Wall clock time and date at job start Mon Mar 30 2020 07:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35701 * 117.00213 * 2 1 4 4 C 1.39196 * 119.85541 * 359.97438 * 3 2 1 5 5 C 1.36519 * 120.37401 * 180.02562 * 4 3 2 6 6 C 1.39903 * 120.08707 * 0.02562 * 5 4 3 7 7 C 1.47150 * 120.14442 * 179.97438 * 6 5 4 8 8 O 1.21541 * 120.00159 * 180.02562 * 7 6 5 9 9 O 1.34792 * 119.99924 * 0.02562 * 7 6 5 10 10 C 1.40385 * 119.71678 * 359.97438 * 6 5 4 11 11 O 1.35644 * 120.18574 * 180.02562 * 10 6 5 12 12 C 1.42903 * 116.99549 * 180.02562 * 11 10 6 13 13 C 1.53000 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46735 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99928 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99611 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99711 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00219 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46794 * 90.00022 * 18 16 14 20 20 H 1.48502 * 109.47140 * 210.00005 * 18 16 14 21 21 H 1.48501 * 109.46982 * 330.00118 * 18 16 14 22 22 C 1.38474 * 119.62602 * 0.27218 * 10 6 5 23 23 H 1.09000 * 109.47141 * 300.00144 * 1 2 3 24 24 H 1.09002 * 109.47093 * 59.99855 * 1 2 3 25 25 H 1.09003 * 109.47364 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.81008 * 0.02821 * 4 3 2 27 27 H 1.08004 * 119.95827 * 179.97438 * 5 4 3 28 28 H 0.96695 * 116.99968 * 179.97438 * 9 7 6 29 29 H 1.09002 * 109.47382 * 59.99849 * 12 11 10 30 30 H 1.09001 * 109.46938 * 299.99835 * 12 11 10 31 31 H 1.09001 * 109.47194 * 299.99575 * 13 12 11 32 32 H 1.08992 * 109.47399 * 59.99748 * 13 12 11 33 33 H 0.97000 * 119.99684 * 179.97438 * 17 16 14 34 34 H 1.07990 * 120.04516 * 179.72489 * 22 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2841 2.3746 -0.0005 5 6 1.8929 3.5965 -0.0011 6 6 3.2892 3.6845 -0.0016 7 6 3.9467 5.0009 -0.0028 8 8 5.1599 5.0743 -0.0037 9 8 3.2035 6.1254 -0.0028 10 6 4.0603 2.5114 -0.0011 11 8 5.4147 2.5856 -0.0011 12 6 6.1321 1.3496 -0.0011 13 6 7.6356 1.6327 -0.0004 14 6 8.3921 0.3293 -0.0011 15 1 7.8543 -0.6072 -0.0014 16 6 9.7709 0.3325 -0.0012 17 7 10.4311 -0.8049 -0.0012 18 14 10.7012 1.9524 -0.0013 19 1 10.9478 2.3816 1.3988 20 1 11.9991 1.7778 -0.7014 21 1 9.8962 2.9855 -0.7012 22 6 3.4305 1.2782 -0.0057 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2059 2.3118 -0.0005 27 1 1.2959 4.4966 -0.0019 28 1 3.6802 6.9667 -0.0032 29 1 5.8700 0.7774 -0.8910 30 1 5.8700 0.7775 0.8889 31 1 7.8980 2.2050 -0.8902 32 1 7.8973 2.2047 0.8897 33 1 11.4011 -0.8027 -0.0017 34 1 4.0171 0.3715 -0.0098 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042313320.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:39 Heat of formation + Delta-G solvation = -143.770676 kcal Electronic energy + Delta-G solvation = -19630.783167 eV Core-core repulsion = 16301.604845 eV Total energy + Delta-G solvation = -3329.178322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78717 -39.63103 -38.80637 -36.54164 -35.78771 -33.31196 -31.14582 -31.00959 -29.59693 -27.63562 -25.37515 -24.10302 -22.51258 -21.16046 -20.44109 -18.81067 -17.95765 -17.03306 -17.00505 -16.28841 -16.12128 -15.92368 -15.62259 -15.12456 -14.60521 -14.47531 -14.07001 -13.58666 -12.96915 -12.93872 -12.64127 -12.49961 -12.21570 -12.07591 -11.44547 -11.35371 -11.12493 -11.01814 -10.75044 -10.29209 -10.19561 -9.99186 -9.78932 -9.31385 -8.67626 -8.58872 -8.18502 -6.10595 -4.11459 0.78512 1.35677 2.69513 2.93746 3.18435 3.33373 3.40051 3.48849 3.54694 3.73738 4.43596 4.54746 4.78941 4.85865 4.88328 5.15541 5.18644 5.20832 5.24068 5.31946 5.61057 5.86886 5.88746 5.96983 6.08732 6.22798 6.34556 6.49289 6.62904 7.04836 7.14644 7.27456 7.62332 7.76282 8.13240 8.41156 8.89813 9.50072 11.01772 Molecular weight = 266.10amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.005215 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.197317 B = 5367.520311 C = 6856.968551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.203 3.797 4 C -0.269 4.269 5 C 0.015 3.985 6 C -0.215 4.215 7 C 0.524 3.476 8 O -0.491 6.491 9 O -0.524 6.524 10 C 0.245 3.755 11 O -0.279 6.279 12 C 0.063 3.937 13 C -0.007 4.007 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.898 5.898 18 Si 0.879 3.121 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.261 1.261 22 C -0.262 4.262 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.134 0.866 27 H 0.143 0.857 28 H 0.409 0.591 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.025 0.975 33 H 0.266 0.734 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.500 8.073 -0.027 23.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.157 3.843 4 C -0.288 4.288 5 C -0.003 4.003 6 C -0.217 4.217 7 C 0.368 3.632 8 O -0.379 6.379 9 O -0.337 6.337 10 C 0.194 3.806 11 O -0.189 6.189 12 C -0.011 4.011 13 C -0.045 4.045 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.705 3.295 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.281 4.281 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.152 0.848 27 H 0.160 0.840 28 H 0.267 0.733 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.935 7.582 -0.031 23.209 hybrid contribution 0.585 1.096 0.028 1.242 sum -21.350 8.678 -0.003 23.047 Atomic orbital electron populations 1.23140 0.77932 1.04221 1.01667 1.86080 1.21801 1.26958 1.87309 1.19009 0.91568 0.84198 0.89565 1.20786 1.00309 0.91897 1.15822 1.20711 0.92053 0.97869 0.89677 1.18219 0.92937 0.88472 1.22067 1.20470 0.85160 0.84263 0.73309 1.91009 1.14644 1.87312 1.44900 1.84529 1.44840 1.17377 1.86926 1.18776 0.84396 0.91200 0.86211 1.86402 1.12729 1.35617 1.84116 1.23314 0.94228 0.82545 1.00984 1.19575 0.87948 0.98697 0.98255 1.20836 0.91494 0.91715 1.52407 0.90688 1.24908 0.97466 0.96453 0.94043 1.69893 1.07863 1.25613 1.50265 0.86780 0.79310 0.84519 0.78869 1.20033 1.21193 1.18565 1.20500 0.92555 0.98165 1.16923 0.92278 0.92283 0.88019 0.84812 0.83956 0.73286 0.91915 0.91950 0.95199 0.95635 0.92467 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.80 101.05 0.99 1.16 16 2 O -0.31 -3.64 10.48 -18.81 -0.20 -3.84 16 3 C 0.20 2.64 6.69 -39.05 -0.26 2.38 16 4 C -0.27 -2.88 8.96 -39.85 -0.36 -3.24 16 5 C 0.02 0.18 9.55 -39.58 -0.38 -0.20 16 6 C -0.21 -3.27 5.89 -104.85 -0.62 -3.88 16 7 C 0.52 8.20 8.25 34.35 0.28 8.48 16 8 O -0.49 -9.77 15.94 -26.63 -0.42 -10.19 16 9 O -0.52 -5.76 12.67 -40.74 -0.52 -6.27 16 10 C 0.24 4.24 6.70 -38.69 -0.26 3.98 16 11 O -0.28 -5.77 8.21 -40.54 -0.33 -6.11 16 12 C 0.06 1.33 4.68 37.16 0.17 1.51 16 13 C -0.01 -0.18 4.41 -27.88 -0.12 -0.31 16 14 C -0.53 -15.10 9.66 -34.44 -0.33 -15.43 16 15 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 18 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 19 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 22 C -0.26 -4.05 8.97 -39.32 -0.35 -4.40 16 23 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 24 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.13 1.00 6.26 -52.48 -0.33 0.67 16 27 H 0.14 1.26 7.60 -52.48 -0.40 0.86 16 28 H 0.41 2.74 9.11 45.56 0.42 3.16 16 29 H 0.06 1.25 7.65 -51.93 -0.40 0.86 16 30 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 31 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 32 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 33 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.15 2.34 6.31 -52.49 -0.33 2.01 16 LS Contribution 297.62 15.07 4.49 4.49 Total: -1.00 -35.05 297.62 -5.22 -40.27 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -3.01 Total: -1.16 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.33 Total: -7.89 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.47 Total: -26.40 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.05 -5.22 -40.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042313320.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.497 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds