 * 179.71840 * 12 8 7 14 14 C 1.34826 * 116.99443 * 174.67467 * 13 12 8 15 15 H 1.07997 * 120.00115 * 5.06987 * 14 13 12 16 16 C 1.38698 * 119.99450 * 185.06572 * 14 13 12 17 17 N 1.31523 * 119.99784 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00178 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47119 * 90.00338 * 18 16 14 20 20 H 1.48502 * 109.47039 * 209.99875 * 18 16 14 21 21 H 1.48499 * 109.47287 * 329.99877 * 18 16 14 22 22 C 1.38561 * 119.73066 * 359.97438 * 12 8 7 23 23 H 1.09000 * 109.47011 * 299.99618 * 1 2 3 24 24 H 1.08993 * 109.47128 * 60.00494 * 1 2 3 25 25 H 1.08998 * 109.46851 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47360 * 239.99699 * 2 1 3 27 27 H 1.09007 * 109.47173 * 119.99628 * 2 1 3 28 28 H 1.08998 * 109.47250 * 59.99632 * 3 2 1 29 29 H 1.08999 * 109.46954 * 300.00136 * 3 2 1 30 30 H 1.07997 * 119.86809 * 0.02562 * 6 5 4 31 31 H 1.08000 * 120.01399 * 179.97438 * 7 6 5 32 32 H 0.96697 * 117.00253 * 179.97438 * 11 9 8 33 33 H 0.96992 * 119.99931 * 179.97438 * 17 16 14 34 34 H 1.08005 * 119.99104 * 179.97438 * 22 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0851 2.6518 -0.0012 6 6 3.3238 3.8173 -0.0018 7 6 3.9393 5.0475 -0.0030 8 6 5.3356 5.1304 -0.0030 9 6 5.9980 6.4444 -0.0048 10 8 7.2115 6.5132 -0.0054 11 8 5.2590 7.5716 -0.0058 12 6 6.1027 3.9535 -0.0025 13 8 7.4561 4.0237 -0.0083 14 6 8.1296 2.8611 0.1041 15 1 7.5924 1.9243 0.1109 16 6 9.5125 2.8685 0.2109 17 7 10.1697 1.7345 0.3201 18 14 10.4415 4.4890 0.1997 19 1 10.5797 4.9900 1.5908 20 1 11.7895 4.2827 -0.3883 21 1 9.6941 5.4826 -0.6123 22 6 5.4700 2.7208 -0.0013 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 2.2456 3.7555 -0.0013 31 1 3.3446 5.9491 -0.0038 32 1 5.7388 8.4112 -0.0066 33 1 11.1367 1.7396 0.3944 34 1 6.0557 1.8133 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035414283.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:59 Heat of formation + Delta-G solvation = -160.804275 kcal Electronic energy + Delta-G solvation = -19815.334764 eV Core-core repulsion = 16485.417809 eV Total energy + Delta-G solvation = -3329.916954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.71584 -40.61955 -39.98280 -37.54237 -36.80503 -34.82849 -34.53226 -31.69007 -30.93742 -27.69136 -27.32086 -24.97317 -23.68028 -22.64642 -21.71575 -20.00643 -19.76760 -18.90815 -18.01499 -17.43762 -17.26463 -16.93867 -16.57637 -15.92182 -15.65542 -15.53607 -15.33972 -14.92976 -14.52065 -14.23992 -14.00793 -13.59751 -13.46462 -13.17839 -12.91632 -12.76513 -12.44138 -12.38486 -12.12979 -12.03490 -11.90380 -11.59480 -11.47625 -11.29674 -10.98914 -9.57301 -9.23764 -8.61662 -6.34079 -0.10313 0.49994 1.25954 1.30963 1.57056 1.69173 2.10356 2.26173 2.30832 2.66490 2.87587 3.01984 3.79907 3.99175 3.99438 4.09482 4.31085 4.33350 4.39881 4.44505 4.60465 4.68093 4.83420 4.85754 5.14804 5.18552 5.20945 5.21779 5.30059 5.39499 5.58820 5.64196 5.74766 5.91356 6.43642 6.72387 7.20194 7.43920 8.48324 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.005950 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.775704 B = 4705.005688 C = 6204.084430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.046 3.954 4 O -0.331 6.331 5 C 0.211 3.789 6 C -0.275 4.275 7 C 0.037 3.963 8 C -0.258 4.258 9 C 0.529 3.471 10 O -0.552 6.552 11 O -0.503 6.503 12 C 0.209 3.791 13 O -0.197 6.197 14 C -0.409 4.409 15 H 0.091 0.909 16 C 0.029 3.971 17 N -0.905 5.905 18 Si 0.958 3.042 19 H -0.272 1.272 20 H -0.263 1.263 21 H -0.262 1.262 22 C -0.294 4.294 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.172 0.828 31 H 0.178 0.822 32 H 0.426 0.574 33 H 0.289 0.711 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.338 4.405 -0.605 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.028 4.028 4 O -0.244 6.244 5 C 0.163 3.837 6 C -0.293 4.293 7 C 0.019 3.981 8 C -0.261 4.261 9 C 0.376 3.624 10 O -0.444 6.444 11 O -0.316 6.316 12 C 0.154 3.846 13 O -0.100 6.100 14 C -0.485 4.485 15 H 0.108 0.892 16 C -0.173 4.173 17 N -0.544 5.544 18 Si 0.781 3.219 19 H -0.197 1.197 20 H -0.187 1.187 21 H -0.186 1.186 22 C -0.314 4.314 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.190 0.810 31 H 0.195 0.805 32 H 0.287 0.713 33 H 0.099 0.901 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.777 3.919 -0.608 20.171 hybrid contribution 1.316 0.519 0.055 1.415 sum -18.461 4.437 -0.553 18.995 Atomic orbital electron populations 1.21660 0.92092 1.03227 1.03011 1.21545 0.97659 0.93947 1.03157 1.23314 0.76022 1.00204 1.03264 1.86033 1.24036 1.27176 1.87186 1.18969 0.90497 0.85288 0.88901 1.21251 1.01401 0.90351 1.16323 1.21243 0.90225 0.99184 0.87415 1.18316 0.94381 0.87238 1.26126 1.20618 0.84582 0.85199 0.71968 1.90964 1.16941 1.88147 1.48398 1.84469 1.43843 1.17176 1.86143 1.19164 0.83156 0.92810 0.89463 1.83760 1.14510 1.33122 1.78623 1.20900 0.91118 0.83975 1.52497 0.89191 1.25127 0.96123 1.01310 0.94702 1.69686 1.09853 1.27148 1.47709 0.85387 0.77690 0.79279 0.79572 1.19712 1.18729 1.18618 1.20224 0.93419 0.97484 1.20230 0.91513 0.91481 0.91101 0.91552 0.91595 0.90070 0.90030 0.81030 0.80517 0.71286 0.90148 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.13 -2.15 6.30 30.60 0.19 -1.95 16 3 C 0.05 0.92 4.73 71.98 0.34 1.26 16 4 O -0.33 -10.53 10.12 -90.33 -0.91 -11.45 16 5 C 0.21 7.47 6.69 22.61 0.15 7.62 16 6 C -0.27 -7.51 9.01 22.34 0.20 -7.31 16 7 C 0.04 1.08 9.60 22.51 0.22 1.29 16 8 C -0.26 -10.31 5.89 -19.99 -0.12 -10.43 16 9 C 0.53 20.70 8.26 70.16 0.58 21.28 16 10 O -0.55 -27.03 15.94 26.71 0.43 -26.61 16 11 O -0.50 -13.17 12.67 -57.00 -0.72 -13.89 16 12 C 0.21 10.22 6.66 22.89 0.15 10.37 16 13 O -0.20 -11.38 6.65 0.81 0.01 -11.38 16 14 C -0.41 -25.02 9.95 67.93 0.68 -24.34 16 15 H 0.09 5.68 5.44 -2.91 -0.02 5.66 16 16 C 0.03 1.73 5.49 84.85 0.47 2.20 16 17 N -0.91 -55.00 13.96 21.62 0.30 -54.70 16 18 Si 0.96 49.38 28.62 68.60 1.96 51.34 16 19 H -0.27 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -14.33 7.11 99.48 0.71 -13.62 16 22 C -0.29 -13.41 9.09 22.45 0.20 -13.21 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.08 1.34 7.65 -2.39 -0.02 1.32 16 29 H 0.08 1.34 7.65 -2.39 -0.02 1.32 16 30 H 0.17 3.08 6.26 -2.91 -0.02 3.06 16 31 H 0.18 3.61 7.60 -2.91 -0.02 3.59 16 32 H 0.43 7.18 9.11 -74.06 -0.67 6.51 16 33 H 0.29 16.03 8.31 -92.71 -0.77 15.26 16 34 H 0.12 6.07 5.63 -2.91 -0.02 6.06 16 Total: -1.00 -77.28 299.22 5.30 -71.98 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.47 Total: 8.78 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 3.78 Total: -14.08 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.30 Total: -54.70 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: -1.21 Total: -63.32 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.96 Total: 51.34 kcal Total: -77.28 5.30 -71.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035414283.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.826 kcal (2) G-P(sol) polarization free energy of solvation -77.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds